rna-TanjilR_30681

Transcript Overview
Namerna-TanjilR_30681
Unique Namerna-TanjilR_30681_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length363
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG03-CM007363.1supercontigChr_LG03-CM007363.1:23551225..23551587 -Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL270Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL293Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccR0955Cajanus cajan Asha genome v1.0Cajanus cajan
anccR0965Cajanus cajan Asha genome v1.0Cajanus cajan
anccR1004Cajanus cajan Asha genome v1.0Cajanus cajan
ancrR0878Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ancrR0897Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0619Pisum sativum Cameor genome v1aPisum sativum
anpsR0652Pisum sativum Cameor genome v1aPisum sativum
anpvR0825Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0827Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0829Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0899Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0750Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0751Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0761Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0840Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0873Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0876Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0704Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR0740Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anvrvR0700Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR0719Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR0733Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR0709Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR0710Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR0735Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0839Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0868Vicia sativa cv. Studenica genome v1.0Vicia sativa
anavjR0798Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0829Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0835Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anccaR0710Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0739Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0748Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0831Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0838Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0845Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR0768Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0793Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvstR0833Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0844Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0840Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0852Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0847Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0861Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anpvfR0868Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR0869Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anvunR0716Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR0871Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anvunR0717Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR0727Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR0938Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
evm.model.Chr09.1545Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigun09g217700.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigan.02G069200.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
rna-XM_014645059.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Cc_v2.0_07038.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Psat05G0115400-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vigst.02G054800.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
jg55274.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Phvul.009G085200.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-KK1_034277Cajanus cajan Asha genome v1.0Cajanus cajan
PvulFLAVERTChr09.622Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
XM_058925084.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vum_02G00575.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vigun09g217700.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Cr_02930.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Va04G065170.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
LR48_mrnaVigan04g228500Vigna angularis Jingnong 6 genome v1.1Vigna angularis

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-TanjilR_09875Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-TanjilR_12468Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_30681gene-TanjilG_30681_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_30681rna-TanjilR_30681_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_30681_La_Tanjil_v1.0rna-TanjilR_30681_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_30681_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:23551225..23551587rna-TanjilR_30681_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:23551225..23551587Lupinus angustifoliusCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_30681_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:23551225..23551587rna-TanjilR_30681_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:23551225..23551587Lupinus angustifoliusexon


Homology
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BLAST of rna-TanjilR_30681 vs. DB:Swiss
Match: GDU4_ARATH (Protein GLUTAMINE DUMPER 4 OS=Arabidopsis thaliana OX=3702 GN=GDU4 PE=2 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 5.755e-9
Identity = 31/77 (40.26%), Postives = 39/77 (50.65%), Query Frame = 1 
Query:    1 MFSLIACAIFILACSYCTHPLENENQHSDLERGGERESGFLHAKNNNDSVNNRVCENKVLVIMAGNDEPTFIATPTC 231
            M  LIA A+ ILACSY       ++    ++   E  SG   A        +  CE KVLVIMAG+D P F+ATP  
Sbjct:   47 MLGLIAFALLILACSYWRLSTSGDDSGERVDEEKESRSGVKAA--------SAACEEKVLVIMAGDDLPRFLATPAA 115
[Close]
BLAST of rna-TanjilR_30681 vs. DB:Swiss
Match: GDU3_ARATH (Protein GLUTAMINE DUMPER 3 OS=Arabidopsis thaliana OX=3702 GN=GDU3 PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 8.797e-9
Identity = 33/84 (39.29%), Postives = 43/84 (51.19%), Query Frame = 1 
Query:    1 MFSLIACAIFILACSYCT-----HPLENENQHSDLERGGERESGFLHAKNNNDSVNNRVCENKVLVIMAGNDEPTFIATPTCVT 237
            M  LIA A+ ILACSY          EN+++  DLE G          K +  +V       K LVIMAGN +PT++ATP+  T
Sbjct:   42 MLGLIAFALLILACSYWRLSGYLDGEENQSRERDLEVG--------DVKPDKTAVKPVALPEKFLVIMAGNVKPTYLATPSVKT 117
[Close]
BLAST of rna-TanjilR_30681 vs. DB:Swiss
Match: GDU2_ARATH (Protein GLUTAMINE DUMPER 2 OS=Arabidopsis thaliana OX=3702 GN=GDU2 PE=2 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 1.178e-8
Identity = 36/94 (38.30%), Postives = 48/94 (51.06%), Query Frame = 1 
Query:    1 MFSLIACAIFILACSYCTHPLENENQHSDLERGGERESGFLHAKNNNDSVNNRVCE--NKVLVIMAGNDEPTFIATPTCVTSSSVQCGVGNDSD 276
            M +LI  A+ ILACSY       E    DLE G +       AK +ND+   +  E   K LVIMAG+  PT++ATP   +  S  CG  N+ +
Sbjct:   42 MLALICVALLILACSYWRLSGSAER---DLEAGDD-------AKPDNDTNKTKHTEMPEKFLVIMAGDVRPTYLATPATRSEQSCTCGDHNEEE 125
[Close]
BLAST of rna-TanjilR_30681 vs. DB:Swiss
Match: GDU1_ARATH (Protein GLUTAMINE DUMPER 1 OS=Arabidopsis thaliana OX=3702 GN=GDU1 PE=1 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 4.294e-8
Identity = 30/75 (40.00%), Postives = 36/75 (48.00%), Query Frame = 1 
Query:    1 MFSLIACAIFILACSYCTHPLENENQHSDLERGGERESGFLHAKNNNDSVNNRVCENKVLVIMAGNDEPTFIATP 225
            M  LIA A+ ILACSY       E    +++   E  SG        D   N   E K LVIMAG D P ++ATP
Sbjct:   44 MLGLIAFALLILACSYWRLSSSGEEDGQNVDEEKESRSG--------DKAANGAYEEKFLVIMAGEDLPRYLATP 110
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_30681 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 4
Match NameE-valueIdentityDescription
GDU4_ARATH5.755e-940.26Protein GLUTAMINE DUMPER 4 OS=Arabidopsis thaliana... [more]
GDU3_ARATH8.797e-939.29Protein GLUTAMINE DUMPER 3 OS=Arabidopsis thaliana... [more]
GDU2_ARATH1.178e-838.30Protein GLUTAMINE DUMPER 2 OS=Arabidopsis thaliana... [more]
GDU1_ARATH4.294e-840.00Protein GLUTAMINE DUMPER 1 OS=Arabidopsis thaliana... [more]
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Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_30681_La_Tanjil_v1.0 ID=rna-TanjilR_30681_La_Tanjil_v1.0; Name=rna-TanjilR_30681; organism=Lupinus angustifolius; type=mRNA; length=363bp
ATGTTTTCTCTCATAGCTTGTGCAATCTTCATCTTAGCTTGCTCTTACTG
TACTCATCCATTAGAGAACGAAAATCAACACAGTGACTTAGAACGTGGTG
GTGAAAGAGAAAGTGGTTTTCTTCATGCAAAAAATAATAATGATTCTGTC
AATAATAGGGTTTGTGAAAACAAGGTTCTTGTCATTATGGCTGGAAATGA
TGAACCCACTTTCATAGCTACCCCTACTTGTGTCACCTCATCTTCTGTTC
AATGTGGAGTTGGGAATGATTCGGATAAAGATACTCAAATTCTTGAAACT
TGTGAGGGATTGAAGGAGAATATCAACTATGATAAAGCTACGAGTACGAG
TTCCGAGCAATGA
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protein sequence of rna-TanjilR_30681_La_Tanjil_v1.0

