rna-TanjilR_08172
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_08172 vs. DB:Swiss
Match: WAT1_ARATH (Protein WALLS ARE THIN 1 OS=Arabidopsis thaliana OX=3702 GN=WAT1 PE=1 SV=1) HSP 1 Score: 198.364 bits (503), Expect = 1.721e-54 Identity = 101/149 (67.79%), Postives = 119/149 (79.87%), Query Frame = 1
Query: 1090 FRIEQVRLNRKDGVAKVTGTILCVAGATVITLYKGPTIYXXXXXXXXXXXXXXXXXXXXFDFGSLSLGDAKGKNWTLGCLYLIGHCLSWSAWLVLQAPVLKKYPARLSVTSYTCFFGLLQFLLIALVLERDAQAWVFHSGGEAFTILYA 1536
RIE+VR+NR+DG++K+ GT LCVAGA+VITLYKGPTIY+P LH+ ++TT + LG+A KNWTLGC+YLIGHCLSWS WLV QAPVLK YPARLSVTSYTCFFG++QFL+IA ERD+QAWVFHSG E FTILYA
Sbjct: 131 LRIEKVRINRRDGISKILGTALCVAGASVITLYKGPTIYTPASHLHAHLLTTNSAVLA-------PLGNAAPKNWTLGCIYLIGHCLSWSGWLVFQAPVLKSYPARLSVTSYTCFFGIIQFLIIAAFCERDSQAWVFHSGWELFTILYA 272 HSP 2 Score: 103.605 bits (257), Expect = 4.144e-22 Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 2
Query: 2516 FVMYMQGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTFVVAIMASLALGEEFYLGGLV 2692
F + G+VASGIAFAVQIWCIDRGGPVFVAVYQPVQT VVAIMAS+ALGEEFYLGG++
Sbjct: 267 FTILYAGIVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMASIALGEEFYLGGII 325 HSP 3 Score: 87.8113 bits (216), Expect = 5.599e-17 Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = 1
Query: 1 MLLLQFGYAGFHVVSRAALNMGVSKLVFPVYRNIIAXXXXXPFAYFLEK 147
ML LQFGYAGFHVVSRAALNMG+SKLVFPVYRNIIALLLLLPFAYFLEK
Sbjct: 24 MLTLQFGYAGFHVVSRAALNMGISKLVFPVYRNIIALLLLLPFAYFLEK 72 HSP 4 Score: 74.3294 bits (181), Expect = 1.374e-12 Identity = 36/44 (81.82%), Postives = 41/44 (93.18%), Query Frame = 3
Query: 549 VALNRITANQGFYLLGLENTSPTFASAIQNSVPAITFLMAVILR 680
+AL ITANQGFYLLGL+NTSPTFAS++QNSVPAITFLMA +LR
Sbjct: 89 LALIGITANQGFYLLGLDNTSPTFASSMQNSVPAITFLMAALLR 132 HSP 5 Score: 62.7734 bits (151), Expect = 6.884e-9 Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = 1
Query: 2896 IIGAVLIVAGLYLVLWGKNEEKKFIK-EQLAISLNVEHSIIR-PTSH--AKASLTQPLLPSSTENV 3081
IIGAVLI+AGLY VL+GK+EE+KF E+ AI + EH I R P S K+S+T PLL ST+NV
Sbjct: 324 IIGAVLIIAGLYFVLYGKSEERKFAALEKAAIQSSAEHGIERAPVSRNSIKSSITTPLLHQSTDNV 389
BLAST of rna-TanjilR_08172 vs. DB:Swiss
Match: 5NG4_PINTA (Auxin-induced protein 5NG4 OS=Pinus taeda OX=3352 PE=2 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 6.184e-45 Identity = 84/149 (56.38%), Postives = 110/149 (73.83%), Query Frame = 1
Query: 1090 FRIEQVRLNRKDGVAKVTGTILCVAGATVITLYKGPTIYXXXXXXXXXXXXXXXXXXXXFDFGSLSLGDAKGKNWTLGCLYLIGHCLSWSAWLVLQAPVLKKYPARLSVTSYTCFFGLLQFLLIALVLERDAQAWVFHSGGEAFTILYA 1536
