Transcript Overview
| Name | rna-TanjilR_01575 |
|---|
| Unique Name | rna-TanjilR_01575_La_Tanjil_v1.0 |
|---|
| Type | mRNA |
|---|
| Organism | Lupinus angustifolius (blue lupin) |
|---|
| Sequence length | 906 |
|---|
| Product | hypothetical protein |
|---|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| rna-TanjilR_01575 | rna-TanjilR_01575_La_Tanjil_v1.0-protein | Lupinus angustifolius | polypeptide |
| rna-TanjilR_01575_La_Tanjil_v1.0 | rna-TanjilR_01575_La_Tanjil_v1.0 | Lupinus angustifolius | polypeptide |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| rna-TanjilR_01575_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20771520..20772425 | rna-TanjilR_01575_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20771520..20772425 | Lupinus angustifolius | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| rna-TanjilR_01575_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20771520..20772425 | rna-TanjilR_01575_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20771520..20772425 | Lupinus angustifolius | CDS |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 299..301 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_01575_La_Tanjil_v1.0 ID=rna-TanjilR_01575_La_Tanjil_v1.0; Name=rna-TanjilR_01575; organism=Lupinus angustifolius; type=mRNA; length=906bp
ATGAACGGTGAAAAAGTGTGGCGTTTGGAATCATCACATGTCTCCGACGA
TGGAGCTCTTCCTCTCGATAACAGAATACTAAACACGATAATGCTCCGAT
TCCGACCTATCGCTCCAAAACCGGTCTCCGACGGTTCCGTTGGTCCGGTT
CAAGTGAACCAGAGCAAGGGTCCAGTCTATGGGAAAAGAACGAAGAGGAA
GTACGTTAGGGTTCGAAGGAATAACGGTTACGTGAGAAAGAATAACGAGA
AATTTGTTGAATCACGAGATCGTGTTGCGGCAGTTTCAACGTTGCAGTTG
ATGCCTGAGAGAGATAAAACTGAGGAATCCTCTTCTATAGCTAGAGATTC
ATGGTGTAAGAACCTTGATCTTAACGGAACCGTTGAGAAGGTTCAGATCC
TGGATAATAATCTGAAACCACCGTGCGTGACGGTGAACGTTGGTTCCGGT
ACCACCACTCTAGATCCTCCATCAGCGGTGGTTGAGTCATGGATTACTGT
AGAGAGCGTGAGTGACACGTGCATGAGTGGAGGTGATGAAGAATCGTTAG
GTTGTACGGACGGTGAGAAGTTGAAGAATCTAGAAAGTGACACGTGTCCA
GGGTTTATATCAGACGGTTACTGGAAGGTTCGGTGGGTAAACGATGCGTT
TAAGAAGATGATAGtaagtgagaaagagaaagagaaagaagaatgtTCAG
AAATGGTGGTTCTGTTGAAGGTGAAGGATAACAGTATTTGGCGTTGTTGC
TATTCTTACCCGTCGTTCACTTGCACTGTGAGACTGCAGTACACGTGTTT
GAAGGAGAAGTGCACTAAGATGGTTCCTTGTGATGTTTGGAGATTAGAAT
CAAATGGGTTTGCATGGAGACTAGACGTGAAAGCTGCTCTCAGTTTGGGT
Ctctga back to topprotein sequence of rna-TanjilR_01575_La_Tanjil_v1.0 >rna-TanjilR_01575_La_Tanjil_v1.0 ID=rna-TanjilR_01575_La_Tanjil_v1.0; Name=rna-TanjilR_01575_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=301bp
MNGEKVWRLESSHVSDDGALPLDNRILNTIMLRFRPIAPKPVSDGSVGPV
QVNQSKGPVYGKRTKRKYVRVRRNNGYVRKNNEKFVESRDRVAAVSTLQL
MPERDKTEESSSIARDSWCKNLDLNGTVEKVQILDNNLKPPCVTVNVGSG
TTTLDPPSAVVESWITVESVSDTCMSGGDEESLGCTDGEKLKNLESDTCP
