rna-TanjilR_01580
|
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_01580 vs. DB:Swiss
Match: AUG6_ARATH (AUGMIN subunit 6 OS=Arabidopsis thaliana OX=3702 GN=AUG6 PE=1 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.585e-45 Identity = 51/60 (85.00%), Postives = 57/60 (95.00%), Query Frame = 1
Query: 37 SAMYTNCLILGLDPSIIGIGSSNSTPRVGLFRHSNPKLGEQLLYFILSSLRGPIQSAKVF 216
SAMYTNCL+LGLDP++IG+G+SN TPRVGLFRHSNPKLGEQLLYFILSSLRGP QS+K F
Sbjct: 15 SAMYTNCLLLGLDPNVIGLGASNGTPRVGLFRHSNPKLGEQLLYFILSSLRGPAQSSKDF 74 HSP 2 Score: 93.9745 bits (232), Expect = 1.585e-45 Identity = 51/91 (56.04%), Postives = 53/91 (58.24%), Query Frame = 2
Query: 314 QDFDKVWPIFDSAQSRDFRKVLIGWI*ISXXXXXXXXXXXXXXXXXMVIECVW*VVQRIISELESQDALPRSNSRVSSLATCCGPRLVVVL 586
+DFDKVWPIFDSAQSRDFRKV VQ IISELESQ ALPRSNSRVSSLATCCGPR V +L
Sbjct: 72 KDFDKVWPIFDSAQSRDFRKV----------------------------------VQAIISELESQGALPRSNSRVSSLATCCGPRFVELL 128 HSP 3 Score: 84.3445 bits (207), Expect = 3.256e-31 Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 1
Query: 1585 QAKIALERRKFLKNAEMAVQRQGMWSNLAHEMTAEFRSLCAEEVY 1719
+A+I LERR+FLKNAE AVQRQ MWSNLAHEMTAEFR LCAEE Y
Sbjct: 173 KARIVLERRRFLKNAETAVQRQAMWSNLAHEMTAEFRGLCAEEAY 217 HSP 4 Score: 76.2554 bits (186), Expect = 3.256e-31 Identity = 48/55 (87.27%), Postives = 53/55 (96.36%), Query Frame = 2
Query: 1832 QAYLQQELEKLHDLRNKVKLEGEVWDDXXXXXXXXXXXXXKATRLWDSLLARKSK 1996
+AYLQQELEKL+DLRNKVK EGEVWDDLVSSSSQNSHLVSKATRLWDS++ARK +
Sbjct: 215 EAYLQQELEKLNDLRNKVKQEGEVWDDLVSSSSQNSHLVSKATRLWDSIMARKGQ 269 HSP 5 Score: 125.561 bits (314), Expect = 1.460e-27 Identity = 80/170 (47.06%), Postives = 103/170 (60.59%), Query Frame = 1
Query: 5821 VDDDSSYIQNLKRSVREAAXXXXXXXXXXXXXXXXXXXXXHFFAPLSETGFSHLDAEKKAASLRRKRLFVSQMDDSLLENHASDGYGERKFDELPDMLNELGRLSDFDNG--FLSYTGSNAT-SDAQQSIYDFEDAQDQVFSPPMLIDSSLLADTFEDLLGMLRLQQAVL 6321
D SS++ NLK+SVREAAL + S S +GS H+F PLS TGFS +E KA LR R S + S LE + D + K+ ++PD ++L D+DNG FLS GSN+ SDAQQS YD +D QVFSPP+L+DSSLL+D +EDLL L +A L
Sbjct: 573 TDTSSSFVHNLKKSVREAALLIPSSAGSSRDSQSDEGSE-HYFVPLSATGFSRFPSETKALPLRGSRALTSLSEPSFLEPNVPDSFAPSKYSDIPDTYDDLDSFKDYDNGNGFLSVAGSNSVASDAQQSFYDIDD---QVFSPPLLMDSSLLSDAYEDLLAPLSETEAAL 738 HSP 6 Score: 95.9005 bits (237), Expect = 4.061e-27 Identity = 58/107 (54.21%), Postives = 68/107 (63.55%), Query Frame = 2
Query: 3047 RYRISGSSLLAAMDQSSQL--GDLPSVH-------MDSKEESDASHF------------------SNEALTRLDDRNGRAHQTVDVAEVIRRWTHALQRIHKQALHL 3286
RYRISGS+LLAAMDQSSQ+ +L S H D KE SD S+ S+E L+R+DDR G+ +QTVDVAEVIRRWTHALQRIHKQ+L L
Sbjct: 288 RYRISGSALLAAMDQSSQVPRAELLSAHSDDSASLADDKELSDGSYTNMHDHSLVDSFETASSQASDETLSRVDDRGGKINQTVDVAEVIRRWTHALQRIHKQSLLL 394 HSP 7 Score: 50.8322 bits (120), Expect = 4.061e-27 Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = 3