R+E+V ++R+DG+AK+ GT+ CV+GAT+ITLYKGP I + + T + + F LS AK +NWTLGC+YL+G+CL+WS W+VLQAPVLK+YPARLSVTS+TCFFG++QFL+IA E D + W HSGGE FTILYA
Sbjct: 130 LRLEKVHISRRDGLAKIIGTVACVSGATIITLYKGPPI----THIWRPNLEVTASYFKAFQGNDLS---AKSENWTLGCIYLLGNCLAWSGWIVLQAPVLKRYPARLSVTSFTCFFGVIQFLIIAAFFETDLEHWKIHSGGELFTILYA 271 HSP 2 Score: 94.3597 bits (233), Expect = 5.974e-19 Identity = 45/58 (77.59%), Postives = 50/58 (86.21%), Query Frame = 2
Query: 2516 FVMYMQGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTFVVAIMASLALGEEFYLGGL 2689
F + G VASGIAF+VQIWCIDRGGPVFVAVYQPVQT VAIMAS+ LGE+FYLGG+
Sbjct: 266 FTILYAGFVASGIAFSVQIWCIDRGGPVFVAVYQPVQTIAVAIMASIILGEQFYLGGI 323 HSP 3 Score: 82.0333 bits (201), Expect = 5.050e-15 Identity = 41/49 (83.67%), Postives = 46/49 (93.88%), Query Frame = 1
Query: 1 MLLLQFGYAGFHVVSRAALNMGVSKLVFPVYRNIIAXXXXXPFAYFLEK 147
ML LQFGYAGFH+VSRAALNMGVSK+VFPVYRNI+AL+L+ P AYFLEK
Sbjct: 23 MLALQFGYAGFHIVSRAALNMGVSKVVFPVYRNILALMLIGPCAYFLEK 71
BLAST of rna-TanjilR_08172 vs. DB:Swiss
Match: WTR26_ARATH (WAT1-related protein At3g53210 OS=Arabidopsis thaliana OX=3702 GN=At3g53210 PE=2 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 2.085e-37 Identity = 80/172 (46.51%), Postives = 104/172 (60.47%), Query Frame = 1
Query: 1021 NNQPYMIVFTNKVYYLVNYWLYNF-RIEQVRLNRKDGVAKVTGTILCVAGATVITLYKGPTIYXXXXXXXXXXXXXXXXXXXXFDFGSLSLGDAKGKNWTLGCLYLIGHCLSWSAWLVLQAPVLKKYPARLSVTSYTCFFGLLQFLLIALVLERDAQAWVFHSGGEAFTILY 1533
N P T V V++ + IE+V RKDG+AKV GTI+ VAG+ VITLYKGPTIY P+ + + I + + KNWTLGCL L+GHCL WS+W+VLQ+P+LKKYPAR S SY+CFF ++QF I+ ERD + W SGGE + +LY
Sbjct: 97 NTSPTFASATENVVPAVSFLMAALLGIEKVEWKRKDGIAKVVGTIVSVAGSLVITLYKGPTIYQPSLNIVNQTIKPEE-------------AEEENKNWTLGCLCLMGHCLCWSSWIVLQSPLLKKYPARFSFVSYSCFFAVIQFFGISAYFERDLERWKIISGGELYALLY 255 HSP 2 Score: 71.633 bits (174), Expect = 8.620e-12 Identity = 30/59 (50.85%), Postives = 46/59 (77.97%), Query Frame = 2
Query: 2516 FVMYMQGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTFVVAIMASLALGEEFYLGGLV 2692
+ + G+V S + FA+QI+ ++RGGP+FV+ Y P+QT + A++A+LALGE FYLGGL+
Sbjct: 251 YALLYTGLVGSAMVFAIQIYVVERGGPLFVSAYLPLQTLIAAVLATLALGEHFYLGGLI 309 HSP 3 Score: 65.4698 bits (158), Expect = 9.491e-10 Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 1
Query: 1 MLLLQFGYAGFHVVSRAALNMGVSKLVFPVYRNIIAXXXXXPFAYFLEK 147
M++ Q GYAG HV+ R ALN+GVSKLVFP+YR I+A +L P AYFLEK
Sbjct: 14 MVVFQTGYAGNHVIMRYALNLGVSKLVFPLYRTIVAFSVLAPSAYFLEK 62 HSP 4 Score: 60.4622 bits (145), Expect = 3.697e-8 Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 3
