rna-TanjilR_01575

Transcript Overview
Namerna-TanjilR_01575
Unique Namerna-TanjilR_01575_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length906
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG20-CM007380.1supercontigChr_LG20-CM007380.1:20771520..20772425 +Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL086Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR489Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR500Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR0780Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0784Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaR0667Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccR0833Cajanus cajan Asha genome v1.0Cajanus cajan
ancrR0861Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0554Pisum sativum Cameor genome v1aPisum sativum
anpvR0776Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0651Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0664Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0746Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0799Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0637Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
antifR0658Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0656Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvrvR0623Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR0653Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR0620Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR0632Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0732Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR0614Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR0698Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0749Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0757Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0651Cicer arietinum
anccaR0682Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0691Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0762Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0777Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0784Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR0721Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvstR0744Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0755Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0761Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0770Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0766Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0778Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvunR0624Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR0632Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Va10G052160.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vfaba.Tiffany.R1.1g090160.1Vicia faba cv. Tiffany genome v1.0Vicia faba
jg45907.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Ca_14665Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Cr_14788.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
evm.model.Chr04.733Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigan.11G081400.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
rna-XM_004489529.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vfaba.Hedin2.R1.1g119920.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Psat01G0217200-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vigst.11G042300.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vigun04g083400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
LR48_mrnaVigan10g212500Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Ca_04660.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Phvul.004G056400.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Psat1g084600.1Pisum sativum Cameor genome v1aPisum sativum
Vum_11G00527.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vigun04g083400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Cc_v2.0_20812.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
rna-XM_014650887.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-TanjilR_06036Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_01575gene-TanjilG_01575_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_01575rna-TanjilR_01575_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_01575_La_Tanjil_v1.0rna-TanjilR_01575_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_01575_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20771520..20772425rna-TanjilR_01575_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20771520..20772425Lupinus angustifoliusexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_01575_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20771520..20772425rna-TanjilR_01575_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20771520..20772425Lupinus angustifoliusCDS


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_01575 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 299..301

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_01575_La_Tanjil_v1.0 ID=rna-TanjilR_01575_La_Tanjil_v1.0; Name=rna-TanjilR_01575; organism=Lupinus angustifolius; type=mRNA; length=906bp
ATGAACGGTGAAAAAGTGTGGCGTTTGGAATCATCACATGTCTCCGACGA
TGGAGCTCTTCCTCTCGATAACAGAATACTAAACACGATAATGCTCCGAT
TCCGACCTATCGCTCCAAAACCGGTCTCCGACGGTTCCGTTGGTCCGGTT
CAAGTGAACCAGAGCAAGGGTCCAGTCTATGGGAAAAGAACGAAGAGGAA
GTACGTTAGGGTTCGAAGGAATAACGGTTACGTGAGAAAGAATAACGAGA
AATTTGTTGAATCACGAGATCGTGTTGCGGCAGTTTCAACGTTGCAGTTG
ATGCCTGAGAGAGATAAAACTGAGGAATCCTCTTCTATAGCTAGAGATTC
ATGGTGTAAGAACCTTGATCTTAACGGAACCGTTGAGAAGGTTCAGATCC
TGGATAATAATCTGAAACCACCGTGCGTGACGGTGAACGTTGGTTCCGGT
ACCACCACTCTAGATCCTCCATCAGCGGTGGTTGAGTCATGGATTACTGT
AGAGAGCGTGAGTGACACGTGCATGAGTGGAGGTGATGAAGAATCGTTAG
GTTGTACGGACGGTGAGAAGTTGAAGAATCTAGAAAGTGACACGTGTCCA
GGGTTTATATCAGACGGTTACTGGAAGGTTCGGTGGGTAAACGATGCGTT
TAAGAAGATGATAGtaagtgagaaagagaaagagaaagaagaatgtTCAG
AAATGGTGGTTCTGTTGAAGGTGAAGGATAACAGTATTTGGCGTTGTTGC
TATTCTTACCCGTCGTTCACTTGCACTGTGAGACTGCAGTACACGTGTTT
GAAGGAGAAGTGCACTAAGATGGTTCCTTGTGATGTTTGGAGATTAGAAT
CAAATGGGTTTGCATGGAGACTAGACGTGAAAGCTGCTCTCAGTTTGGGT
Ctctga
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protein sequence of rna-TanjilR_01575_La_Tanjil_v1.0

