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Transcript Overview
Name | rna-TanjilR_13973 |
Unique Name | rna-TanjilR_13973_La_Tanjil_v1.0 |
Type | mRNA |
Organism | Lupinus angustifolius (blue lupin) |
Sequence length | 1553 |
Product | hypothetical protein |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_13973 | rna-TanjilR_13973_La_Tanjil_v1.0-protein | Lupinus angustifolius | polypeptide |
rna-TanjilR_13973_La_Tanjil_v1.0 | rna-TanjilR_13973_La_Tanjil_v1.0 | Lupinus angustifolius | polypeptide |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_13973_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:22714886..22715251 | rna-TanjilR_13973_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:22714886..22715251 | Lupinus angustifolius | CDS |
rna-TanjilR_13973_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:22713699..22713863 | rna-TanjilR_13973_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:22713699..22713863 | Lupinus angustifolius | CDS |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_13973_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:22714886..22715251 | rna-TanjilR_13973_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:22714886..22715251 | Lupinus angustifolius | exon |
rna-TanjilR_13973_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:22713699..22713863 | rna-TanjilR_13973_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:22713699..22713863 | Lupinus angustifolius | exon |
Homology
BLAST of rna-TanjilR_13973 vs. DB:Swiss
Match: CID5_ARATH (Polyadenylate-binding protein-interacting protein 5 OS=Arabidopsis thaliana OX=3702 GN=CID5 PE=2 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 3.411e-11 Identity = 44/121 (36.36%), Postives = 64/121 (52.89%), Query Frame = 1
Query: 7 SLNPYAASYVPLQKNEPSGVTFGTEKGSKNHDGRNLFYSSTSASNNMPGDFQPASNSYGSSSQNAAPLTDDLFTDEDHLDLDIEFLKMSFPDISEQSLRDVYVLNEDDLDAAIDMLNQLEV 369
+LNP+AASYVP+ K V +G DG S + +MP SS + DD E +D+DIE+L ++F +S++S+ DVY+ N DL+A I+MLNQLE+
Sbjct: 7 ALNPHAASYVPISKR----VDYG-----GGDDGLVFAAKSPTVEVSMPKK---------SSEMAYKQIRDDDLDLEMDIDMDIEYLLVTFSGLSQESITDVYLANGGDLEATIEMLNQLEI 109
BLAST of rna-TanjilR_13973 vs. DB:Swiss
Match: CID6_ARATH (Polyadenylate-binding protein-interacting protein 6 OS=Arabidopsis thaliana OX=3702 GN=CID6 PE=2 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 3.898e-11 Identity = 45/123 (36.59%), Postives = 63/123 (51.22%), Query Frame = 1
Query: 4 SSLNPYAASYVPLQKNEPSGVTFGTEKGSKNHDGRNLFYSSTSASNNMPGDFQPASNSYGSSSQNAAPLTDDLFTDED-HLDLDIEFLKMSFPDISEQSLRDVYVLNEDDLDAAIDMLNQLEV 369
S+LNPYAA+YVPL K E S V + G +Q S S + + DED +D+DIE+L ++P +S++S+ DVY+ N DLDA I+MLNQLE+
Sbjct: 6 STLNPYAAAYVPLSKREGSLVDTKPVTQQHMQQQHHQQQPYYGYGVQGMGSYQGTQMSPKKSPSEM--VYNHQLKDEDLEMDMDIEYLLATYPGLSQESINDVYLANTCDLDATIEMLNQLEI 126
