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Transcript Overview
| Name | rna-TanjilR_30638 |
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| Unique Name | rna-TanjilR_30638_La_Tanjil_v1.0 |
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| Type | mRNA |
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| Organism | Lupinus angustifolius (blue lupin) |
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| Sequence length | 1254 |
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| Product | hypothetical protein |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| rna-TanjilR_30638 | rna-TanjilR_30638_La_Tanjil_v1.0-protein | Lupinus angustifolius | polypeptide |
| rna-TanjilR_30638_La_Tanjil_v1.0 | rna-TanjilR_30638_La_Tanjil_v1.0 | Lupinus angustifolius | polypeptide |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| rna-TanjilR_30638_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:23941798..23943051 | rna-TanjilR_30638_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:23941798..23943051 | Lupinus angustifolius | CDS |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| rna-TanjilR_30638_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:23941798..23943051 | rna-TanjilR_30638_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:23941798..23943051 | Lupinus angustifolius | exon |
Homology
BLAST of rna-TanjilR_30638 vs. DB:Swiss
Match: P2A10_ARATH (Protein PHLOEM PROTEIN 2-LIKE A10 OS=Arabidopsis thaliana OX=3702 GN=PP2A10 PE=2 SV=1) HSP 1 Score: 342.813 bits (878), Expect = 6.849e-114 Identity = 193/409 (47.19%), Postives = 281/409 (68.70%), Query Frame = 1
Query: 16 FSRRNKKSLLIIAFFGASGYGAYKAYNLPSVVRKRNHIIKLLRALISLAEMVSDSAETISVLTKDFNQFIASDSDEIPRSLRQLSKIATSKEFSVSLSRVSEALTIGILRGNRLQMKKNNPSEINAENSNFSDRLLEKLFSKAGTXXXXXXXXXXARNLVLGFYAEPLNGKINSAKARSEGSD---FPPWVSVICDERCRKVIGDCVQTFVSTAVTVFLDRTVDVNSFDEMFSGMTNPKHQEKVKDILISLCNGAVETLVKTSHQVLTXXXXXXXXXXXXXXIAFKSEGPI-ATEDGYLQPEAFLQQHKSGNSISGVQDVGLLEQVRSTMSVPANXXXXXXXXXXXXFETLRSFVEFLLWRISDWFKRSASKAHNTVLDKGLEVVTYVGAKSSVVITFCIALYLHITGG 1230
S+R +K L+ +A G SGYGAYK Y+LPSV RKR + KL A++S+AE++SDSAET+S++++D F+ SDSDEIP SL+Q++KI TS EF+ SLSRVS+A+TIG RG + + + + +S+ DR+++K+FS+AGTGFVSVVVGSFA+NLVLGFY+ GK+ S + EGSD P WV+++ D++CR+++ DC++ F STA+ V+LD+T+D+N++D++F G+TNPKHQ+ VKD+L+S+CNGA+ET+V+TSH V T+ +S+ I ED + + S GV+ G E + +T++VP+NRR + DVT RVT ET RS + F++ + F++S + H V D+G + V YVGAKSSV+IT C+ALYLHI G
