rna-TanjilR_02502

Transcript Overview
Namerna-TanjilR_02502
Unique Namerna-TanjilR_02502_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length378
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG02-CM007362.1supercontigChr_LG02-CM007362.1:3422393..3422770 +Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL160Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL324Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR473Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR0745Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0751Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaR0623Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0629Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccR0808Cajanus cajan Asha genome v1.0Cajanus cajan
ancaR0657Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0663Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anpsR0520Pisum sativum Cameor genome v1aPisum sativum
anpsR0525Pisum sativum Cameor genome v1aPisum sativum
anpvR0694Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0718Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0597Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0624Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anzwsR0601Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR0606Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
antifR0632Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0631Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR0639Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0639Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvrvR0583Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR0565Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR0594Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0705Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0707Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR0569Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0606Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR0646Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0658Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0609Cicer arietinum
ancarR0642Cicer arietinum
ancarR0648Cicer arietinum
anccaR0600Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0609Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0672Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0714Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR0670Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0686Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvstR0710Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0721Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0724Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0735Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvunR0572Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR0597Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR0724Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR0749Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_02502gene-TanjilG_02502_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_02502rna-TanjilR_02502_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_02502_La_Tanjil_v1.0rna-TanjilR_02502_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_02502_La_Tanjil_v1.0-exon-Chr_LG02-CM007362.1_La_Tanjil_v1.0-1579734366:3422393..3422770rna-TanjilR_02502_La_Tanjil_v1.0-exon-Chr_LG02-CM007362.1_La_Tanjil_v1.0-1579734366:3422393..3422770Lupinus angustifoliusexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_02502_La_Tanjil_v1.0-CDS-Chr_LG02-CM007362.1_La_Tanjil_v1.0-1579734366:3422393..3422770rna-TanjilR_02502_La_Tanjil_v1.0-CDS-Chr_LG02-CM007362.1_La_Tanjil_v1.0-1579734366:3422393..3422770Lupinus angustifoliusCDS