Query: 2904 GQHEVLASGPIEDLIAHREHR 2966
GQHEVLASGPIEDLIAHREHR
Sbjct: 268 GQHEVLASGPIEDLIAHREHR 288 HSP 8 Score: 121.324 bits (303), Expect = 3.276e-26 Identity = 73/160 (45.62%), Postives = 96/160 (60.00%), Query Frame = 3
Query: 4989 HCCTFHLQVLINQLKDVAPAIKKSISECTEKVNCITSTLPPITRHHSQSTSPSQAHSNGRMVIYPF*YDFIVASSVPSQYGI*FCTICIIQDNSTDDVGEVTSRISNVQIDKASVSPATLKLPQLFSLTP-SSGKAGNVQRRHGIVHQTSQTESLPDSKS 5465
H +F QVLINQLK+V+PAI+KSISECTE VN + TLPP+TR + Q++S Q+ +GR I + ++DV E+TS +SNVQ++K S SP TLKLPQLFS TP SSGK GN Q+R + Q ++ ESL + S
Sbjct: 431 HLASF--QVLINQLKEVSPAIQKSISECTEMVNSLPPTLPPVTRSNGQASSLLQSQGSGR-----------------------------IMEGVSNDVAELTSTMSNVQLEKVSASP-TLKLPQLFSSTPTSSGKGGNGQKRQTMASQVNKMESLSEKNS 558 HSP 9 Score: 102.064 bits (253), Expect = 3.301e-20 Identity = 47/66 (71.21%), Postives = 54/66 (81.82%), Query Frame = 3
Query: 1017 CQCRFVELLWQLSMHALVEVHRRTFTADVASNPLPAPLTDVAFSHAATLLPVTKVSLIIHQENLSK 1214
C RFVELLWQLS+HAL EVHRRTF ADVASNPLP+ LTDV+FSHAATLLPVTK +++ + K
Sbjct: 120 CGPRFVELLWQLSLHALREVHRRTFPADVASNPLPSSLTDVSFSHAATLLPVTKARIVLERRRFLK 185 HSP 10 Score: 76.2554 bits (186), Expect = 2.986e-12 Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 3
Query: 3870 LQGKANDGEGPDILRSAQEGSSSGHAESLSATLAEHQQHLASFQV 4004
L KANDG+GPDILR+A +G +SGH ESL+ATL EHQQHLASFQV
Sbjct: 393 LLAKANDGDGPDILRTASDGGTSGHVESLAATLTEHQQHLASFQV 437 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_01580 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 1
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_01580_La_Tanjil_v1.0 ID=rna-TanjilR_01580_La_Tanjil_v1.0; Name=rna-TanjilR_01580; organism=Lupinus angustifolius; type=mRNA; length=6934bpback to top protein sequence of rna-TanjilR_01580_La_Tanjil_v1.0 >rna-TanjilR_01580_La_Tanjil_v1.0 ID=rna-TanjilR_01580_La_Tanjil_v1.0; Name=rna-TanjilR_01580_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=711bpback to top mRNA from alignment at Chr_LG20-CM007380.1:20723609..20730542- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_01580_La_Tanjil_v1.0 ID=rna-TanjilR_01580_La_Tanjil_v1.0; Name=rna-TanjilR_01580; organism=Lupinus angustifolius; type=mRNA; length=6934bp; location=Sequence derived from: Chr_LG20-CM007380.1:20723609..20730542- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG20-CM007380.1:20723609..20730542- >rna-TanjilR_01580_La_Tanjil_v1.0 ID=rna-TanjilR_01580_La_Tanjil_v1.0; Name=rna-TanjilR_01580; organism=Lupinus angustifolius; type=CDS; length=2136bp; location=Sequence derived from: Chr_LG20-CM007380.1:20723609..20730542- (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|