rna-TanjilR_01560
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_01560 vs. DB:Swiss
Match: TOM20_SOLTU (Mitochondrial import receptor subunit TOM20 OS=Solanum tuberosum OX=4113 GN=TOM20 PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 9.887e-18 Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 2 Query: 800 FAEAVSKLEEALAINPKKHDTLWCLGNAYTSQAFLIPDQEEAKPYFDKAAEYFQQAVD 973
++A SKLEEAL +NP+KHD LWCLGNA+TS FL PD +EAK YF+KA + FQQA D
Sbjct: 57 ISDATSKLEEALTVNPEKHDALWCLGNAHTSHVFLTPDMDEAKVYFEKATQCFQQAFD 114 HSP 2 Score: 61.2326 bits (147), Expect = 3.748e-9 Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 1 Query: 2833 DLKYDIFGWVILAVGIVAWVGFAKSNM 2913
DLKYDIFGWVILAVGIVAWVGFAKSNM
Sbjct: 169 DLKYDIFGWVILAVGIVAWVGFAKSNM 195
BLAST of rna-TanjilR_01560 vs. DB:Swiss
Match: TO202_ARATH (Mitochondrial import receptor subunit TOM20-2 OS=Arabidopsis thaliana OX=3702 GN=TOM20-2 PE=1 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 6.083e-16 Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 2 Query: 806 EAVSKLEEALAINPKKHDTLWCLGNAYTSQAFLIPDQEEAKPYFDKAAEYFQQAVDE 976
+A+SKLEEAL INP KH LWC+ NAYT+ AF + D EEAK +FDKA EYFQ+A +E
Sbjct: 60 DAISKLEEALTINPGKHQALWCIANAYTAHAFYVHDPEEAKEHFDKATEYFQRAENE 116
BLAST of rna-TanjilR_01560 vs. DB:Swiss
Match: TO203_ARATH (Mitochondrial import receptor subunit TOM20-3 OS=Arabidopsis thaliana OX=3702 GN=TOM20-3 PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 9.233e-16 Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = 2 Query: 806 EAVSKLEEALAINPKKHDTLWCLGNAYTSQAFLIPDQEEAKPYFDKAAEYFQQAVDE 976
EA++K EEAL I+PKK + +WC+GNAYTS AFL PD+ EAK FD A ++FQQAVDE
Sbjct: 59 EAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115 HSP 2 Score: 54.299 bits (129), Expect = 7.853e-7 Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 1 Query: 2815 KKKKSSDLKYDIFGWVILAVGIVAWVGFAKSNM 2913
K KKSSD KYD GWVILA+G+VAW+ FAK+N+
Sbjct: 164 KNKKSSDAKYDAMGWVILAIGVVAWISFAKANV 196
BLAST of rna-TanjilR_01560 vs. DB:Swiss
Match: TO204_ARATH (Mitochondrial import receptor subunit TOM20-4 OS=Arabidopsis thaliana OX=3702 GN=TOM20-4 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 3.084e-12 Identity = 33/57 (57.89%), Postives = 42/57 (73.68%), Query Frame = 2 Query: 806 EAVSKLEEALAINPKKHDTLWCLGNAYTSQAFLIPDQEEAKPYFDKAAEYFQQAVDE 976
EA+ KL EAL I+PKKHD LW +GNA+ S FL DQ EA F+KA+++FQ AV+E
Sbjct: 57 EAILKLGEALVIDPKKHDALWLIGNAHLSFGFLSSDQTEASDNFEKASQFFQLAVEE 113
BLAST of rna-TanjilR_01560 vs. DB:Swiss
Match: TOM20_ORYSI (Probable mitochondrial import receptor subunit TOM20 OS=Oryza sativa subsp. indica OX=39946 GN=TOM20 PE=2 SV=2) HSP 1 Score: 66.6254 bits (161), Expect = 5.294e-11 Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 2 Query: 806 EAVSKLEEALAINPKKHDTLWCLGNAYTSQAFLIPDQEEAKPYFDKAAEYFQQAVD 973
+A SKLEEAL I+P K D LWCLGNA TS F D +A +F+KA + FQ+AVD
Sbjct: 61 DAESKLEEALKIDPMKADALWCLGNAQTSHGFFTSDTVKANEFFEKATQCFQKAVD 116
BLAST of rna-TanjilR_01560 vs. DB:Swiss
Match: TOM20_ORYSJ (Probable mitochondrial import receptor subunit TOM20 OS=Oryza sativa subsp. japonica OX=39947 GN=TOM20 PE=2 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 5.395e-11 Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 2 Query: 806 EAVSKLEEALAINPKKHDTLWCLGNAYTSQAFLIPDQEEAKPYFDKAAEYFQQAVD 973
+A SKLEEAL I+P K D LWCLGNA TS F D +A +F+KA + FQ+AVD
Sbjct: 61 DAESKLEEALKIDPMKADALWCLGNAQTSHGFFTSDTVKANEFFEKATQCFQKAVD 116 HSP 2 Score: 55.4546 bits (132), Expect = 3.187e-7 Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 1 Query: 2806 QTQKKKKSSDLKYDIFGWVILAVGIVAWVGFAKSN 2910
Q++KKKK SD YD+FGWV+L VG+V WVG AKSN
Sbjct: 161 QSRKKKKDSDFWYDVFGWVVLGVGMVVWVGLAKSN 195
BLAST of rna-TanjilR_01560 vs. DB:Swiss
Match: TO201_ARATH (Mitochondrial import receptor subunit TOM20-1 OS=Arabidopsis thaliana OX=3702 GN=TOM20-1 PE=1 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 1.430e-10 Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 2 Query: 806 EAVSKLEEALAINPKKHDTLWCLGNAYTSQAFLIPDQEEAKPYFDKAAEYFQQAV 970
+A+SKLE+A+ I+P KHD +WCLGNAYTS A L PD +A+ F A +F AV
Sbjct: 53 DAISKLEDAILIDPMKHDAVWCLGNAYTSYARLTPDDTQARLNFGLAYLFFGIAV 107 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_01560 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 7 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_01560_La_Tanjil_v1.0 ID=rna-TanjilR_01560_La_Tanjil_v1.0; Name=rna-TanjilR_01560; organism=Lupinus angustifolius; type=mRNA; length=2943bpback to top protein sequence of rna-TanjilR_01560_La_Tanjil_v1.0 >rna-TanjilR_01560_La_Tanjil_v1.0 ID=rna-TanjilR_01560_La_Tanjil_v1.0; Name=rna-TanjilR_01560_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=208bpback to top mRNA from alignment at Chr_LG20-CM007380.1:20927696..20930638+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_01560_La_Tanjil_v1.0 ID=rna-TanjilR_01560_La_Tanjil_v1.0; Name=rna-TanjilR_01560; organism=Lupinus angustifolius; type=mRNA; length=2943bp; location=Sequence derived from: Chr_LG20-CM007380.1:20927696..20930638+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG20-CM007380.1:20927696..20930638+ >rna-TanjilR_01560_La_Tanjil_v1.0 ID=rna-TanjilR_01560_La_Tanjil_v1.0; Name=rna-TanjilR_01560; organism=Lupinus angustifolius; type=CDS; length=627bp; location=Sequence derived from: Chr_LG20-CM007380.1:20927696..20930638+ (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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