rna-TanjilR_02502
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_02502 vs. DB:Swiss
Match: SPH5_ARATH (S-protein homolog 5 OS=Arabidopsis thaliana OX=3702 GN=SPH5 PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 8.248e-21 Identity = 42/94 (44.68%), Postives = 53/94 (56.38%), Query Frame = 1 Query: 49 FWPIAHVHIKNELLNGINLELQCKSKDDDLGIHIVPAGNEYQFQFRPNYFGTTLFYCGLVWDGPVHTLDAYVYQRDNDLCIKDCYWLIYETQAC 330 FW V + N L+ G L + CKSK DDLGIH+VP EY F+F+PN + +TLF+C WD + D Y QRD +C DC W I C Sbjct: 25 FWRATVVTMTN-LIGGPPLTIHCKSKQDDLGIHVVPFKQEYHFKFQPNLWKSTLFFCSFQWDSQFKSFDIYDAQRDQGIC-DDCQWEIKPDGPC 116
BLAST of rna-TanjilR_02502 vs. DB:Swiss
Match: SPH29_ARATH (S-protein homolog 29 OS=Arabidopsis thaliana OX=3702 GN=SPH29 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.536e-16 Identity = 38/103 (36.89%), Postives = 54/103 (52.43%), Query Frame = 1 Query: 67 VHIKNELLNGINLELQCKSKDDDLGIHIVPAGNEYQFQFRPNYFGTTLFYCGLVWDGPVHTLDAYVYQRDNDLCIKDCYWLIYETQACLRYD-NSTSLRCHKW 372 V + N + L + C+SKDDDLG H++ G + ++FRP++F TTLF C +W+ V D Y RD C C W I AC+ + N RC+ W Sbjct: 33 VTVTNNISPQTTLTISCRSKDDDLGEHLLLHGQAFLWKFRPSWFRTTLFTCKFLWNNNVKWFDTYRSDRDQGHCY-SCNWSINADSACISGNFNKKFDRCYPW 134
BLAST of rna-TanjilR_02502 vs. DB:Swiss
Match: S1_PAPRH (Self-incompatibility protein S1 OS=Papaver rhoeas OX=33128 GN=S1 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 4.876e-16 Identity = 39/106 (36.79%), Postives = 56/106 (52.83%), Query Frame = 1 Query: 7 LLVLLIGLSEGRVFFWPIAHVHIKNELLNGINLELQCKSKDDDLGIHIVPAGNEYQFQFRPNYFGTTLFYCGLVWDGPVH-TLDAYVYQRDND-LCIKDCYWLIYE 318 LL + S G F+P+ V I N NG ++ + C+SKD+DL V +G++ F FR ++F TT FYC L WD +Y +RD+D C C W I + Sbjct: 9 LLSFFLSKSSG---FFPVIEVRIMNRRGNGRSIGIHCRSKDNDLQNQTVTSGHDMSFSFREDFFHTTHFYCDLQWDKETKFGFYSYQAKRDDDGRCSSQCLWKIMD 111
BLAST of rna-TanjilR_02502 vs. DB:Swiss
Match: SPH3_ARATH (S-protein homolog 3 OS=Arabidopsis thaliana OX=3702 GN=SPH3 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.576e-15 Identity = 43/129 (33.33%), Postives = 63/129 (48.84%), Query Frame = 1 Query: 10 LVLLIGLSEGRVFF---WPIAH-VHIKNELLNGINLELQCKSKDDDLGIHIVPAGNEYQFQFRPNYFGTTLFYCGLVWDGPVHTLDAYVYQRD---NDLCIKDCYWLIYETQACLRYDNSTSLR-CHKW 372 L++ I S+ + F W + V I N L +G+ L L CKS DDDLG+ I+ + F+FR + GTTLFYC W G D Y RD + + +C W I C+ ++ + C+ W Sbjct: 16 LLIKIAFSQVKTDFDVNWSTSKMVRITNRLGDGLTLNLHCKSADDDLGLKILAPNGSWSFKFRTSIVGTTLFYCHFTWPGQSKRFDIYDDDRDGVRSHISCINCIWDISIQGPCMFSESDHAFNICYDW 144