Homology
BLAST of rna-TanjilR_02502 vs. DB:Swiss
Match: SPH5_ARATH (S-protein homolog 5 OS=Arabidopsis thaliana OX=3702 GN=SPH5 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.248e-21
Identity = 42/94 (44.68%), Postives = 53/94 (56.38%), Query Frame = 1
Query:   49 FWPIAHVHIKNELLNGINLELQCKSKDDDLGIHIVPAGNEYQFQFRPNYFGTTLFYCGLVWDGPVHTLDAYVYQRDNDLCIKDCYWLIYETQAC 330
            FW    V + N L+ G  L + CKSK DDLGIH+VP   EY F+F+PN + +TLF+C   WD    + D Y  QRD  +C  DC W I     C
Sbjct:   25 FWRATVVTMTN-LIGGPPLTIHCKSKQDDLGIHVVPFKQEYHFKFQPNLWKSTLFFCSFQWDSQFKSFDIYDAQRDQGIC-DDCQWEIKPDGPC 116          
BLAST of rna-TanjilR_02502 vs. DB:Swiss
Match: SPH29_ARATH (S-protein homolog 29 OS=Arabidopsis thaliana OX=3702 GN=SPH29 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.536e-16
Identity = 38/103 (36.89%), Postives = 54/103 (52.43%), Query Frame = 1
Query:   67 VHIKNELLNGINLELQCKSKDDDLGIHIVPAGNEYQFQFRPNYFGTTLFYCGLVWDGPVHTLDAYVYQRDNDLCIKDCYWLIYETQACLRYD-NSTSLRCHKW 372
            V + N +     L + C+SKDDDLG H++  G  + ++FRP++F TTLF C  +W+  V   D Y   RD   C   C W I    AC+  + N    RC+ W
Sbjct:   33 VTVTNNISPQTTLTISCRSKDDDLGEHLLLHGQAFLWKFRPSWFRTTLFTCKFLWNNNVKWFDTYRSDRDQGHCY-SCNWSINADSACISGNFNKKFDRCYPW 134          
BLAST of rna-TanjilR_02502 vs. DB:Swiss
Match: S1_PAPRH (Self-incompatibility protein S1 OS=Papaver rhoeas OX=33128 GN=S1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.876e-16
Identity = 39/106 (36.79%), Postives = 56/106 (52.83%), Query Frame = 1
Query:    7 LLVLLIGLSEGRVFFWPIAHVHIKNELLNGINLELQCKSKDDDLGIHIVPAGNEYQFQFRPNYFGTTLFYCGLVWDGPVH-TLDAYVYQRDND-LCIKDCYWLIYE 318
            LL   +  S G   F+P+  V I N   NG ++ + C+SKD+DL    V +G++  F FR ++F TT FYC L WD        +Y  +RD+D  C   C W I +
Sbjct:    9 LLSFFLSKSSG---FFPVIEVRIMNRRGNGRSIGIHCRSKDNDLQNQTVTSGHDMSFSFREDFFHTTHFYCDLQWDKETKFGFYSYQAKRDDDGRCSSQCLWKIMD 111          
BLAST of rna-TanjilR_02502 vs. DB:Swiss
Match: SPH3_ARATH (S-protein homolog 3 OS=Arabidopsis thaliana OX=3702 GN=SPH3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.576e-15
Identity = 43/129 (33.33%), Postives = 63/129 (48.84%), Query Frame = 1
Query:   10 LVLLIGLSEGRVFF---WPIAH-VHIKNELLNGINLELQCKSKDDDLGIHIVPAGNEYQFQFRPNYFGTTLFYCGLVWDGPVHTLDAYVYQRD---NDLCIKDCYWLIYETQACLRYDNSTSLR-CHKW 372
            L++ I  S+ +  F   W  +  V I N L +G+ L L CKS DDDLG+ I+     + F+FR +  GTTLFYC   W G     D Y   RD   + +   +C W I     C+  ++  +   C+ W
Sbjct:   16 LLIKIAFSQVKTDFDVNWSTSKMVRITNRLGDGLTLNLHCKSADDDLGLKILAPNGSWSFKFRTSIVGTTLFYCHFTWPGQSKRFDIYDDDRDGVRSHISCINCIWDISIQGPCMFSESDHAFNICYDW 144          
BLAST of rna-TanjilR_02502 vs. DB:Swiss
Match: SPH2_ARATH (S-protein homolog 2 OS=Arabidopsis thaliana OX=3702 GN=SPH2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.746e-14
Identity = 41/119 (34.45%), Postives = 53/119 (44.54%), Query Frame = 1
Query:   31 SEGRVFFWPIAHVHIKNELLNGINLELQCKSKDDDLGIHIVPAGNEYQFQFRPNYFGTTLFYCGLVWDGPVHTLDAYVYQRD---NDLCIKD-CYWLIYETQACLRYDNSTSLR-CHKW 372
            S   VF      V I N+L N + L   CKSKDDDLG   +  G  + F F   +FG TL++C   W    H+ D Y   RD   ++ C  D C W I     C   D +     C+ W
Sbjct:   38 STNSVFPTSKRTVEINNDLGNQLTLLYHCKSKDDDLGNRTLQPGESWSFSFGRQFFGRTLYFCSFSWPNESHSFDIYKDHRDSGGDNKCESDRCVWKIRRNGPCRFNDETKQFDLCYPW 156          
BLAST of rna-TanjilR_02502 vs. DB:Swiss
Match: SPH20_ARATH (S-protein homolog 20 OS=Arabidopsis thaliana OX=3702 GN=SPH20 PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.634e-11
Identity = 35/110 (31.82%), Postives = 53/110 (48.18%), Query Frame = 1
Query:    4 FLLVLLIGLSEGRVFFWPIAHVHIKNELLNGINLELQCKSKDDDLGIHIVPAGNEYQFQFRPNYFGTTLFYCGLVWDGPVHTLDAYVYQRDNDLCIK-DCYWLIYETQAC 330
            F++ L  GL E  V    + +V I N++   + L L CKSKD DLG   +     + F+   +++G TLF+C   W+      D  V  RD + C +  C W I  +  C
Sbjct:   15 FMVFLFGGLCEAGV----VVNVDIINDIGPNVQLGLHCKSKDKDLGPQSLAPQQHWGFRKTLDFWGVTLFFCHFEWENQSKWFDILVAGRDRNTCAEHPCVWSIRPSGPC 120          
BLAST of rna-TanjilR_02502 vs. DB:Swiss
Match: SPH4_ARATH (S-protein homolog 4 OS=Arabidopsis thaliana OX=3702 GN=SPH4 PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 4.103e-11
Identity = 32/85 (37.65%), Postives = 44/85 (51.76%), Query Frame = 1
Query:   67 VHIKNELLNGINLELQCKSKDDDLGIHIVPAGNEYQFQFRPNYF-GTTLFYCGLVWDGPVHTLDAYVYQRDNDLCIKDCYWLIYE 318
            V I N L +G  L+L CKS DDDLG+ I+     + F+FRP+   G TLF+C   W G     + Y   RD       C + I++
Sbjct:   40 VTITNRLGDGSTLKLHCKSADDDLGLKILAPNGSWSFKFRPSIVPGVTLFFCHFTWPGQSKWFNIYDDDRDGVRMGIPCIYCIWD 124          
BLAST of rna-TanjilR_02502 vs. DB:Swiss
Match: SPH18_ARATH (S-protein homolog 18 OS=Arabidopsis thaliana OX=3702 GN=SPH18 PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 1.137e-9
Identity = 38/126 (30.16%), Postives = 53/126 (42.06%), Query Frame = 1
Query:    1 MFLLVLLIGLSEGRVFFWPIAHVHIKNELLNGI----NLELQCKSKDDDLGIHIVPAGNEYQFQFRPNYFGTTLFYCGLVWDGPVHTLDAYVYQRDNDLC-IKDCYWLIYETQACLRYDNSTSLRC 363
            + +  L +GL E        AH HI  +++N I     L L CKSK  DLG   +     + F    N + TTLF+C  VW+      D    +RD  +C    C W I  +  C   D+     C
Sbjct:   13 ILIAFLFVGLCE--------AHRHINVDIINDIGPNVQLGLHCKSKGKDLGPQSLAPHQHWGFTASLNVWETTLFFCHFVWENQSRWFDILKEKRDTIVCKYHPCVWSIRPSGPCRLTDHEKCYPC 130          
BLAST of rna-TanjilR_02502 vs. DB:Swiss
Match: SPH6_ARATH (S-protein homolog 6 OS=Arabidopsis thaliana OX=3702 GN=SPH6 PE=3 SV=2)

HSP 1 Score: 52.7582 bits (125), Expect = 1.677e-8
Identity = 38/111 (34.23%), Postives = 56/111 (50.45%), Query Frame = 1
Query:    7 LLVLLIGLS----EGRVF--FWPIAHVHIKNELLNGINLELQCKSKDDDLGIHIVPAGNEYQFQFRPNYFGTTLFYCGLVWDG-PVHTLDAYVYQRDNDLCIKDCYWLIYE 318
            +L+ LIG      +G+VF    P+  V I N+  N   L + CKS+DDD G HI+  G  Y + F  N+  +TL++CG   +       D Y   RD+  C ++C W   E
Sbjct:    8 VLISLIGCETLQHDGKVFPMKGPLTRVVIYND--NDYLLGVHCKSRDDDHGFHILQKGGLYGWMFYVNFMNSTLYFCGFSQEQVKKGVFDIYKAVRDSSRC-RNCTWEAKE 115          
BLAST of rna-TanjilR_02502 vs. DB:Swiss
Match: SPH19_ARATH (S-protein homolog 19 OS=Arabidopsis thaliana OX=3702 GN=SPH19 PE=3 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 5.526e-8
Identity = 31/109 (28.44%), Postives = 49/109 (44.95%), Query Frame = 1
Query:    4 FLLVLLIGLSEGRVFFWPIAHVHIKNELLNGINLELQCKSKDDDLGIHIVPAGNEYQFQFRPNYFGTTLFYCGLVWDGPVHTLDAYVYQRDNDLCIKDCYWLIYETQAC 330
            F++    GL E R       +V + N++   + L L CKSK+ DLG   + +   + F+    ++  TLF+C   W+      D +V  RD   C   C W I  +  C
Sbjct:   15 FMVFFFGGLCEARG-----VNVDLINDIGPNVQLGLHCKSKNKDLGSQSLVSDQHWGFRASLGFWTVTLFFCHFEWENQSKWFDIFVEDRDL-TCGDHCVWSIRPSGPC 117          
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_02502 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
SPH5_ARATH8.248e-2144.68S-protein homolog 5 OS=Arabidopsis thaliana OX=370... [more]
SPH29_ARATH2.536e-1636.89S-protein homolog 29 OS=Arabidopsis thaliana OX=37... [more]