Sbjct: 13 LSQRRRKWLIFMAISGVSGYGAYKVYHLPSVARKRKRLFKLFGAIVSVAELISDSAETLSMVSRDVKDFLNSDSDEIPNSLKQIAKITTSNEFTDSLSRVSQAVTIGAFRGYKSESSIGDSGIEKSSDSSVVDRVIDKVFSEAGTGFVSVVVGSFAKNLVLGFYS----GKVESG-VKCEGSDSSETPRWVTLLGDDKCRELLADCIERFTSTAIGVYLDKTMDINTYDQIFEGLTNPKHQDSVKDVLVSVCNGALETIVRTSHDVFTSS---------------RSKNVIEEIEDDDFKSNGSARSKMVSESGDGVKSNGWTEAIATTLAVPSNRRFMFDVTGRVTLETTRSIIAFIMVKTFQGFRKSINVVHEEVTDRGRQAVEYVGAKSSVIITVCLALYLHIISG 401
The following BLAST results are available for this feature:
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_30638_La_Tanjil_v1.0 ID=rna-TanjilR_30638_La_Tanjil_v1.0; Name=rna-TanjilR_30638; organism=Lupinus angustifolius; type=mRNA; length=1254bp
ATGGACCTCGTCAATTTCTCTCGAAGAAACAAAAAATCGCTTCTCATAAT
CGCTTTTTTTGGAGCCTCTGGTTATGGCGCTTACAAGGCCTACAATTTAC
CCTCCGTGGTTCGAAAGAGGAACCACATCATTAAGCTTCTCAGAGCTTTG
ATTTCTCTTGCGGAAATGGTTTCTGATTCCGCAGAAACTATTTCCGTTCT
CACCAAGGATTTCAACCAATTCATCGCATCTGATTCGGACGAAATTCCCC
GAAGTTTGAGGCAGTTATCAAAAATTGCAACATCGAAGGAGTTCTCTGTG
TCCTTATCTAGGGTTTCGGAGGCTCTGACCATTGGAATTTTGCGAGGGAA
TAGGTTACAGATGAAGAAGAATAATCCTTCTGAAATAAACGCTGAAAATT
CGAACTTTTCGGATAGGCTATTGGAGAAGCTTTTCTCTAAAGCCGGAACC
GGTTTTGTATCCGTCGTTGTTGGAAGCTTTGCTAGGAATCTGGTTTTGGG
TTTTTATGCTGAGCCTCTTAATGGTAAAATCAATTCTGCAAAGGCGCGAT
CAGAGGGTTCGGATTTTCCTCCTTGGGTGAGTGTGATTTGTGATGAAAGG
TGTAGGAAGGTAATAGGGGATTGTGTTCAAACCTTTGTAAGCACTGCAGT
TACTGTTTTTCTTGACAGAACAGTGGATGTTAATAGTTTTGATGAAATGT
TTTCTGGAATGACCAACCCGAAACACCAGGAAAAGGTTAAGGATATTCTG
ATTTCATTATGTAACGGTGCTGTTGAAACGTTGGTTAAAACATCTCACCA
GGTGTTGACAAACCCAAGTGTGAAATCGAATTCGAGTTTGCCTGTGTCTT
CTATTGCTTTTAAGAGTGAAGGACCAATTGCAACTGAAGATGGGTATCTG
CAACCAGAAGCATTTCTTCAACAACATAAATCTGGAAATTCGATTAGTGG
GGTTCAGGATGTTGGATTGCTTGAACAGGTTAGATCAACAATGTCTGTGC
CGGCCAACAGAAGACTTGTGCTTGATGTGACGAGGAGGGTGACATTTGAA
ACATTGAGGTCATTTGTGGAGTTTTTGCTATGGAGAATATCAGACTGGTT
CAAAAGGAGTGCGAGCAAAGCTCATAATACGGTCCTGGACAAAGGACTAG
AAGTTGTTACATATGTTGGAGCTAAGTCTTCCGTTGTTATTACCTTCTGT
ATTGCTTTGTATTTACATATTACGGGTGGTGGTAGGATTCTCCTGCCTGC
ATAG back to topprotein sequence of rna-TanjilR_30638_La_Tanjil_v1.0 >rna-TanjilR_30638_La_Tanjil_v1.0 ID=rna-TanjilR_30638_La_Tanjil_v1.0; Name=rna-TanjilR_30638_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=417bp
MDLVNFSRRNKKSLLIIAFFGASGYGAYKAYNLPSVVRKRNHIIKLLRAL
ISLAEMVSDSAETISVLTKDFNQFIASDSDEIPRSLRQLSKIATSKEFSV
SLSRVSEALTIGILRGNRLQMKKNNPSEINAENSNFSDRLLEKLFSKAGT
GFVSVVVGSFARNLVLGFYAEPLNGKINSAKARSEGSDFPPWVSVICDER
CRKVIGDCVQTFVSTAVTVFLDRTVDVNSFDEMFSGMTNPKHQEKVKDIL
ISLCNGAVETLVKTSHQVLTNPSVKSNSSLPVSSIAFKSEGPIATEDGYL
QPEAFLQQHKSGNSISGVQDVGLLEQVRSTMSVPANRRLVLDVTRRVTFE
TLRSFVEFLLWRISDWFKRSASKAHNTVLDKGLEVVTYVGAKSSVVITFC
