rna-TanjilR_01560

Transcript Overview
Namerna-TanjilR_01560
Unique Namerna-TanjilR_01560_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length2943
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG20-CM007380.1supercontigChr_LG20-CM007380.1:20927696..20930638 +Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananR489Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR500Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR0773Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0784Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaR0667Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccR0833Cajanus cajan Asha genome v1.0Cajanus cajan
ancrR0811Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0554Pisum sativum Cameor genome v1aPisum sativum
anpsR0562Pisum sativum Cameor genome v1aPisum sativum
anpvR0776Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0664Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0746Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0637Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
antifR0658Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0656Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvuaR0632Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0732Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR0614Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR0698Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0749Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0651Cicer arietinum
anccaR0688Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0762Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0777Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR0721Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvstR0744Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0755Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0761Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0770Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvunR0632Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR0787Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR0809Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR0811Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Cc_v2.0_18591.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Cr_04637.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vigst.04G289700.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
PvulFLAVERTChr01.1627Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
rna-KK1_019876Cajanus cajan Asha genome v1.0Cajanus cajan
Va03G085240.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Ca_04573.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Psat01G0225700-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Psat1g087680.1Pisum sativum Cameor genome v1aPisum sativum
Vfaba.Hedin2.R1.1g118320.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
PvulFLAVERTChr04.1000428Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
rna-XM_004489567.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
jg45863.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Ca_19683Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vigan.04G428400.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vum_04G03222.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vfaba.Tiffany.R1.1g088280.1Vicia faba cv. Tiffany genome v1.0Vicia faba

