rna-TanjilR_24126

Transcript Overview
Namerna-TanjilR_24126
Unique Namerna-TanjilR_24126_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length852
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG03-CM007363.1supercontigChr_LG03-CM007363.1:23013819..23014670 -Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL052Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL053Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL097Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL217Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL270Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL293Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR515Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL517Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR524Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR0867Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0883Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0896Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0928Cicer arietinum ICC 4958 genome v2Cicer arietinum
anccR0927Cajanus cajan Asha genome v1.0Cajanus cajan
anccR0931Cajanus cajan Asha genome v1.0Cajanus cajan
ancaR0730Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccR0945Cajanus cajan Asha genome v1.0Cajanus cajan
anccR0969Cajanus cajan Asha genome v1.0Cajanus cajan
ancaR0754Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0782Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0792Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancrR0878Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ancrR0883Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ancrR0946Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0619Pisum sativum Cameor genome v1aPisum sativum
anpsR0652Pisum sativum Cameor genome v1aPisum sativum
anpvR0829Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0838Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0860Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0899Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0751Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0761Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0808Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0840Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0863Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0704Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR0740Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
antifR0733Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0741Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR0737Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0745Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR0750Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0760Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvfhR0773Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvrvR0703Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR0722Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR0710Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR0735Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0838Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0839Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0868Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0886Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR0692Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0717Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR0775Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0798Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0829Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0719Cicer arietinum
ancarR0741Cicer arietinum
ancarR0766Cicer arietinum
anccaR0704Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0708Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0710Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0791Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0808Vigna umbellata FF25 genome v1.0Vigna umbellata
anccaR0748Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0831Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0838Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0873Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR0764Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0783Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0793Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvstR0798Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0819Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0833Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0844Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0840Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0852Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0881Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0893Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvasR0896Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anpvfR0871Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anvunR0717Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR0878Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anvunR0727Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR0900Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR0938Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
jg55418.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-XM_004501727.2Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Cc_v2.0_06949.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
XM_058927067.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vfaba.Tiffany.R1.2g149440.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vfaba.Hedin2.R1.2g185120.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
XM_058927076.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
rna-KK1_035128Cajanus cajan Asha genome v1.0Cajanus cajan

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-TanjilR_07881Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_24126gene-TanjilG_24126_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_24126rna-TanjilR_24126_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_24126_La_Tanjil_v1.0rna-TanjilR_24126_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_24126_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:23013819..23014670rna-TanjilR_24126_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:23013819..23014670Lupinus angustifoliusCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_24126_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:23013819..23014670rna-TanjilR_24126_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:23013819..23014670Lupinus angustifoliusexon


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_24126 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_24126_La_Tanjil_v1.0 ID=rna-TanjilR_24126_La_Tanjil_v1.0; Name=rna-TanjilR_24126; organism=Lupinus angustifolius; type=mRNA; length=852bp
ATGGCACCCATTTCCATAGAAGAACTCCACACATTTCACATAATCGACCG
TGAAGTCTTCTTTCGCTTGGTTATAAAACTAGCTCGTAACCCAGCTCAAT
CTCTTCTAGTAATGGCTTTGTGGCTATGGTTAGAAAGCATCAAATACCCT
AACTTTGTTCACAAAATGGTTGGTTTATCTGACTCAATGATTGATTATAT
TGCCAATGAAGCTGTTGCATGCTTGAGATGCTTGAATTTAGAATATAATA
AAACCCCAGATAGTGGTGGATTACCTCTAACCACAATCTTAATGCAGAAG
AAGATTTCTCTTCAGTTCTTTCGTCAAAAGAGGTTCACTGCCATAACTGG
TATCAGATATGTTCTTAATAACATTTGTGCTCGAATTTTCACTGATATTT
TGCAGTATGTTTTGGGTAACCCTAGCACTTCATATCCTAGTCATTATAGA
CCAATGATTGTTCCTGGTTTTCCTCACCCACTGTTTGGAACTTTTACTAT
ACCAATATTAAATTTTGAGGAACTGGATTTACTTGACCCAAGAATATGGA
TCAAAATGCATCCATATGATGGTACTACAGATGATGATAAAACTATGTTT
TTAACATTTTCTAAGGGATTCCCTGTAACAGAAGAAGAAGTGAGGCACAT
ATTTACAAGCTTATATGGTGATTGTATCAAGATTCTTAACATGGGTATTG
GGAACATGAGTGAACAAGTTTTGTTTGCCACCATGGTTGTAAATAATATC
GAAACCATTGATGAAATTCTGAATGGGAATCACGTTGCAAAGTTCAGGCT
TAATGGGAAACATATCTGGGCTCGCAAGTATGAAAGACGAGACAACATTT
GA
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protein sequence of rna-TanjilR_24126_La_Tanjil_v1.0