BLAST of rna-TanjilR_02502 vs. DB:Swiss
Match: SPH2_ARATH (S-protein homolog 2 OS=Arabidopsis thaliana OX=3702 GN=SPH2 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.746e-14 Identity = 41/119 (34.45%), Postives = 53/119 (44.54%), Query Frame = 1 Query: 31 SEGRVFFWPIAHVHIKNELLNGINLELQCKSKDDDLGIHIVPAGNEYQFQFRPNYFGTTLFYCGLVWDGPVHTLDAYVYQRD---NDLCIKD-CYWLIYETQACLRYDNSTSLR-CHKW 372 S VF V I N+L N + L CKSKDDDLG + G + F F +FG TL++C W H+ D Y RD ++ C D C W I C D + C+ W Sbjct: 38 STNSVFPTSKRTVEINNDLGNQLTLLYHCKSKDDDLGNRTLQPGESWSFSFGRQFFGRTLYFCSFSWPNESHSFDIYKDHRDSGGDNKCESDRCVWKIRRNGPCRFNDETKQFDLCYPW 156
BLAST of rna-TanjilR_02502 vs. DB:Swiss
Match: SPH20_ARATH (S-protein homolog 20 OS=Arabidopsis thaliana OX=3702 GN=SPH20 PE=2 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 1.634e-11 Identity = 35/110 (31.82%), Postives = 53/110 (48.18%), Query Frame = 1 Query: 4 FLLVLLIGLSEGRVFFWPIAHVHIKNELLNGINLELQCKSKDDDLGIHIVPAGNEYQFQFRPNYFGTTLFYCGLVWDGPVHTLDAYVYQRDNDLCIK-DCYWLIYETQAC 330 F++ L GL E V + +V I N++ + L L CKSKD DLG + + F+ +++G TLF+C W+ D V RD + C + C W I + C Sbjct: 15 FMVFLFGGLCEAGV----VVNVDIINDIGPNVQLGLHCKSKDKDLGPQSLAPQQHWGFRKTLDFWGVTLFFCHFEWENQSKWFDILVAGRDRNTCAEHPCVWSIRPSGPC 120
BLAST of rna-TanjilR_02502 vs. DB:Swiss
Match: SPH4_ARATH (S-protein homolog 4 OS=Arabidopsis thaliana OX=3702 GN=SPH4 PE=3 SV=1) HSP 1 Score: 59.6918 bits (143), Expect = 4.103e-11 Identity = 32/85 (37.65%), Postives = 44/85 (51.76%), Query Frame = 1 Query: 67 VHIKNELLNGINLELQCKSKDDDLGIHIVPAGNEYQFQFRPNYF-GTTLFYCGLVWDGPVHTLDAYVYQRDNDLCIKDCYWLIYE 318 V I N L +G L+L CKS DDDLG+ I+ + F+FRP+ G TLF+C W G + Y RD C + I++ Sbjct: 40 VTITNRLGDGSTLKLHCKSADDDLGLKILAPNGSWSFKFRPSIVPGVTLFFCHFTWPGQSKWFNIYDDDRDGVRMGIPCIYCIWD 124
BLAST of rna-TanjilR_02502 vs. DB:Swiss
Match: SPH18_ARATH (S-protein homolog 18 OS=Arabidopsis thaliana OX=3702 GN=SPH18 PE=3 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 1.137e-9 Identity = 38/126 (30.16%), Postives = 53/126 (42.06%), Query Frame = 1 Query: 1 MFLLVLLIGLSEGRVFFWPIAHVHIKNELLNGI----NLELQCKSKDDDLGIHIVPAGNEYQFQFRPNYFGTTLFYCGLVWDGPVHTLDAYVYQRDNDLC-IKDCYWLIYETQACLRYDNSTSLRC 363 + + L +GL E AH HI +++N I L L CKSK DLG + + F N + TTLF+C VW+ D +RD +C C W I + C D+ C Sbjct: 13 ILIAFLFVGLCE--------AHRHINVDIINDIGPNVQLGLHCKSKGKDLGPQSLAPHQHWGFTASLNVWETTLFFCHFVWENQSRWFDILKEKRDTIVCKYHPCVWSIRPSGPCRLTDHEKCYPC 130