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-TanjilR_05220Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_01560gene-TanjilG_01560_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_01560rna-TanjilR_01560_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_01560_La_Tanjil_v1.0rna-TanjilR_01560_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_01560_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20927696..20927794rna-TanjilR_01560_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20927696..20927794Lupinus angustifoliusexon
rna-TanjilR_01560_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20927969..20928047rna-TanjilR_01560_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20927969..20928047Lupinus angustifoliusexon
rna-TanjilR_01560_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20928502..20928671rna-TanjilR_01560_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20928502..20928671Lupinus angustifoliusexon
rna-TanjilR_01560_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20928849..20928896rna-TanjilR_01560_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20928849..20928896Lupinus angustifoliusexon
rna-TanjilR_01560_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20929896..20929991rna-TanjilR_01560_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20929896..20929991Lupinus angustifoliusexon
rna-TanjilR_01560_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20930504..20930638rna-TanjilR_01560_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20930504..20930638Lupinus angustifoliusexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_01560_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20927696..20927794rna-TanjilR_01560_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20927696..20927794Lupinus angustifoliusCDS
rna-TanjilR_01560_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20927969..20928047rna-TanjilR_01560_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20927969..20928047Lupinus angustifoliusCDS
rna-TanjilR_01560_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20928502..20928671rna-TanjilR_01560_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20928502..20928671Lupinus angustifoliusCDS
rna-TanjilR_01560_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20928849..20928896rna-TanjilR_01560_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20928849..20928896Lupinus angustifoliusCDS
rna-TanjilR_01560_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20929896..20929991rna-TanjilR_01560_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20929896..20929991Lupinus angustifoliusCDS
rna-TanjilR_01560_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20930504..20930638rna-TanjilR_01560_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:20930504..20930638Lupinus angustifoliusCDS


Homology
[Close]
BLAST of rna-TanjilR_01560 vs. DB:Swiss
Match: TOM20_SOLTU (Mitochondrial import receptor subunit TOM20 OS=Solanum tuberosum OX=4113 GN=TOM20 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.887e-18
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 2 
Query:  800 FAEAVSKLEEALAINPKKHDTLWCLGNAYTSQAFLIPDQEEAKPYFDKAAEYFQQAVD 973
             ++A SKLEEAL +NP+KHD LWCLGNA+TS  FL PD +EAK YF+KA + FQQA D
