Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
rna-TanjilR_30681 rna-TanjilR_30681_La_Tanjil_v1.0-protein Lupinus angustifolius polypeptide
rna-TanjilR_30681_La_Tanjil_v1.0 rna-TanjilR_30681_La_Tanjil_v1.0 Lupinus angustifolius polypeptide
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
rna-TanjilR_30681_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:23551225..23551587 rna-TanjilR_30681_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:23551225..23551587 Lupinus angustifolius CDS
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
rna-TanjilR_30681_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:23551225..23551587 rna-TanjilR_30681_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:23551225..23551587 Lupinus angustifolius exon
Homology
BLAST of rna-TanjilR_30681 vs. DB:Swiss
Match:
GDU4_ARATH (Protein GLUTAMINE DUMPER 4 OS=Arabidopsis thaliana OX=3702 GN=GDU4 PE=2 SV=1)
HSP 1 Score: 54.299 bits (129), Expect = 5.755e-9
Identity = 31/77 (40.26%), Postives = 39/77 (50.65%), Query Frame = 1
Query: 1 MFSLIACAIFILACSYCTHPLENENQHSDLERGGERESGFLHAKNNNDSVNNRVCENKVLVIMAGNDEPTFIATPTC 231
M LIA A+ ILACSY ++ ++ E SG A + CE KVLVIMAG+D P F+ATP
Sbjct: 47 MLGLIAFALLILACSYWRLSTSGDDSGERVDEEKESRSGVKAA--------SAACEEKVLVIMAGDDLPRFLATPAA 115
BLAST of rna-TanjilR_30681 vs. DB:Swiss
Match:
GDU3_ARATH (Protein GLUTAMINE DUMPER 3 OS=Arabidopsis thaliana OX=3702 GN=GDU3 PE=2 SV=1)
HSP 1 Score: 53.5286 bits (127), Expect = 8.797e-9
Identity = 33/84 (39.29%), Postives = 43/84 (51.19%), Query Frame = 1
Query: 1 MFSLIACAIFILACSYCT-----HPLENENQHSDLERGGERESGFLHAKNNNDSVNNRVCENKVLVIMAGNDEPTFIATPTCVT 237
M LIA A+ ILACSY EN+++ DLE G K + +V K LVIMAGN +PT++ATP+ T
Sbjct: 42 MLGLIAFALLILACSYWRLSGYLDGEENQSRERDLEVG--------DVKPDKTAVKPVALPEKFLVIMAGNVKPTYLATPSVKT 117
BLAST of rna-TanjilR_30681 vs. DB:Swiss
Match:
GDU2_ARATH (Protein GLUTAMINE DUMPER 2 OS=Arabidopsis thaliana OX=3702 GN=GDU2 PE=2 SV=1)
HSP 1 Score: 52.7582 bits (125), Expect = 1.178e-8
Identity = 36/94 (38.30%), Postives = 48/94 (51.06%), Query Frame = 1
Query: 1 MFSLIACAIFILACSYCTHPLENENQHSDLERGGERESGFLHAKNNNDSVNNRVCE--NKVLVIMAGNDEPTFIATPTCVTSSSVQCGVGNDSD 276
M +LI A+ ILACSY E DLE G + AK +ND+ + E K LVIMAG+ PT++ATP + S CG N+ +
Sbjct: 42 MLALICVALLILACSYWRLSGSAER---DLEAGDD-------AKPDNDTNKTKHTEMPEKFLVIMAGDVRPTYLATPATRSEQSCTCGDHNEEE 125
BLAST of rna-TanjilR_30681 vs. DB:Swiss
Match:
GDU1_ARATH (Protein GLUTAMINE DUMPER 1 OS=Arabidopsis thaliana OX=3702 GN=GDU1 PE=1 SV=1)
HSP 1 Score: 51.9878 bits (123), Expect = 4.294e-8
Identity = 30/75 (40.00%), Postives = 36/75 (48.00%), Query Frame = 1
Query: 1 MFSLIACAIFILACSYCTHPLENENQHSDLERGGERESGFLHAKNNNDSVNNRVCENKVLVIMAGNDEPTFIATP 225
M LIA A+ ILACSY E +++ E SG D N E K LVIMAG D P ++ATP
Sbjct: 44 MLGLIAFALLILACSYWRLSSSGEEDGQNVDEEKESRSG--------DKAANGAYEEKFLVIMAGEDLPRYLATP 110
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_30681 vs. DB:Swiss
Analysis Date: 2020-01-28 (
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot )
Total hits: 4