>rna-TanjilR_24126_La_Tanjil_v1.0 ID=rna-TanjilR_24126_La_Tanjil_v1.0; Name=rna-TanjilR_24126_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=283bp
MAPISIEELHTFHIIDREVFFRLVIKLARNPAQSLLVMALWLWLESIKYP
NFVHKMVGLSDSMIDYIANEAVACLRCLNLEYNKTPDSGGLPLTTILMQK
KISLQFFRQKRFTAITGIRYVLNNICARIFTDILQYVLGNPSTSYPSHYR
PMIVPGFPHPLFGTFTIPILNFEELDLLDPRIWIKMHPYDGTTDDDKTMF
LTFSKGFPVTEEEVRHIFTSLYGDCIKILNMGIGNMSEQVLFATMVVNNI
ETIDEILNGNHVAKFRLNGKHIWARKYERRDNI
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mRNA from alignment at Chr_LG03-CM007363.1:23013819..23014670-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_24126_La_Tanjil_v1.0 ID=rna-TanjilR_24126_La_Tanjil_v1.0; Name=rna-TanjilR_24126; organism=Lupinus angustifolius; type=mRNA; length=852bp; location=Sequence derived from: Chr_LG03-CM007363.1:23013819..23014670- (Lupinus angustifolius
ATGGCACCCATTTCCATAGAAGAACTCCACACATTTCACATAATCGACCG
TGAAGTCTTCTTTCGCTTGGTTATAAAACTAGCTCGTAACCCAGCTCAAT
CTCTTCTAGTAATGGCTTTGTGGCTATGGTTAGAAAGCATCAAATACCCT
AACTTTGTTCACAAAATGGTTGGTTTATCTGACTCAATGATTGATTATAT
TGCCAATGAAGCTGTTGCATGCTTGAGATGCTTGAATTTAGAATATAATA
AAACCCCAGATAGTGGTGGATTACCTCTAACCACAATCTTAATGCAGAAG
AAGATTTCTCTTCAGTTCTTTCGTCAAAAGAGGTTCACTGCCATAACTGG
TATCAGATATGTTCTTAATAACATTTGTGCTCGAATTTTCACTGATATTT
TGCAGTATGTTTTGGGTAACCCTAGCACTTCATATCCTAGTCATTATAGA
CCAATGATTGTTCCTGGTTTTCCTCACCCACTGTTTGGAACTTTTACTAT
ACCAATATTAAATTTTGAGGAACTGGATTTACTTGACCCAAGAATATGGA
TCAAAATGCATCCATATGATGGTACTACAGATGATGATAAAACTATGTTT
TTAACATTTTCTAAGGGATTCCCTGTAACAGAAGAAGAAGTGAGGCACAT
ATTTACAAGCTTATATGGTGATTGTATCAAGATTCTTAACATGGGTATTG
GGAACATGAGTGAACAAGTTTTGTTTGCCACCATGGTTGTAAATAATATC
GAAACCATTGATGAAATTCTGAATGGGAATCACGTTGCAAAGTTCAGGCT
TAATGGGAAACATATCTGGGCTCGCAAGTATGAAAGACGAGACAACATTT
GA
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Coding sequence (CDS) from alignment at Chr_LG03-CM007363.1:23013819..23014670-

>rna-TanjilR_24126_La_Tanjil_v1.0 ID=rna-TanjilR_24126_La_Tanjil_v1.0; Name=rna-TanjilR_24126; organism=Lupinus angustifolius; type=CDS; length=852bp; location=Sequence derived from: Chr_LG03-CM007363.1:23013819..23014670- (Lupinus angustifolius
ATGGCACCCATTTCCATAGAAGAACTCCACACATTTCACATAATCGACCG
TGAAGTCTTCTTTCGCTTGGTTATAAAACTAGCTCGTAACCCAGCTCAAT
CTCTTCTAGTAATGGCTTTGTGGCTATGGTTAGAAAGCATCAAATACCCT
AACTTTGTTCACAAAATGGTTGGTTTATCTGACTCAATGATTGATTATAT
TGCCAATGAAGCTGTTGCATGCTTGAGATGCTTGAATTTAGAATATAATA
AAACCCCAGATAGTGGTGGATTACCTCTAACCACAATCTTAATGCAGAAG
AAGATTTCTCTTCAGTTCTTTCGTCAAAAGAGGTTCACTGCCATAACTGG
TATCAGATATGTTCTTAATAACATTTGTGCTCGAATTTTCACTGATATTT
TGCAGTATGTTTTGGGTAACCCTAGCACTTCATATCCTAGTCATTATAGA
CCAATGATTGTTCCTGGTTTTCCTCACCCACTGTTTGGAACTTTTACTAT
ACCAATATTAAATTTTGAGGAACTGGATTTACTTGACCCAAGAATATGGA
TCAAAATGCATCCATATGATGGTACTACAGATGATGATAAAACTATGTTT
TTAACATTTTCTAAGGGATTCCCTGTAACAGAAGAAGAAGTGAGGCACAT
ATTTACAAGCTTATATGGTGATTGTATCAAGATTCTTAACATGGGTATTG
GGAACATGAGTGAACAAGTTTTGTTTGCCACCATGGTTGTAAATAATATC
GAAACCATTGATGAAATTCTGAATGGGAATCACGTTGCAAAGTTCAGGCT
TAATGGGAAACATATCTGGGCTCGCAAGTATGAAAGACGAGACAACATTT
GA
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