Sbjct:   57 ISDATSKLEEALTVNPEKHDALWCLGNAHTSHVFLTPDMDEAKVYFEKATQCFQQAFD 114

HSP 2 Score: 61.2326 bits (147), Expect = 3.748e-9
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 1 
Query: 2833 DLKYDIFGWVILAVGIVAWVGFAKSNM 2913
            DLKYDIFGWVILAVGIVAWVGFAKSNM
Sbjct:  169 DLKYDIFGWVILAVGIVAWVGFAKSNM 195
[Close]
BLAST of rna-TanjilR_01560 vs. DB:Swiss
Match: TO202_ARATH (Mitochondrial import receptor subunit TOM20-2 OS=Arabidopsis thaliana OX=3702 GN=TOM20-2 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 6.083e-16
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 2 
Query:  806 EAVSKLEEALAINPKKHDTLWCLGNAYTSQAFLIPDQEEAKPYFDKAAEYFQQAVDE 976
            +A+SKLEEAL INP KH  LWC+ NAYT+ AF + D EEAK +FDKA EYFQ+A +E
Sbjct:   60 DAISKLEEALTINPGKHQALWCIANAYTAHAFYVHDPEEAKEHFDKATEYFQRAENE 116
[Close]
BLAST of rna-TanjilR_01560 vs. DB:Swiss
Match: TO203_ARATH (Mitochondrial import receptor subunit TOM20-3 OS=Arabidopsis thaliana OX=3702 GN=TOM20-3 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.233e-16
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = 2 
Query:  806 EAVSKLEEALAINPKKHDTLWCLGNAYTSQAFLIPDQEEAKPYFDKAAEYFQQAVDE 976
            EA++K EEAL I+PKK + +WC+GNAYTS AFL PD+ EAK  FD A ++FQQAVDE
Sbjct:   59 EAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115

HSP 2 Score: 54.299 bits (129), Expect = 7.853e-7
Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 1 
Query: 2815 KKKKSSDLKYDIFGWVILAVGIVAWVGFAKSNM 2913
            K KKSSD KYD  GWVILA+G+VAW+ FAK+N+
Sbjct:  164 KNKKSSDAKYDAMGWVILAIGVVAWISFAKANV 196
[Close]
BLAST of rna-TanjilR_01560 vs. DB:Swiss
Match: TO204_ARATH (Mitochondrial import receptor subunit TOM20-4 OS=Arabidopsis thaliana OX=3702 GN=TOM20-4 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.084e-12
Identity = 33/57 (57.89%), Postives = 42/57 (73.68%), Query Frame = 2 
Query:  806 EAVSKLEEALAINPKKHDTLWCLGNAYTSQAFLIPDQEEAKPYFDKAAEYFQQAVDE 976
            EA+ KL EAL I+PKKHD LW +GNA+ S  FL  DQ EA   F+KA+++FQ AV+E
Sbjct:   57 EAILKLGEALVIDPKKHDALWLIGNAHLSFGFLSSDQTEASDNFEKASQFFQLAVEE 113
[Close]
BLAST of rna-TanjilR_01560 vs. DB:Swiss
Match: TOM20_ORYSI (Probable mitochondrial import receptor subunit TOM20 OS=Oryza sativa subsp. indica OX=39946 GN=TOM20 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 5.294e-11
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 2 
Query:  806 EAVSKLEEALAINPKKHDTLWCLGNAYTSQAFLIPDQEEAKPYFDKAAEYFQQAVD 973
            +A SKLEEAL I+P K D LWCLGNA TS  F   D  +A  +F+KA + FQ+AVD
Sbjct:   61 DAESKLEEALKIDPMKADALWCLGNAQTSHGFFTSDTVKANEFFEKATQCFQKAVD 116
[Close]
BLAST of rna-TanjilR_01560 vs. DB:Swiss
Match: TOM20_ORYSJ (Probable mitochondrial import receptor subunit TOM20 OS=Oryza sativa subsp. japonica OX=39947 GN=TOM20 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.395e-11
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 2 
Query:  806 EAVSKLEEALAINPKKHDTLWCLGNAYTSQAFLIPDQEEAKPYFDKAAEYFQQAVD 973
            +A SKLEEAL I+P K D LWCLGNA TS  F   D  +A  +F+KA + FQ+AVD
Sbjct:   61 DAESKLEEALKIDPMKADALWCLGNAQTSHGFFTSDTVKANEFFEKATQCFQKAVD 116

HSP 2 Score: 55.4546 bits (132), Expect = 3.187e-7
Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 1 
Query: 2806 QTQKKKKSSDLKYDIFGWVILAVGIVAWVGFAKSN 2910