Query: 564 ITANQGFYLLGLENTSPTFASAIQNSVPAITFLMAVIL 677
IT NQGFY+ GL+NTSPTFASA +N VPA++FLMA +L
Sbjct: 84 ITLNQGFYIFGLDNTSPTFASATENVVPAVSFLMAALL 121
BLAST of rna-TanjilR_08172 vs. DB:Swiss
Match: WTR17_ARATH (WAT1-related protein At3g18200 OS=Arabidopsis thaliana OX=3702 GN=At3g18200 PE=2 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 2.065e-34 Identity = 73/149 (48.99%), Postives = 96/149 (64.43%), Query Frame = 1
Query: 1090 FRIEQVRLNRKDGVAKVTGTILCVAGATVITLYKGPTIYXXXXXXXXXXXXXXXXXXXXFDFGSLSLGDAKGKNWTLGCLYLIGHCLSWSAWLVLQAPVLKKYPARLSVTSYTCFFGLLQFLLIALVLERDAQAWVFHSGGEAFTILYA 1536
R+E + L RK GVAKV GT++ + GATVITLY+G I+ + + +G + TLG LYL+GHCLSW+ W+VLQAPVLK+YPA+L++TS+TCFFGL+QFL+IAL +E D W+ S E FTILYA
Sbjct: 146 LRLEHIDLVRKHGVAKVLGTLVSIGGATVITLYRGFPIFDQGLNMQKEEV----------------VGSDNSHSLTLGWLYLMGHCLSWAGWMVLQAPVLKQYPAKLTLTSFTCFFGLIQFLVIALFVETDLNNWIIVSWEELFTILYA 278 HSP 2 Score: 70.4774 bits (171), Expect = 2.541e-11 Identity = 34/49 (69.39%), Postives = 44/49 (89.80%), Query Frame = 1
Query: 1 MLLLQFGYAGFHVVSRAALNMGVSKLVFPVYRNIIAXXXXXPFAYFLEK 147
++ LQF +AGFH+VSR ALN+GVSK+V+PVYRN++ALLL+ PFAYF EK
Sbjct: 39 LITLQFCFAGFHIVSRVALNIGVSKVVYPVYRNLLALLLIGPFAYFFEK 87 HSP 3 Score: 68.5514 bits (166), Expect = 1.046e-10 Identity = 35/52 (67.31%), Postives = 41/52 (78.85%), Query Frame = 3
Query: 549 VALNRITANQGFYLLGLENTSPTFASAIQNSVPAITFLMAVILRQDLN*LIR 704
+AL ITANQGFYLLGL +PTFASA+QNSVPAITF+MA LR + L+R
Sbjct: 104 LALIGITANQGFYLLGLYYATPTFASAMQNSVPAITFIMACALRLEHIDLVR 155 HSP 4 Score: 67.3958 bits (163), Expect = 2.456e-10 Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 2
Query: 2516 FVMYMQGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTFVVAIMASLALGEEFYLGGLV 2692
F + G++ASG+ +Q WCI + GPVFVAV+QP+QT +VA MA L LG++ Y GG+V
Sbjct: 273 FTILYAGIIASGLVVYLQTWCIYKSGPVFVAVFQPLQTLLVAAMAFLILGDQLYSGGIV 331
BLAST of rna-TanjilR_08172 vs. DB:Swiss
Match: WTR37_ARATH (WAT1-related protein At4g30420 OS=Arabidopsis thaliana OX=3702 GN=At4g30420 PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 5.941e-22 Identity = 56/147 (38.10%), Postives = 77/147 (52.38%), Query Frame = 1
Query: 1099 EQVRLNRKDGVAKVTGTILCVAGATVITLYKGPTIYXXXXXXXXXXXXXXXXXXXXFDFGSLSLGDAKGKN-WTLGCLYLIGHCLSWSAWLVLQAPVLKKYPARLSVTSYTCFFGLLQFLLIALVLERDAQAWVFHSGGEAFTILYA 1536
E++ L G+AK+ GTILCVAGA +TL +GP I + LG K +N W +GCL+L L WS WL+LQ P+ YP LS++++ C FG +Q ++ LE+D AW+ HS E T LYA
Sbjct: 116 EKLNLRDIRGLAKIAGTILCVAGAISMTLLRGPKI---------------LNSESALPIAKSVLGHLKDQNTWLIGCLFLFSSTLCWSFWLILQVPISAYYPDNLSLSAWMCLFGTIQCAVVTFFLEKDPNAWILHSYSEFATCLYA 247