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 126..176 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 35..71 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..72 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 147..176 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..27 |
IPR003892 | Ubiquitin system component CUE | PROSITE | PS51140 | CUE | coord: 80..123 score: 11.367 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_13973_La_Tanjil_v1.0 ID=rna-TanjilR_13973_La_Tanjil_v1.0; Name=rna-TanjilR_13973; organism=Lupinus angustifolius; type=mRNA; length=1553bp ATGTCTTCTTTGAATCCATATGCAGCTTCATATGTGCCACTACAGAAAAA TGAACCATCTGGTGTAACTTTTGGAACAGAAAAAGGTTCCAAGAATCATG ATGGGAGGAACCTTTTTTATTCTAGCACTTCTGCTTCCAATAATATGCCT GGTGATTTTCAACCTGCATCCAATTCTTACGGTTCGTCGTCGCAGAATGC GGCACCGTTGACAGATGACCTTTTTACAGATGAAGATCACCTTGACTTGG ATATTGAATTTCTGAAAATGTCATTTCCTGATATATCTGAGCAGTCCCTT AGAGATGTCTACGTGTTAAACGAGGATGACTTGGATGCCGCTATTGACAT GTTGAATCAACTTGAGGTAGTGTTCTATGTTTTTAGACTTCAAATGTATT CATCAATTGATGGTAAAATGTTGAATCGATCTAGAACCGTTGTTTGGTCT ATATGTGTGTTTGAATGTTGAATCACTGAATATGGTATTGTATTGGCATG ATACTGATGGAAATTTGTGTGTTTCAACTTGAACATATTTATAAAGAAAA AATAATAACTAATTGAATAAGTGATTCCGCACCTTCCGTTTCCATGTTTC CCTTTCAATTCCCTTTATCCTTGAAGATTGACATCTTCAGATGGTGGTGC ACAGGAACAAAGGTTTTTATGCCATCTTAACGTTGTTGAACCTCACCAAG TGATTTGAGTTTACCAAAGGCAAAGCTTGAATTTTAGAATTGTGATCGAT TTCTTCTCGTATTTCTTATCTTCCTGCTTCATTTGTTATTATGGTTAATT TTTCCCATTTACTATGATTGTCTTGTTTATTCCACTTGTTTCTTTTGATT CTTCCTTTCCCCTTCTCTTCTTTTGTTTTTATTCTAGGGATTGGACTGTT AAATATTACACATCACTGGTTGGAACCCGATAAAGTCGAAGATTTGTTAT AAACAACTATACCGTTCTCATTTCTTTGTTGTACAAGCATACTATAATGG GAGTCAAATGTTATGAGTGCTCTTATATAGTTCCCATACCCTTACCTATT AATGTTCGTCACCTCGACTTCGTCCTATTTGTTTCCTGATATAATGAATT GCTAGAATTATCATACATTAGTCGATTTGTCAAGCACTACCTTGGGAATG AATACATTTAGAATATGATAATAGGGAGTTTATTGTTACGAGTTATGACT ACTCTCTTATAGTTCCCCTTCCCTTTCCTATTAGTGTTTGGCCTATCTGT TTCCTTTTAAAGTGAATCGATAGAATCAACATATCTGTTTCCTGTAATAA TGAGTTAATGTCACTTAAACACATTTAGTAAAATCCAAGGTGCTGCTTTT TATGTTATACATTTTGACTGGCTATTGTTTTCTTACAGTTTGATGATGAT GTTGATTCTTCTGGAAGTCTCCCAGACACACTGGATATTGGCGATGTTTC AGAACCTGTCGTATCAGCTGATTCTGCTTCGTCGAAACAGAAGAATGTTG CAGCTGAAGCCAGTACTTCATCTAATCCCTCGGCGTCAAGCAAGTTATCA TGA back to topprotein sequence of rna-TanjilR_13973_La_Tanjil_v1.0 >rna-TanjilR_13973_La_Tanjil_v1.0 ID=rna-TanjilR_13973_La_Tanjil_v1.0; Name=rna-TanjilR_13973_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=176bp MSSLNPYAASYVPLQKNEPSGVTFGTEKGSKNHDGRNLFYSSTSASNNMP GDFQPASNSYGSSSQNAAPLTDDLFTDEDHLDLDIEFLKMSFPDISEQSL RDVYVLNEDDLDAAIDMLNQLEFDDDVDSSGSLPDTLDIGDVSEPVVSAD SASSKQKNVAAEASTSSNPSASSKLS back to topmRNA from alignment at Chr_LG03-CM007363.1:22713699..22715251- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >rna-TanjilR_13973_La_Tanjil_v1.0 ID=rna-TanjilR_13973_La_Tanjil_v1.0; Name=rna-TanjilR_13973; organism=Lupinus angustifolius; type=mRNA; length=1553bp; location=Sequence derived from: Chr_LG03-CM007363.1:22713699..22715251- (Lupinus angustifolius ATGTCTTCTTTGAATCCATATGCAGCTTCATATGTGCCACTACAGAAAAA