            Q++KKKK SD  YD+FGWV+L VG+V WVG AKSN
Sbjct:  161 QSRKKKKDSDFWYDVFGWVVLGVGMVVWVGLAKSN 195
[Close]
BLAST of rna-TanjilR_01560 vs. DB:Swiss
Match: TO201_ARATH (Mitochondrial import receptor subunit TOM20-1 OS=Arabidopsis thaliana OX=3702 GN=TOM20-1 PE=1 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 1.430e-10
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 2 
Query:  806 EAVSKLEEALAINPKKHDTLWCLGNAYTSQAFLIPDQEEAKPYFDKAAEYFQQAV 970
            +A+SKLE+A+ I+P KHD +WCLGNAYTS A L PD  +A+  F  A  +F  AV
Sbjct:   53 DAISKLEDAILIDPMKHDAVWCLGNAYTSYARLTPDDTQARLNFGLAYLFFGIAV 107
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_01560 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 7
Match NameE-valueIdentityDescription
TOM20_SOLTU9.887e-1865.52Mitochondrial import receptor subunit TOM20 OS=Sol... [more]
TO202_ARATH6.083e-1664.91Mitochondrial import receptor subunit TOM20-2 OS=A... [more]
TO203_ARATH9.233e-1664.91Mitochondrial import receptor subunit TOM20-3 OS=A... [more]
TO204_ARATH3.084e-1257.89Mitochondrial import receptor subunit TOM20-4 OS=A... [more]
TOM20_ORYSI5.294e-1157.14Probable mitochondrial import receptor subunit TOM... [more]
TOM20_ORYSJ5.395e-1157.14Probable mitochondrial import receptor subunit TOM... [more]
TO201_ARATH1.430e-1054.55Mitochondrial import receptor subunit TOM20-1 OS=A... [more]
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF06552TOM20_plantcoord: 8..196
e-value: 7.1E-93
score: 309.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 144..167
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 151..165
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..152
e-value: 8.4E-69
score: 232.0
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 14..127

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_01560_La_Tanjil_v1.0 ID=rna-TanjilR_01560_La_Tanjil_v1.0; Name=rna-TanjilR_01560; organism=Lupinus angustifolius; type=mRNA; length=2943bp
ATGGATTTGCAACAGAATGAGTTCGATCGCCTCTTCTTCTTCGAGCATGC
TCGCAAAACTGCAGAAGCCGAATACGCCATAAACCCTCTCGATGCTGACg
tcagatttccctctttctctatacctatttttatttattattattattat
tattaatttgataGACTTATTTCGTTTTTTTTTTTCTGAATTGGTCTAAT
ATTTGTTTGTGGATTATTTTTCTGAATGAAATTTTAGCAAATAATTTGTT
TActgaaaatttaatatttgcAGAATTTGACAAGATGGGGAGGAGCTTTA
TTAGAGTTATCTCAGTTTCAGGGTTTGCctgaatcaaagaaaatgacCCA
AGGTGCTAATTCATTGTCCtgtgtttttttttcttatgtaaagttaaatt
ttttgtattaaattgtATCTGGGTTGTTTGTTTAAACTTGAAATATGCAA
TGCTTAtggttattaaaaaaattagaggaATTTTCATTTATTGTATTAGT
CTTTTGAATTTCCAGAAAGTGAAAAAAATGCAGTGTGGAACTTATAAGAG
AGTGTTTATGattagttgtttttttttcttagttgatatttttatagata
attatGAGAATGCggccttttttttttttttcattttgtgatcaaaatgt
aaaaaaaaatgtgtgtTGTGCTCTGTCATTATCTATGAGAAATATCaatt
gaaaatggaaaataacGAACGTACCAAACATCCCCTAGTATTATGGTGAA
CATTCCAGaactttgattttgaattttcaattgtgGGTTTCTCATTTGAT
TTGCAGAGGCTGTTTCCAAGCTGGAGGAGGCATTGGCGATTAATCCCAAG
AAGCATGATACTCTATGGTGCCTGGGAAATGCTTACACTTCACAGGCATT
TTTAATTCCAGATCAGGAGGAGGCCAAACCTTATTTTGATAAGGCAGCTG
AGTACTTTCAGCAAGCTGTTGATGAGGTACGTTTTCGGTCTGACTCCAGT
TACACTCTCATTgatgtttagggtttagggttcagCAAGCTTTTGATGAG
GTACGTTTTCGGTCTGAAACCAGTTACACTCTCATCGATGTATGAGAAGA
AGCTTAGTActttgtcaaaataatttgtaacaGTGTCATTCTGTTTTCTA
TAGGATTCTACAAATGAACTTTACCAGAAATCGTTGGAAGTGGCTGCCAA
GGTATGTTATTTTTCGGAATGGATTTGTATTCTATTATAATGCATTCGTG
CTGTTGGAAAGCTATGATACGTCAGTGTAATATGGAAATGGGCAAATGGC
TATTGCAATTTTTTTCAGTTTTGAAATGGGTTTTTTAATCTGTTTCCTGT