BLAST of rna-TanjilR_08172 vs. DB:Swiss
Match: WTR8_ARATH (WAT1-related protein At1g44800 OS=Arabidopsis thaliana OX=3702 GN=At1g44800 PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.182e-16 Identity = 51/154 (33.12%), Postives = 76/154 (49.35%), Query Frame = 1
Query: 1033 YMIVFTNKVYYLVNYWLYNFRIEQVRLNRKDGVAKVTGTILCVAGATVITLYKGPTIYXXXXXXXXXXXXXXXXXXXXFDFGSLSLGDAKGKNWTLGCLYLIGHCLSWSAWLVLQAPVLKKYPARLSVTSYTCFFGLLQFLLIALVLERDAQAW 1494
Y FTN + + FR+E V + VAKV GT++ V GA ++TLYKGP I F GS S G++W LG + ++G +W+A+ +LQ+ LK YPA LS+ + C G + + +L++ RD AW
Sbjct: 103 YTSAFTNALPAVTFILALIFRLETVNFRKVHSVAKVVGTVITVGGAMIMTLYKGPAI------------EIVKAAHNSFHGGSSS--TPTGQHWVLGTIAIMGSISTWAAFFILQSYTLKVYPAELSLVTLICGIGTILNAIASLIMVRDPSAW 242
BLAST of rna-TanjilR_08172 vs. DB:Swiss
Match: WTR43_ARATH (WAT1-related protein At5g45370 OS=Arabidopsis thaliana OX=3702 GN=At5g45370 PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 6.398e-16 Identity = 57/182 (31.32%), Postives = 93/182 (51.10%), Query Frame = 1
Query: 994 AFFNCCYYTNNQPYMIVFTNKVYYLVNYWLYNFRIEQVRLNRKDGVAKVTGTILCVAGATVITLYKGPTIYXXXXXXXXXXXXXXXXXXXXFDFGSLSLGDAKG-KNWTLGCLYLIGHCLSWSAWLVLQAPVLKKYPARLSVTSYTCFFGLLQFLLIALVLERDAQAWVFHSGGEAFTILYA 1536
++ N Y QP + VFT + L+ E+V L + +G KV GT++CV+GA + L++GP ++ S + + +S G W +G L LIG+C+ +A+L +QAPVLKKYPA LSV +Y+ FFG + A++ R+ + W + E +++A
Sbjct: 106 SYTNPTYAAAIQPSIPVFTFLLAVLMG-------TEKVNLLKVEGQTKVGGTLVCVSGAIAMALFRGPALFGGKDAADSVKSVIIDRSQPELNGWLVSSFLGLGFDQWHIGVLCLIGNCMCMAAFLAVQAPVLKKYPAYLSVAAYSYFFGASIMITTAILFVREPKDWSL-TQSEVLAVIFA 279
BLAST of rna-TanjilR_08172 vs. DB:Swiss
Match: WTR25_ARATH (WAT1-related protein At3g45870 OS=Arabidopsis thaliana OX=3702 GN=At3g45870 PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 7.151e-16 Identity = 59/178 (33.15%), Postives = 91/178 (51.12%), Query Frame = 1
Query: 1003 NCCYYTNNQPYMIVFTNKVYYLVNYWLYNFRIEQVRLNRKDGVAKVTGTILCVAGATVITLYKGPTIYXXXXXXXXXXXXXXXXXXXXFDFGSLSLGDAKGKNWTLGCLYLIGHCLSWSAWLVLQAPVLKKYPARLSVTSYTCFFGLLQFLLIALVLERDAQAWVFHSGGEAFTILYA 1536
N Y QP + VFT + ++ E++ L + +G AKV GT++CVAGA ++ L++G ++ T + T G + W LG L LIG+C +A+L +QAPVLKKYPA LSVT+Y+ FFG + + A + ++ W + E F ++YA
Sbjct: 101 NPTYAAAIQPSIPVFTFILALIMG-------TERLNLFKLEGQAKVGGTLICVAGAVLMVLFRGLALFGETEAESLGHGESRHTETSGHFMSGFFNGLGR---WNLGVLCLIGNCTCMAAFLAIQAPVLKKYPANLSVTAYSYFFGTMFMVTSAFFMTNESTNWSL-TRSEFFAVVYA 267
BLAST of rna-TanjilR_08172 vs. DB:Swiss