GFISDGYWKVRWVNDAFKKMIVSEKEKEKEECSEMVVLLKVKDNSIWRCC
YSYPSFTCTVRLQYTCLKEKCTKMVPCDVWRLESNGFAWRLDVKAALSLG
L back to topmRNA from alignment at Chr_LG20-CM007380.1:20771520..20772425+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna-TanjilR_01575_La_Tanjil_v1.0 ID=rna-TanjilR_01575_La_Tanjil_v1.0; Name=rna-TanjilR_01575; organism=Lupinus angustifolius; type=mRNA; length=906bp; location=Sequence derived from: Chr_LG20-CM007380.1:20771520..20772425+ (Lupinus angustifolius
ATGAACGGTGAAAAAGTGTGGCGTTTGGAATCATCACATGTCTCCGACGA
TGGAGCTCTTCCTCTCGATAACAGAATACTAAACACGATAATGCTCCGAT
TCCGACCTATCGCTCCAAAACCGGTCTCCGACGGTTCCGTTGGTCCGGTT
CAAGTGAACCAGAGCAAGGGTCCAGTCTATGGGAAAAGAACGAAGAGGAA
GTACGTTAGGGTTCGAAGGAATAACGGTTACGTGAGAAAGAATAACGAGA
AATTTGTTGAATCACGAGATCGTGTTGCGGCAGTTTCAACGTTGCAGTTG
ATGCCTGAGAGAGATAAAACTGAGGAATCCTCTTCTATAGCTAGAGATTC
ATGGTGTAAGAACCTTGATCTTAACGGAACCGTTGAGAAGGTTCAGATCC
TGGATAATAATCTGAAACCACCGTGCGTGACGGTGAACGTTGGTTCCGGT
ACCACCACTCTAGATCCTCCATCAGCGGTGGTTGAGTCATGGATTACTGT
AGAGAGCGTGAGTGACACGTGCATGAGTGGAGGTGATGAAGAATCGTTAG
GTTGTACGGACGGTGAGAAGTTGAAGAATCTAGAAAGTGACACGTGTCCA
GGGTTTATATCAGACGGTTACTGGAAGGTTCGGTGGGTAAACGATGCGTT
TAAGAAGATGATAGtaagtgagaaagagaaagagaaagaagaatgtTCAG
AAATGGTGGTTCTGTTGAAGGTGAAGGATAACAGTATTTGGCGTTGTTGC
TATTCTTACCCGTCGTTCACTTGCACTGTGAGACTGCAGTACACGTGTTT
GAAGGAGAAGTGCACTAAGATGGTTCCTTGTGATGTTTGGAGATTAGAAT
CAAATGGGTTTGCATGGAGACTAGACGTGAAAGCTGCTCTCAGTTTGGGT
Ctctga back to topCoding sequence (CDS) from alignment at Chr_LG20-CM007380.1:20771520..20772425+ >rna-TanjilR_01575_La_Tanjil_v1.0 ID=rna-TanjilR_01575_La_Tanjil_v1.0; Name=rna-TanjilR_01575; organism=Lupinus angustifolius; type=CDS; length=906bp; location=Sequence derived from: Chr_LG20-CM007380.1:20771520..20772425+ (Lupinus angustifolius
ATGAACGGTGAAAAAGTGTGGCGTTTGGAATCATCACATGTCTCCGACGA
TGGAGCTCTTCCTCTCGATAACAGAATACTAAACACGATAATGCTCCGAT
TCCGACCTATCGCTCCAAAACCGGTCTCCGACGGTTCCGTTGGTCCGGTT
CAAGTGAACCAGAGCAAGGGTCCAGTCTATGGGAAAAGAACGAAGAGGAA
GTACGTTAGGGTTCGAAGGAATAACGGTTACGTGAGAAAGAATAACGAGA
AATTTGTTGAATCACGAGATCGTGTTGCGGCAGTTTCAACGTTGCAGTTG
ATGCCTGAGAGAGATAAAACTGAGGAATCCTCTTCTATAGCTAGAGATTC
ATGGTGTAAGAACCTTGATCTTAACGGAACCGTTGAGAAGGTTCAGATCC
TGGATAATAATCTGAAACCACCGTGCGTGACGGTGAACGTTGGTTCCGGT
ACCACCACTCTAGATCCTCCATCAGCGGTGGTTGAGTCATGGATTACTGT
AGAGAGCGTGAGTGACACGTGCATGAGTGGAGGTGATGAAGAATCGTTAG
GTTGTACGGACGGTGAGAAGTTGAAGAATCTAGAAAGTGACACGTGTCCA
GGGTTTATATCAGACGGTTACTGGAAGGTTCGGTGGGTAAACGATGCGTT
TAAGAAGATGATAGtaagtgagaaagagaaagagaaagaagaatgtTCAG
AAATGGTGGTTCTGTTGAAGGTGAAGGATAACAGTATTTGGCGTTGTTGC
TATTCTTACCCGTCGTTCACTTGCACTGTGAGACTGCAGTACACGTGTTT
GAAGGAGAAGTGCACTAAGATGGTTCCTTGTGATGTTTGGAGATTAGAAT
CAAATGGGTTTGCATGGAGACTAGACGTGAAAGCTGCTCTCAGTTTGGGT
Ctctga back to top
|