CTTGGTACAGAAAACTAAAATCTAGGTTGAGTGGCAAAGAAAggaaatat
tattagaaaataagggATAACTTTACAAGGGGATAAGAAATCCTCTGACA
CAAAGAAATACCTAGAAACTACTCAAAAGGGACATACAAGTATGCAACAA
AGCATGCCAATCTCTCTTCATATCTACCCCGTCCCGATATTGAGCTCATT
TACGCCGGAGTATACCTAAATGTAACCCTATAAATTGTATTGTTCCTTTT
TAGCCAAATACACTCCTGGACTGCAAAAAATGATCATTGTCATCTTTATG
AGAACCAAAACTGAACCAATTTAGTAAGCAGGAAAAGTGCAAGTCCAAAG
GGAAAATCATAGGCGGCCGGAAGATACTGAACAACCTATGCCAACAATAT
TGATACAGAGGAGAGTAGGACTATAAAGAGATGGTTGATTCGTGAATGCT
GAATAAAATCAATATGGCGTAGGACCTTGACATATTCtattgatgaatta
tatataaacacatTGACTGATTGAgtgttttttaattgaaaataattcat
GTTTACCCTGCTAAATGTTAATACTTAATAGCTATTCACTGTTTGTGGCC
TTGTATGTGGTCAAAGATTTGAGTTTGTCTACCAGTTTCACAAAGTATTT
GGACTATGCTTTCAAACTGATATGTTcctttttgtatttatttatgtttc
tgTCCGCTGGTGTTTTTGGAGGGTAACATATCATCCTGCCTTATATTCTC
ATTCTTGCTAATATACTCTTGTTCATTGAAAAAATTGCTCACCAACATGT
TCTCAAACTGTCACCGGACAAATTCAGTTACTAACACCTATTTTTTGAAG
GCTCCTGAGCTGCATGTAGAAATCCATAAGCACGGGTTTGGTCAACAGCA
GCAGGCAGCCGGGCCAGCTGGACCTTCTACTTCTTCAGGCACAAAGGTAA
TGCTTAGAAGTTTCAGCTGTCTGTCTCTACCTTgcttttttttgtgatta
atgcaatttcatatttttctgtTGATTTCTTTACGCACCCATACATAGTa
tatgttttgaaattttaatgaATTGTTTTGGCACTGAGGTTTAGTTACTT
AAGTTCATGtgtttatcaatatataaatgttcTCTGGTTGTGGGCACGTT
CAAGGAGTGTTGTTGCAGTGAAATAATGAACTTGTTCACTGGAATATACT
GTGCCTTTCTGTtgaaatcatgttttattgttaACTACAAGTAGTTAGAT
TTTTTAGAAGCAAAACTGCATCATTAACTTTGTTCGGAATTCAGGTTCCC
TGACTTGTGTACTTGTGGGATTAAGAGTGATTGAATTAATGTCATGGTGA
ATTCGGCCTTTGAAATGGATAGTGTGTgtgtgtattttatttttaaggag
ATGTGCAAATATGTAGGTAGAAACTGACATTGATAtttgtttggttttgt
tttttcagactcaaaagaaaaagaaaagcagtGATCTGAAGTATGACATA
TTTGGATGGGTAATTCTGGCAGTTGGCATTGTTGCGTGGGTGGGATTTGC
GAAATCCAACATGCCACCGCCTCCTCCTCCACCACATCGATAA
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protein sequence of rna-TanjilR_01560_La_Tanjil_v1.0

>rna-TanjilR_01560_La_Tanjil_v1.0 ID=rna-TanjilR_01560_La_Tanjil_v1.0; Name=rna-TanjilR_01560_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=208bp
MDLQQNEFDRLFFFEHARKTAEAEYAINPLDADNLTRWGGALLELSQFQG
LPESKKMTQEAVSKLEEALAINPKKHDTLWCLGNAYTSQAFLIPDQEEAK
PYFDKAAEYFQQAVDEDSTNELYQKSLEVAAKAPELHVEIHKHGFGQQQQ
AAGPAGPSTSSGTKTQKKKKSSDLKYDIFGWVILAVGIVAWVGFAKSNMP
PPPPPPHR
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mRNA from alignment at Chr_LG20-CM007380.1:20927696..20930638+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_01560_La_Tanjil_v1.0 ID=rna-TanjilR_01560_La_Tanjil_v1.0; Name=rna-TanjilR_01560; organism=Lupinus angustifolius; type=mRNA; length=2943bp; location=Sequence derived from: Chr_LG20-CM007380.1:20927696..20930638+ (Lupinus angustifolius
ATGGATTTGCAACAGAATGAGTTCGATCGCCTCTTCTTCTTCGAGCATGC
TCGCAAAACTGCAGAAGCCGAATACGCCATAAACCCTCTCGATGCTGACg
tcagatttccctctttctctatacctatttttatttattattattattat
tattaatttgataGACTTATTTCGTTTTTTTTTTTCTGAATTGGTCTAAT
ATTTGTTTGTGGATTATTTTTCTGAATGAAATTTTAGCAAATAATTTGTT
TActgaaaatttaatatttgcAGAATTTGACAAGATGGGGAGGAGCTTTA
TTAGAGTTATCTCAGTTTCAGGGTTTGCctgaatcaaagaaaatgacCCA
AGGTGCTAATTCATTGTCCtgtgtttttttttcttatgtaaagttaaatt
ttttgtattaaattgtATCTGGGTTGTTTGTTTAAACTTGAAATATGCAA
TGCTTAtggttattaaaaaaattagaggaATTTTCATTTATTGTATTAGT
CTTTTGAATTTCCAGAAAGTGAAAAAAATGCAGTGTGGAACTTATAAGAG
AGTGTTTATGattagttgtttttttttcttagttgatatttttatagata
attatGAGAATGCggccttttttttttttttcattttgtgatcaaaatgt
aaaaaaaaatgtgtgtTGTGCTCTGTCATTATCTATGAGAAATATCaatt
gaaaatggaaaataacGAACGTACCAAACATCCCCTAGTATTATGGTGAA