50 100 150 200 250 300 350 Expect = 5.75e-9 / Id = 40.26 Expect = 8.80e-9 / Id = 39.29 Expect = 1.18e-8 / Id = 38.30 Expect = 4.29e-8 / Id = 40.00 Sequence GDU4_ARATH GDU3_ARATH GDU2_ARATH GDU1_ARATH
Match Name E-value Identity Description
GDU4_ARATH 5.755e-9 40.26 Protein GLUTAMINE DUMPER 4 OS=Arabidopsis thaliana... [more]
GDU3_ARATH 8.797e-9 39.29 Protein GLUTAMINE DUMPER 3 OS=Arabidopsis thaliana... [more]
GDU2_ARATH 1.178e-8 38.30 Protein GLUTAMINE DUMPER 2 OS=Arabidopsis thaliana... [more]
GDU1_ARATH 4.294e-8 40.00 Protein GLUTAMINE DUMPER 1 OS=Arabidopsis thaliana... [more]
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Sequences
The
following sequences are available for this feature:
mRNA sequence
>rna-TanjilR_30681_La_Tanjil_v1.0 ID=rna-TanjilR_30681_La_Tanjil_v1.0; Name=rna-TanjilR_30681; organism=Lupinus angustifolius; type=mRNA; length=363bp ATGTTTTCTCTCATAGCTTGTGCAATCTTCATCTTAGCTTGCTCTTACTG TACTCATCCATTAGAGAACGAAAATCAACACAGTGACTTAGAACGTGGTG GTGAAAGAGAAAGTGGTTTTCTTCATGCAAAAAATAATAATGATTCTGTC AATAATAGGGTTTGTGAAAACAAGGTTCTTGTCATTATGGCTGGAAATGA TGAACCCACTTTCATAGCTACCCCTACTTGTGTCACCTCATCTTCTGTTC AATGTGGAGTTGGGAATGATTCGGATAAAGATACTCAAATTCTTGAAACT TGTGAGGGATTGAAGGAGAATATCAACTATGATAAAGCTACGAGTACGAG TTCCGAGCAATGA back to top protein sequence of rna-TanjilR_30681_La_Tanjil_v1.0
>rna-TanjilR_30681_La_Tanjil_v1.0 ID=rna-TanjilR_30681_La_Tanjil_v1.0; Name=rna-TanjilR_30681_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=120bp MFSLIACAIFILACSYCTHPLENENQHSDLERGGERESGFLHAKNNNDSV NNRVCENKVLVIMAGNDEPTFIATPTCVTSSSVQCGVGNDSDKDTQILET CEGLKENINYDKATSTSSEQ back to top mRNA from alignment at Chr_LG03-CM007363.1:23551225..23551587-
Legend: polypeptide CDS exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_30681_La_Tanjil_v1.0 ID=rna-TanjilR_30681_La_Tanjil_v1.0; Name=rna-TanjilR_30681; organism=Lupinus angustifolius; type=mRNA; length=363bp; location=Sequence derived from: Chr_LG03-CM007363.1:23551225..23551587- (Lupinus angustifoliusATGTTTTCTCTCATAGCTTGTGCAATCTTCATCTTAGCTTGCTCTTACTG
TACTCATCCATTAGAGAACGAAAATCAACACAGTGACTTAGAACGTGGTG
GTGAAAGAGAAAGTGGTTTTCTTCATGCAAAAAATAATAATGATTCTGTC
AATAATAGGGTTTGTGAAAACAAGGTTCTTGTCATTATGGCTGGAAATGA
TGAACCCACTTTCATAGCTACCCCTACTTGTGTCACCTCATCTTCTGTTC
AATGTGGAGTTGGGAATGATTCGGATAAAGATACTCAAATTCTTGAAACT
TGTGAGGGATTGAAGGAGAATATCAACTATGATAAAGCTACGAGTACGAG
TTCCGAGCAATGA back to top Coding sequence (CDS) from alignment at Chr_LG03-CM007363.1:23551225..23551587-
>rna-TanjilR_30681_La_Tanjil_v1.0 ID=rna-TanjilR_30681_La_Tanjil_v1.0; Name=rna-TanjilR_30681; organism=Lupinus angustifolius; type=CDS; length=363bp; location=Sequence derived from: Chr_LG03-CM007363.1:23551225..23551587- (Lupinus angustifolius ATGTTTTCTCTCATAGCTTGTGCAATCTTCATCTTAGCTTGCTCTTACTG TACTCATCCATTAGAGAACGAAAATCAACACAGTGACTTAGAACGTGGTG GTGAAAGAGAAAGTGGTTTTCTTCATGCAAAAAATAATAATGATTCTGTC AATAATAGGGTTTGTGAAAACAAGGTTCTTGTCATTATGGCTGGAAATGA TGAACCCACTTTCATAGCTACCCCTACTTGTGTCACCTCATCTTCTGTTC AATGTGGAGTTGGGAATGATTCGGATAAAGATACTCAAATTCTTGAAACT TGTGAGGGATTGAAGGAGAATATCAACTATGATAAAGCTACGAGTACGAG TTCCGAGCAATGA back to top