S1_PAPRH4.876e-1636.79Self-incompatibility protein S1 OS=Papaver rhoeas ... [more]
SPH3_ARATH1.576e-1533.33S-protein homolog 3 OS=Arabidopsis thaliana OX=370... [more]
SPH2_ARATH1.746e-1434.45S-protein homolog 2 OS=Arabidopsis thaliana OX=370... [more]
SPH20_ARATH1.634e-1131.82S-protein homolog 20 OS=Arabidopsis thaliana OX=37... [more]
SPH4_ARATH4.103e-1137.65S-protein homolog 4 OS=Arabidopsis thaliana OX=370... [more]
SPH18_ARATH1.137e-930.16S-protein homolog 18 OS=Arabidopsis thaliana OX=37... [more]
SPH6_ARATH1.677e-834.23S-protein homolog 6 OS=Arabidopsis thaliana OX=370... [more]
SPH19_ARATH5.526e-828.44S-protein homolog 19 OS=Arabidopsis thaliana OX=37... [more]
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010264Plant self-incompatibility S1PFAMPF05938Self-incomp_S1coord: 22..124
e-value: 3.6E-26
score: 91.7

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_02502_La_Tanjil_v1.0 ID=rna-TanjilR_02502_La_Tanjil_v1.0; Name=rna-TanjilR_02502; organism=Lupinus angustifolius; type=mRNA; length=378bp
ATGTTCCTGCTAGTCTTACTTATAGGTTTGAGTGAGGGAAGAGTATTCTT
CTGGCCTATAGCGCATGTTCACATAAAGAATGAACTGCTAAATGGTATAA
ATCTTGAACTTCAATGTAAATCCAAAGATGATGACCTTGGAATTCATATT
GTTCCTGCTGGGAATGAATATCAGTTCCAATTTCGTCCAAATTATTTCGG
AACTACACTGTTTTACTGCGGCTTGGTTTGGGATGGACCAGTACACACGC
TTGATGCTTATGTTTATCAAAGAGACAATGACTTGTGCATCAAAGATTGT
TACTGGTTAATATATGAAACTCAAGCATGTCTCCGTTATGACAATTCAAC
TTCTCTAAGATGCCATAAATGGACGTAA
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protein sequence of rna-TanjilR_02502_La_Tanjil_v1.0

>rna-TanjilR_02502_La_Tanjil_v1.0 ID=rna-TanjilR_02502_La_Tanjil_v1.0; Name=rna-TanjilR_02502_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=125bp
MFLLVLLIGLSEGRVFFWPIAHVHIKNELLNGINLELQCKSKDDDLGIHI
VPAGNEYQFQFRPNYFGTTLFYCGLVWDGPVHTLDAYVYQRDNDLCIKDC
YWLIYETQACLRYDNSTSLRCHKWT
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mRNA from alignment at Chr_LG02-CM007362.1:3422393..3422770+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_02502_La_Tanjil_v1.0 ID=rna-TanjilR_02502_La_Tanjil_v1.0; Name=rna-TanjilR_02502; organism=Lupinus angustifolius; type=mRNA; length=378bp; location=Sequence derived from: Chr_LG02-CM007362.1:3422393..3422770+ (Lupinus angustifolius
ATGTTCCTGCTAGTCTTACTTATAGGTTTGAGTGAGGGAAGAGTATTCTT CTGGCCTATAGCGCATGTTCACATAAAGAATGAACTGCTAAATGGTATAA ATCTTGAACTTCAATGTAAATCCAAAGATGATGACCTTGGAATTCATATT GTTCCTGCTGGGAATGAATATCAGTTCCAATTTCGTCCAAATTATTTCGG AACTACACTGTTTTACTGCGGCTTGGTTTGGGATGGACCAGTACACACGC TTGATGCTTATGTTTATCAAAGAGACAATGACTTGTGCATCAAAGATTGT TACTGGTTAATATATGAAACTCAAGCATGTCTCCGTTATGACAATTCAAC TTCTCTAAGATGCCATAAATGGACGTAA
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Coding sequence (CDS) from alignment at Chr_LG02-CM007362.1:3422393..3422770+

>rna-TanjilR_02502_La_Tanjil_v1.0 ID=rna-TanjilR_02502_La_Tanjil_v1.0; Name=rna-TanjilR_02502; organism=Lupinus angustifolius; type=CDS; length=378bp; location=Sequence derived from: Chr_LG02-CM007362.1:3422393..3422770+ (Lupinus angustifolius
ATGTTCCTGCTAGTCTTACTTATAGGTTTGAGTGAGGGAAGAGTATTCTT
CTGGCCTATAGCGCATGTTCACATAAAGAATGAACTGCTAAATGGTATAA
ATCTTGAACTTCAATGTAAATCCAAAGATGATGACCTTGGAATTCATATT
GTTCCTGCTGGGAATGAATATCAGTTCCAATTTCGTCCAAATTATTTCGG
AACTACACTGTTTTACTGCGGCTTGGTTTGGGATGGACCAGTACACACGC
TTGATGCTTATGTTTATCAAAGAGACAATGACTTGTGCATCAAAGATTGT
TACTGGTTAATATATGAAACTCAAGCATGTCTCCGTTATGACAATTCAAC
TTCTCTAAGATGCCATAAATGGACGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR010264Self-incomp_S1