CATTCCAGaactttgattttgaattttcaattgtgGGTTTCTCATTTGAT
TTGCAGAGGCTGTTTCCAAGCTGGAGGAGGCATTGGCGATTAATCCCAAG
AAGCATGATACTCTATGGTGCCTGGGAAATGCTTACACTTCACAGGCATT
TTTAATTCCAGATCAGGAGGAGGCCAAACCTTATTTTGATAAGGCAGCTG
AGTACTTTCAGCAAGCTGTTGATGAGGTACGTTTTCGGTCTGACTCCAGT
TACACTCTCATTgatgtttagggtttagggttcagCAAGCTTTTGATGAG
GTACGTTTTCGGTCTGAAACCAGTTACACTCTCATCGATGTATGAGAAGA
AGCTTAGTActttgtcaaaataatttgtaacaGTGTCATTCTGTTTTCTA
TAGGATTCTACAAATGAACTTTACCAGAAATCGTTGGAAGTGGCTGCCAA
GGTATGTTATTTTTCGGAATGGATTTGTATTCTATTATAATGCATTCGTG
CTGTTGGAAAGCTATGATACGTCAGTGTAATATGGAAATGGGCAAATGGC
TATTGCAATTTTTTTCAGTTTTGAAATGGGTTTTTTAATCTGTTTCCTGT
CTTGGTACAGAAAACTAAAATCTAGGTTGAGTGGCAAAGAAAggaaatat
tattagaaaataagggATAACTTTACAAGGGGATAAGAAATCCTCTGACA
CAAAGAAATACCTAGAAACTACTCAAAAGGGACATACAAGTATGCAACAA
AGCATGCCAATCTCTCTTCATATCTACCCCGTCCCGATATTGAGCTCATT
TACGCCGGAGTATACCTAAATGTAACCCTATAAATTGTATTGTTCCTTTT
TAGCCAAATACACTCCTGGACTGCAAAAAATGATCATTGTCATCTTTATG
AGAACCAAAACTGAACCAATTTAGTAAGCAGGAAAAGTGCAAGTCCAAAG
GGAAAATCATAGGCGGCCGGAAGATACTGAACAACCTATGCCAACAATAT
TGATACAGAGGAGAGTAGGACTATAAAGAGATGGTTGATTCGTGAATGCT
GAATAAAATCAATATGGCGTAGGACCTTGACATATTCtattgatgaatta
tatataaacacatTGACTGATTGAgtgttttttaattgaaaataattcat
GTTTACCCTGCTAAATGTTAATACTTAATAGCTATTCACTGTTTGTGGCC
TTGTATGTGGTCAAAGATTTGAGTTTGTCTACCAGTTTCACAAAGTATTT
GGACTATGCTTTCAAACTGATATGTTcctttttgtatttatttatgtttc
tgTCCGCTGGTGTTTTTGGAGGGTAACATATCATCCTGCCTTATATTCTC
ATTCTTGCTAATATACTCTTGTTCATTGAAAAAATTGCTCACCAACATGT
TCTCAAACTGTCACCGGACAAATTCAGTTACTAACACCTATTTTTTGAAG
GCTCCTGAGCTGCATGTAGAAATCCATAAGCACGGGTTTGGTCAACAGCA
GCAGGCAGCCGGGCCAGCTGGACCTTCTACTTCTTCAGGCACAAAGGTAA
TGCTTAGAAGTTTCAGCTGTCTGTCTCTACCTTgcttttttttgtgatta
atgcaatttcatatttttctgtTGATTTCTTTACGCACCCATACATAGTa
tatgttttgaaattttaatgaATTGTTTTGGCACTGAGGTTTAGTTACTT
AAGTTCATGtgtttatcaatatataaatgttcTCTGGTTGTGGGCACGTT
CAAGGAGTGTTGTTGCAGTGAAATAATGAACTTGTTCACTGGAATATACT
GTGCCTTTCTGTtgaaatcatgttttattgttaACTACAAGTAGTTAGAT
TTTTTAGAAGCAAAACTGCATCATTAACTTTGTTCGGAATTCAGGTTCCC
TGACTTGTGTACTTGTGGGATTAAGAGTGATTGAATTAATGTCATGGTGA
ATTCGGCCTTTGAAATGGATAGTGTGTgtgtgtattttatttttaaggag
ATGTGCAAATATGTAGGTAGAAACTGACATTGATAtttgtttggttttgt
tttttcagactcaaaagaaaaagaaaagcagtGATCTGAAGTATGACATA
TTTGGATGGGTAATTCTGGCAGTTGGCATTGTTGCGTGGGTGGGATTTGC
GAAATCCAACATGCCACCGCCTCCTCCTCCACCACATCGATAA
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Coding sequence (CDS) from alignment at Chr_LG20-CM007380.1:20927696..20930638+

>rna-TanjilR_01560_La_Tanjil_v1.0 ID=rna-TanjilR_01560_La_Tanjil_v1.0; Name=rna-TanjilR_01560; organism=Lupinus angustifolius; type=CDS; length=627bp; location=Sequence derived from: Chr_LG20-CM007380.1:20927696..20930638+ (Lupinus angustifolius
ATGGATTTGCAACAGAATGAGTTCGATCGCCTCTTCTTCTTCGAGCATGC
TCGCAAAACTGCAGAAGCCGAATACGCCATAAACCCTCTCGATGCTGACA
ATTTGACAAGATGGGGAGGAGCTTTATTAGAGTTATCTCAGTTTCAGGGT
TTGCctgaatcaaagaaaatgacCCAAGAGGCTGTTTCCAAGCTGGAGGA
GGCATTGGCGATTAATCCCAAGAAGCATGATACTCTATGGTGCCTGGGAA
ATGCTTACACTTCACAGGCATTTTTAATTCCAGATCAGGAGGAGGCCAAA
CCTTATTTTGATAAGGCAGCTGAGTACTTTCAGCAAGCTGTTGATGAGGA
TTCTACAAATGAACTTTACCAGAAATCGTTGGAAGTGGCTGCCAAGGCTC
CTGAGCTGCATGTAGAAATCCATAAGCACGGGTTTGGTCAACAGCAGCAG
GCAGCCGGGCCAGCTGGACCTTCTACTTCTTCAGGCACAAAGactcaaaa
gaaaaagaaaagcagtGATCTGAAGTATGACATATTTGGATGGGTAATTC
TGGCAGTTGGCATTGTTGCGTGGGTGGGATTTGCGAAATCCAACATGCCA
CCGCCTCCTCCTCCACCACATCGATAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding