Transcript Overview
Name rna-TanjilR_13973 Unique Name rna-TanjilR_13973_La_Tanjil_v1.0 Type mRNA Organism Lupinus angustifolius (blue lupin) Sequence length 1553 Product hypothetical protein
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
rna-TanjilR_13973 rna-TanjilR_13973_La_Tanjil_v1.0-protein Lupinus angustifolius polypeptide rna-TanjilR_13973_La_Tanjil_v1.0 rna-TanjilR_13973_La_Tanjil_v1.0 Lupinus angustifolius polypeptide
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
rna-TanjilR_13973_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:22714886..22715251 rna-TanjilR_13973_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:22714886..22715251 Lupinus angustifolius CDS rna-TanjilR_13973_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:22713699..22713863 rna-TanjilR_13973_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:22713699..22713863 Lupinus angustifolius CDS
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
rna-TanjilR_13973_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:22714886..22715251 rna-TanjilR_13973_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:22714886..22715251 Lupinus angustifolius exon rna-TanjilR_13973_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:22713699..22713863 rna-TanjilR_13973_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:22713699..22713863 Lupinus angustifolius exon
Homology
BLAST of rna-TanjilR_13973 vs. DB:Swiss
Match:
CID5_ARATH (Polyadenylate-binding protein-interacting protein 5 OS=Arabidopsis thaliana OX=3702 GN=CID5 PE=2 SV=1)
HSP 1 Score: 65.0846 bits (157), Expect = 3.411e-11
Identity = 44/121 (36.36%), Postives = 64/121 (52.89%), Query Frame = 1
Query: 7 SLNPYAASYVPLQKNEPSGVTFGTEKGSKNHDGRNLFYSSTSASNNMPGDFQPASNSYGSSSQNAAPLTDDLFTDEDHLDLDIEFLKMSFPDISEQSLRDVYVLNEDDLDAAIDMLNQLEV 369
+LNP+AASYVP+ K V +G DG S + +MP SS + DD E +D+DIE+L ++F +S++S+ DVY+ N DL+A I+MLNQLE+
Sbjct: 7 ALNPHAASYVPISKR----VDYG-----GGDDGLVFAAKSPTVEVSMPKK---------SSEMAYKQIRDDDLDLEMDIDMDIEYLLVTFSGLSQESITDVYLANGGDLEATIEMLNQLEI 109
BLAST of rna-TanjilR_13973 vs. DB:Swiss
Match:
CID6_ARATH (Polyadenylate-binding protein-interacting protein 6 OS=Arabidopsis thaliana OX=3702 GN=CID6 PE=2 SV=1)
HSP 1 Score: 65.4698 bits (158), Expect = 3.898e-11
Identity = 45/123 (36.59%), Postives = 63/123 (51.22%), Query Frame = 1
Query: 4 SSLNPYAASYVPLQKNEPSGVTFGTEKGSKNHDGRNLFYSSTSASNNMPGDFQPASNSYGSSSQNAAPLTDDLFTDED-HLDLDIEFLKMSFPDISEQSLRDVYVLNEDDLDAAIDMLNQLEV 369
S+LNPYAA+YVPL K E S V + G +Q S S + + DED +D+DIE+L ++P +S++S+ DVY+ N DLDA I+MLNQLE+
Sbjct: 6 STLNPYAAAYVPLSKREGSLVDTKPVTQQHMQQQHHQQQPYYGYGVQGMGSYQGTQMSPKKSPSEM--VYNHQLKDEDLEMDMDIEYLLATYPGLSQESINDVYLANTCDLDATIEMLNQLEI 126
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
200 400 600 800 1000 1200 1400 Score = Score = Score = Score = Score = Score = 11.367 Sequence mobidb-lite mobidb-lite mobidb-lite mobidb-lite mobidb-lite PS51140
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 126..176 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 35..71 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..72 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 147..176 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..27 IPR003892 Ubiquitin system component CUE PROSITE PS51140 CUE coord: 80..123
Sequences
The
following sequences are available for this feature:
mRNA sequence
>rna-TanjilR_13973_La_Tanjil_v1.0 ID=rna-TanjilR_13973_La_Tanjil_v1.0; Name=rna-TanjilR_13973; organism=Lupinus angustifolius; type=mRNA; length=1553bp back to top protein sequence of rna-TanjilR_13973_La_Tanjil_v1.0
>rna-TanjilR_13973_La_Tanjil_v1.0 ID=rna-TanjilR_13973_La_Tanjil_v1.0; Name=rna-TanjilR_13973_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=176bp back to top mRNA from alignment at Chr_LG03-CM007363.1:22713699..22715251-
Legend: polypeptide CDS exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_13973_La_Tanjil_v1.0 ID=rna-TanjilR_13973_La_Tanjil_v1.0; Name=rna-TanjilR_13973; organism=Lupinus angustifolius; type=mRNA; length=1553bp; location=Sequence derived from: Chr_LG03-CM007363.1:22713699..22715251- (Lupinus angustifoliusATGTCTTCTTTGAATCCATATGCAGCTTCATATGTGCCACTACAGAAAAA
TGAACCATCTGGTGTAACTTTTGGAACAGAAAAAGGTTCCAAGAATCATG
ATGGGAGGAACCTTTTTTATTCTAGCACTTCTGCTTCCAATAATATGCCT
GGTGATTTTCAACCTGCATCCAATTCTTACGGTTCGTCGTCGCAGAATGC
GGCACCGTTGACAGATGACCTTTTTACAGATGAAGATCACCTTGACTTGG
ATATTGAATTTCTGAAAATGTCATTTCCTGATATATCTGAGCAGTCCCTT
AGAGATGTCTACGTGTTAAACGAGGATGACTTGGATGCCGCTATTGACAT
GTTGAATCAACTTGAG TTTGATGATGAT
GTTGATTCTTCTGGAAGTCTCCCAGACACACTGGATATTGGCGATGTTTC
AGAACCTGTCGTATCAGCTGATTCTGCTTCGTCGAAACAGAAGAATGTTG
CAGCTGAAGCCAGTACTTCATCTAATCCCTCGGCGTCAAGCAAGTTATCA
TGA back to top Coding sequence (CDS) from alignment at Chr_LG03-CM007363.1:22713699..22715251-
>rna-TanjilR_13973_La_Tanjil_v1.0 ID=rna-TanjilR_13973_La_Tanjil_v1.0; Name=rna-TanjilR_13973; organism=Lupinus angustifolius; type=CDS; length=531bp; location=Sequence derived from: Chr_LG03-CM007363.1:22713699..22715251- (Lupinus angustifolius back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
Term Definition
IPR003892 CUE
Vocabulary: Molecular Function
Term Definition
GO:0005515 protein binding