>rna-TanjilR_01575_La_Tanjil_v1.0 ID=rna-TanjilR_01575_La_Tanjil_v1.0; Name=rna-TanjilR_01575_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=301bp
MNGEKVWRLESSHVSDDGALPLDNRILNTIMLRFRPIAPKPVSDGSVGPV
QVNQSKGPVYGKRTKRKYVRVRRNNGYVRKNNEKFVESRDRVAAVSTLQL
MPERDKTEESSSIARDSWCKNLDLNGTVEKVQILDNNLKPPCVTVNVGSG
TTTLDPPSAVVESWITVESVSDTCMSGGDEESLGCTDGEKLKNLESDTCP
GFISDGYWKVRWVNDAFKKMIVSEKEKEKEECSEMVVLLKVKDNSIWRCC
YSYPSFTCTVRLQYTCLKEKCTKMVPCDVWRLESNGFAWRLDVKAALSLG
L
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mRNA from alignment at Chr_LG20-CM007380.1:20771520..20772425+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_01575_La_Tanjil_v1.0 ID=rna-TanjilR_01575_La_Tanjil_v1.0; Name=rna-TanjilR_01575; organism=Lupinus angustifolius; type=mRNA; length=906bp; location=Sequence derived from: Chr_LG20-CM007380.1:20771520..20772425+ (Lupinus angustifolius
ATGAACGGTGAAAAAGTGTGGCGTTTGGAATCATCACATGTCTCCGACGA
TGGAGCTCTTCCTCTCGATAACAGAATACTAAACACGATAATGCTCCGAT
TCCGACCTATCGCTCCAAAACCGGTCTCCGACGGTTCCGTTGGTCCGGTT
CAAGTGAACCAGAGCAAGGGTCCAGTCTATGGGAAAAGAACGAAGAGGAA
GTACGTTAGGGTTCGAAGGAATAACGGTTACGTGAGAAAGAATAACGAGA
AATTTGTTGAATCACGAGATCGTGTTGCGGCAGTTTCAACGTTGCAGTTG
ATGCCTGAGAGAGATAAAACTGAGGAATCCTCTTCTATAGCTAGAGATTC
ATGGTGTAAGAACCTTGATCTTAACGGAACCGTTGAGAAGGTTCAGATCC
TGGATAATAATCTGAAACCACCGTGCGTGACGGTGAACGTTGGTTCCGGT
ACCACCACTCTAGATCCTCCATCAGCGGTGGTTGAGTCATGGATTACTGT
AGAGAGCGTGAGTGACACGTGCATGAGTGGAGGTGATGAAGAATCGTTAG
GTTGTACGGACGGTGAGAAGTTGAAGAATCTAGAAAGTGACACGTGTCCA
GGGTTTATATCAGACGGTTACTGGAAGGTTCGGTGGGTAAACGATGCGTT
TAAGAAGATGATAGtaagtgagaaagagaaagagaaagaagaatgtTCAG
AAATGGTGGTTCTGTTGAAGGTGAAGGATAACAGTATTTGGCGTTGTTGC
TATTCTTACCCGTCGTTCACTTGCACTGTGAGACTGCAGTACACGTGTTT
GAAGGAGAAGTGCACTAAGATGGTTCCTTGTGATGTTTGGAGATTAGAAT
CAAATGGGTTTGCATGGAGACTAGACGTGAAAGCTGCTCTCAGTTTGGGT
Ctctga
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Coding sequence (CDS) from alignment at Chr_LG20-CM007380.1:20771520..20772425+

>rna-TanjilR_01575_La_Tanjil_v1.0 ID=rna-TanjilR_01575_La_Tanjil_v1.0; Name=rna-TanjilR_01575; organism=Lupinus angustifolius; type=CDS; length=906bp; location=Sequence derived from: Chr_LG20-CM007380.1:20771520..20772425+ (Lupinus angustifolius
ATGAACGGTGAAAAAGTGTGGCGTTTGGAATCATCACATGTCTCCGACGA
TGGAGCTCTTCCTCTCGATAACAGAATACTAAACACGATAATGCTCCGAT
TCCGACCTATCGCTCCAAAACCGGTCTCCGACGGTTCCGTTGGTCCGGTT
CAAGTGAACCAGAGCAAGGGTCCAGTCTATGGGAAAAGAACGAAGAGGAA
GTACGTTAGGGTTCGAAGGAATAACGGTTACGTGAGAAAGAATAACGAGA
AATTTGTTGAATCACGAGATCGTGTTGCGGCAGTTTCAACGTTGCAGTTG
ATGCCTGAGAGAGATAAAACTGAGGAATCCTCTTCTATAGCTAGAGATTC
ATGGTGTAAGAACCTTGATCTTAACGGAACCGTTGAGAAGGTTCAGATCC
TGGATAATAATCTGAAACCACCGTGCGTGACGGTGAACGTTGGTTCCGGT
ACCACCACTCTAGATCCTCCATCAGCGGTGGTTGAGTCATGGATTACTGT
AGAGAGCGTGAGTGACACGTGCATGAGTGGAGGTGATGAAGAATCGTTAG
GTTGTACGGACGGTGAGAAGTTGAAGAATCTAGAAAGTGACACGTGTCCA
GGGTTTATATCAGACGGTTACTGGAAGGTTCGGTGGGTAAACGATGCGTT
TAAGAAGATGATAGtaagtgagaaagagaaagagaaagaagaatgtTCAG
AAATGGTGGTTCTGTTGAAGGTGAAGGATAACAGTATTTGGCGTTGTTGC
TATTCTTACCCGTCGTTCACTTGCACTGTGAGACTGCAGTACACGTGTTT
GAAGGAGAAGTGCACTAAGATGGTTCCTTGTGATGTTTGGAGATTAGAAT
CAAATGGGTTTGCATGGAGACTAGACGTGAAAGCTGCTCTCAGTTTGGGT
Ctctga
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