Match: WTR32_ARATH (WAT1-related protein At4g08300 OS=Arabidopsis thaliana OX=3702 GN=At4g08300 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.147e-15 Identity = 48/135 (35.56%), Postives = 71/135 (52.59%), Query Frame = 1
Query: 1090 FRIEQVRLNRKDGVAKVTGTILCVAGATVITLYKGPTIYXXXXXXXXXXXXXXXXXXXXFDFGSLSLGDAKGKNWTLGCLYLIGHCLSWSAWLVLQAPVLKKYPARLSVTSYTCFFGLLQFLLIALVLERDAQAW 1494
FRIE V L + +AKV GT + V GA V+TLYKGP I S ++ T+ + D +NW G L ++G +W+ + +LQ+ LKKYPA LS+ + C G + + +L++ RD AW
Sbjct: 122 FRIETVNLKKTRSLAKVIGTAITVGGAMVMTLYKGPAIELFKTAHSSLHGGSSGTSSETTD-----------QNWVTGTLAVMGSITTWAGFFILQSFTLKKYPAELSLVMWICAMGTVLNTIASLIMVRDVSAW 245
BLAST of rna-TanjilR_08172 vs. DB:Swiss
Match: WTR5_ARATH (WAT1-related protein At1g21890 OS=Arabidopsis thaliana OX=3702 GN=At1g21890 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 2.195e-14 Identity = 45/135 (33.33%), Postives = 68/135 (50.37%), Query Frame = 1
Query: 1090 FRIEQVRLNRKDGVAKVTGTILCVAGATVITLYKGPTIYXXXXXXXXXXXXXXXXXXXXFDFGSLSLGDAKGKNWTLGCLYLIGHCLSWSAWLVLQAPVLKKYPARLSVTSYTCFFGLLQFLLIALVLERDAQAW 1494
FR+E V + +AKV GT++ V+GA ++TLYKGP + + + A K+W G L L+G W+ + +LQ+ LK+YPA LS+T+ C G L+ ++LV RD AW
Sbjct: 122 FRLESVNFKKVRSIAKVVGTVITVSGALLMTLYKGPIVDFIRFGGGGGGGSDGAGGSH-----GGAGAAAMDKHWIPGTLMLLGRTFGWAGFFILQSFTLKQYPAELSLTTLICLMGTLEGTAVSLVTVRDLSAW 251 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_08172 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_08172_La_Tanjil_v1.0 ID=rna-TanjilR_08172_La_Tanjil_v1.0; Name=rna-TanjilR_08172; organism=Lupinus angustifolius; type=mRNA; length=3084bpback to top protein sequence of rna-TanjilR_08172_La_Tanjil_v1.0 >rna-TanjilR_08172_La_Tanjil_v1.0 ID=rna-TanjilR_08172_La_Tanjil_v1.0; Name=rna-TanjilR_08172_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=369bpback to top mRNA from alignment at Chr_LG03-CM007363.1:4173728..4176811+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_08172_La_Tanjil_v1.0 ID=rna-TanjilR_08172_La_Tanjil_v1.0; Name=rna-TanjilR_08172; organism=Lupinus angustifolius; type=mRNA; length=3084bp; location=Sequence derived from: Chr_LG03-CM007363.1:4173728..4176811+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG03-CM007363.1:4173728..4176811+ >rna-TanjilR_08172_La_Tanjil_v1.0 ID=rna-TanjilR_08172_La_Tanjil_v1.0; Name=rna-TanjilR_08172; organism=Lupinus angustifolius; type=CDS; length=1110bp; location=Sequence derived from: Chr_LG03-CM007363.1:4173728..4176811+ (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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