TGAACCATCTGGTGTAACTTTTGGAACAGAAAAAGGTTCCAAGAATCATG
ATGGGAGGAACCTTTTTTATTCTAGCACTTCTGCTTCCAATAATATGCCT
GGTGATTTTCAACCTGCATCCAATTCTTACGGTTCGTCGTCGCAGAATGC
GGCACCGTTGACAGATGACCTTTTTACAGATGAAGATCACCTTGACTTGG
ATATTGAATTTCTGAAAATGTCATTTCCTGATATATCTGAGCAGTCCCTT
AGAGATGTCTACGTGTTAAACGAGGATGACTTGGATGCCGCTATTGACAT
GTTGAATCAACTTGAGGTAGTGTTCTATGTTTTTAGACTTCAAATGTATT
CATCAATTGATGGTAAAATGTTGAATCGATCTAGAACCGTTGTTTGGTCT
ATATGTGTGTTTGAATGTTGAATCACTGAATATGGTATTGTATTGGCATG
ATACTGATGGAAATTTGTGTGTTTCAACTTGAACATATTTATAAAGAAAA
AATAATAACTAATTGAATAAGTGATTCCGCACCTTCCGTTTCCATGTTTC
CCTTTCAATTCCCTTTATCCTTGAAGATTGACATCTTCAGATGGTGGTGC
ACAGGAACAAAGGTTTTTATGCCATCTTAACGTTGTTGAACCTCACCAAG
TGATTTGAGTTTACCAAAGGCAAAGCTTGAATTTTAGAATTGTGATCGAT
TTCTTCTCGTATTTCTTATCTTCCTGCTTCATTTGTTATTATGGTTAATT
TTTCCCATTTACTATGATTGTCTTGTTTATTCCACTTGTTTCTTTTGATT
CTTCCTTTCCCCTTCTCTTCTTTTGTTTTTATTCTAGGGATTGGACTGTT
AAATATTACACATCACTGGTTGGAACCCGATAAAGTCGAAGATTTGTTAT
AAACAACTATACCGTTCTCATTTCTTTGTTGTACAAGCATACTATAATGG
GAGTCAAATGTTATGAGTGCTCTTATATAGTTCCCATACCCTTACCTATT
AATGTTCGTCACCTCGACTTCGTCCTATTTGTTTCCTGATATAATGAATT
GCTAGAATTATCATACATTAGTCGATTTGTCAAGCACTACCTTGGGAATG
AATACATTTAGAATATGATAATAGGGAGTTTATTGTTACGAGTTATGACT
ACTCTCTTATAGTTCCCCTTCCCTTTCCTATTAGTGTTTGGCCTATCTGT
TTCCTTTTAAAGTGAATCGATAGAATCAACATATCTGTTTCCTGTAATAA
TGAGTTAATGTCACTTAAACACATTTAGTAAAATCCAAGGTGCTGCTTTT
TATGTTATACATTTTGACTGGCTATTGTTTTCTTACAGTTTGATGATGAT
GTTGATTCTTCTGGAAGTCTCCCAGACACACTGGATATTGGCGATGTTTC
AGAACCTGTCGTATCAGCTGATTCTGCTTCGTCGAAACAGAAGAATGTTG
CAGCTGAAGCCAGTACTTCATCTAATCCCTCGGCGTCAAGCAAGTTATCA
TGA back to topCoding sequence (CDS) from alignment at Chr_LG03-CM007363.1:22713699..22715251- >rna-TanjilR_13973_La_Tanjil_v1.0 ID=rna-TanjilR_13973_La_Tanjil_v1.0; Name=rna-TanjilR_13973; organism=Lupinus angustifolius; type=CDS; length=531bp; location=Sequence derived from: Chr_LG03-CM007363.1:22713699..22715251- (Lupinus angustifolius ATGTCTTCTTTGAATCCATATGCAGCTTCATATGTGCCACTACAGAAAAA TGAACCATCTGGTGTAACTTTTGGAACAGAAAAAGGTTCCAAGAATCATG ATGGGAGGAACCTTTTTTATTCTAGCACTTCTGCTTCCAATAATATGCCT GGTGATTTTCAACCTGCATCCAATTCTTACGGTTCGTCGTCGCAGAATGC GGCACCGTTGACAGATGACCTTTTTACAGATGAAGATCACCTTGACTTGG ATATTGAATTTCTGAAAATGTCATTTCCTGATATATCTGAGCAGTCCCTT AGAGATGTCTACGTGTTAAACGAGGATGACTTGGATGCCGCTATTGACAT GTTGAATCAACTTGAGTTTGATGATGATGTTGATTCTTCTGGAAGTCTCC CAGACACACTGGATATTGGCGATGTTTCAGAACCTGTCGTATCAGCTGAT TCTGCTTCGTCGAAACAGAAGAATGTTGCAGCTGAAGCCAGTACTTCATC TAATCCCTCGGCGTCAAGCAAGTTATCATGA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
Term | Definition |
IPR003892 | CUE |
Vocabulary: Molecular Function
Term | Definition |
GO:0005515 | protein binding |
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