BLAST of rna-TanjilR_02502 vs. DB:Swiss
Match: SPH6_ARATH (S-protein homolog 6 OS=Arabidopsis thaliana OX=3702 GN=SPH6 PE=3 SV=2) HSP 1 Score: 52.7582 bits (125), Expect = 1.677e-8 Identity = 38/111 (34.23%), Postives = 56/111 (50.45%), Query Frame = 1 Query: 7 LLVLLIGLS----EGRVF--FWPIAHVHIKNELLNGINLELQCKSKDDDLGIHIVPAGNEYQFQFRPNYFGTTLFYCGLVWDG-PVHTLDAYVYQRDNDLCIKDCYWLIYE 318 +L+ LIG +G+VF P+ V I N+ N L + CKS+DDD G HI+ G Y + F N+ +TL++CG + D Y RD+ C ++C W E Sbjct: 8 VLISLIGCETLQHDGKVFPMKGPLTRVVIYND--NDYLLGVHCKSRDDDHGFHILQKGGLYGWMFYVNFMNSTLYFCGFSQEQVKKGVFDIYKAVRDSSRC-RNCTWEAKE 115
BLAST of rna-TanjilR_02502 vs. DB:Swiss
Match: SPH19_ARATH (S-protein homolog 19 OS=Arabidopsis thaliana OX=3702 GN=SPH19 PE=3 SV=1) HSP 1 Score: 51.2174 bits (121), Expect = 5.526e-8 Identity = 31/109 (28.44%), Postives = 49/109 (44.95%), Query Frame = 1 Query: 4 FLLVLLIGLSEGRVFFWPIAHVHIKNELLNGINLELQCKSKDDDLGIHIVPAGNEYQFQFRPNYFGTTLFYCGLVWDGPVHTLDAYVYQRDNDLCIKDCYWLIYETQAC 330 F++ GL E R +V + N++ + L L CKSK+ DLG + + + F+ ++ TLF+C W+ D +V RD C C W I + C Sbjct: 15 FMVFFFGGLCEARG-----VNVDLINDIGPNVQLGLHCKSKNKDLGSQSLVSDQHWGFRASLGFWTVTLFFCHFEWENQSKWFDIFVEDRDL-TCGDHCVWSIRPSGPC 117 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_02502 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_02502_La_Tanjil_v1.0 ID=rna-TanjilR_02502_La_Tanjil_v1.0; Name=rna-TanjilR_02502; organism=Lupinus angustifolius; type=mRNA; length=378bpback to top protein sequence of rna-TanjilR_02502_La_Tanjil_v1.0 >rna-TanjilR_02502_La_Tanjil_v1.0 ID=rna-TanjilR_02502_La_Tanjil_v1.0; Name=rna-TanjilR_02502_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=125bpback to top mRNA from alignment at Chr_LG02-CM007362.1:3422393..3422770+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_02502_La_Tanjil_v1.0 ID=rna-TanjilR_02502_La_Tanjil_v1.0; Name=rna-TanjilR_02502; organism=Lupinus angustifolius; type=mRNA; length=378bp; location=Sequence derived from: Chr_LG02-CM007362.1:3422393..3422770+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG02-CM007362.1:3422393..3422770+ >rna-TanjilR_02502_La_Tanjil_v1.0 ID=rna-TanjilR_02502_La_Tanjil_v1.0; Name=rna-TanjilR_02502; organism=Lupinus angustifolius; type=CDS; length=378bp; location=Sequence derived from: Chr_LG02-CM007362.1:3422393..3422770+ (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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