>rna-TanjilR_30681_La_Tanjil_v1.0 ID=rna-TanjilR_30681_La_Tanjil_v1.0; Name=rna-TanjilR_30681_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=120bp
MFSLIACAIFILACSYCTHPLENENQHSDLERGGERESGFLHAKNNNDSV
NNRVCENKVLVIMAGNDEPTFIATPTCVTSSSVQCGVGNDSDKDTQILET
CEGLKENINYDKATSTSSEQ
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mRNA from alignment at Chr_LG03-CM007363.1:23551225..23551587-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_30681_La_Tanjil_v1.0 ID=rna-TanjilR_30681_La_Tanjil_v1.0; Name=rna-TanjilR_30681; organism=Lupinus angustifolius; type=mRNA; length=363bp; location=Sequence derived from: Chr_LG03-CM007363.1:23551225..23551587- (Lupinus angustifolius
ATGTTTTCTCTCATAGCTTGTGCAATCTTCATCTTAGCTTGCTCTTACTG
TACTCATCCATTAGAGAACGAAAATCAACACAGTGACTTAGAACGTGGTG
GTGAAAGAGAAAGTGGTTTTCTTCATGCAAAAAATAATAATGATTCTGTC
AATAATAGGGTTTGTGAAAACAAGGTTCTTGTCATTATGGCTGGAAATGA
TGAACCCACTTTCATAGCTACCCCTACTTGTGTCACCTCATCTTCTGTTC
AATGTGGAGTTGGGAATGATTCGGATAAAGATACTCAAATTCTTGAAACT
TGTGAGGGATTGAAGGAGAATATCAACTATGATAAAGCTACGAGTACGAG
TTCCGAGCAATGA
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Coding sequence (CDS) from alignment at Chr_LG03-CM007363.1:23551225..23551587-

>rna-TanjilR_30681_La_Tanjil_v1.0 ID=rna-TanjilR_30681_La_Tanjil_v1.0; Name=rna-TanjilR_30681; organism=Lupinus angustifolius; type=CDS; length=363bp; location=Sequence derived from: Chr_LG03-CM007363.1:23551225..23551587- (Lupinus angustifolius
ATGTTTTCTCTCATAGCTTGTGCAATCTTCATCTTAGCTTGCTCTTACTG
TACTCATCCATTAGAGAACGAAAATCAACACAGTGACTTAGAACGTGGTG
GTGAAAGAGAAAGTGGTTTTCTTCATGCAAAAAATAATAATGATTCTGTC
AATAATAGGGTTTGTGAAAACAAGGTTCTTGTCATTATGGCTGGAAATGA
TGAACCCACTTTCATAGCTACCCCTACTTGTGTCACCTCATCTTCTGTTC
AATGTGGAGTTGGGAATGATTCGGATAAAGATACTCAAATTCTTGAAACT
TGTGAGGGATTGAAGGAGAATATCAACTATGATAAAGCTACGAGTACGAG
TTCCGAGCAATGA
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