IALYLHITGGGRILLPA back to topmRNA from alignment at Chr_LG03-CM007363.1:23941798..23943051- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >rna-TanjilR_30638_La_Tanjil_v1.0 ID=rna-TanjilR_30638_La_Tanjil_v1.0; Name=rna-TanjilR_30638; organism=Lupinus angustifolius; type=mRNA; length=1254bp; location=Sequence derived from: Chr_LG03-CM007363.1:23941798..23943051- (Lupinus angustifolius
ATGGACCTCGTCAATTTCTCTCGAAGAAACAAAAAATCGCTTCTCATAAT
CGCTTTTTTTGGAGCCTCTGGTTATGGCGCTTACAAGGCCTACAATTTAC
CCTCCGTGGTTCGAAAGAGGAACCACATCATTAAGCTTCTCAGAGCTTTG
ATTTCTCTTGCGGAAATGGTTTCTGATTCCGCAGAAACTATTTCCGTTCT
CACCAAGGATTTCAACCAATTCATCGCATCTGATTCGGACGAAATTCCCC
GAAGTTTGAGGCAGTTATCAAAAATTGCAACATCGAAGGAGTTCTCTGTG
TCCTTATCTAGGGTTTCGGAGGCTCTGACCATTGGAATTTTGCGAGGGAA
TAGGTTACAGATGAAGAAGAATAATCCTTCTGAAATAAACGCTGAAAATT
CGAACTTTTCGGATAGGCTATTGGAGAAGCTTTTCTCTAAAGCCGGAACC
GGTTTTGTATCCGTCGTTGTTGGAAGCTTTGCTAGGAATCTGGTTTTGGG
TTTTTATGCTGAGCCTCTTAATGGTAAAATCAATTCTGCAAAGGCGCGAT
CAGAGGGTTCGGATTTTCCTCCTTGGGTGAGTGTGATTTGTGATGAAAGG
TGTAGGAAGGTAATAGGGGATTGTGTTCAAACCTTTGTAAGCACTGCAGT
TACTGTTTTTCTTGACAGAACAGTGGATGTTAATAGTTTTGATGAAATGT
TTTCTGGAATGACCAACCCGAAACACCAGGAAAAGGTTAAGGATATTCTG
ATTTCATTATGTAACGGTGCTGTTGAAACGTTGGTTAAAACATCTCACCA
GGTGTTGACAAACCCAAGTGTGAAATCGAATTCGAGTTTGCCTGTGTCTT
CTATTGCTTTTAAGAGTGAAGGACCAATTGCAACTGAAGATGGGTATCTG
CAACCAGAAGCATTTCTTCAACAACATAAATCTGGAAATTCGATTAGTGG
GGTTCAGGATGTTGGATTGCTTGAACAGGTTAGATCAACAATGTCTGTGC
CGGCCAACAGAAGACTTGTGCTTGATGTGACGAGGAGGGTGACATTTGAA
ACATTGAGGTCATTTGTGGAGTTTTTGCTATGGAGAATATCAGACTGGTT
CAAAAGGAGTGCGAGCAAAGCTCATAATACGGTCCTGGACAAAGGACTAG
AAGTTGTTACATATGTTGGAGCTAAGTCTTCCGTTGTTATTACCTTCTGT
ATTGCTTTGTATTTACATATTACGGGTGGTGGTAGGATTCTCCTGCCTGC
ATAG back to topCoding sequence (CDS) from alignment at Chr_LG03-CM007363.1:23941798..23943051- >rna-TanjilR_30638_La_Tanjil_v1.0 ID=rna-TanjilR_30638_La_Tanjil_v1.0; Name=rna-TanjilR_30638; organism=Lupinus angustifolius; type=CDS; length=1254bp; location=Sequence derived from: Chr_LG03-CM007363.1:23941798..23943051- (Lupinus angustifolius
ATGGACCTCGTCAATTTCTCTCGAAGAAACAAAAAATCGCTTCTCATAAT
CGCTTTTTTTGGAGCCTCTGGTTATGGCGCTTACAAGGCCTACAATTTAC
CCTCCGTGGTTCGAAAGAGGAACCACATCATTAAGCTTCTCAGAGCTTTG
ATTTCTCTTGCGGAAATGGTTTCTGATTCCGCAGAAACTATTTCCGTTCT
CACCAAGGATTTCAACCAATTCATCGCATCTGATTCGGACGAAATTCCCC
GAAGTTTGAGGCAGTTATCAAAAATTGCAACATCGAAGGAGTTCTCTGTG
TCCTTATCTAGGGTTTCGGAGGCTCTGACCATTGGAATTTTGCGAGGGAA
TAGGTTACAGATGAAGAAGAATAATCCTTCTGAAATAAACGCTGAAAATT
CGAACTTTTCGGATAGGCTATTGGAGAAGCTTTTCTCTAAAGCCGGAACC
GGTTTTGTATCCGTCGTTGTTGGAAGCTTTGCTAGGAATCTGGTTTTGGG
TTTTTATGCTGAGCCTCTTAATGGTAAAATCAATTCTGCAAAGGCGCGAT
CAGAGGGTTCGGATTTTCCTCCTTGGGTGAGTGTGATTTGTGATGAAAGG
TGTAGGAAGGTAATAGGGGATTGTGTTCAAACCTTTGTAAGCACTGCAGT
TACTGTTTTTCTTGACAGAACAGTGGATGTTAATAGTTTTGATGAAATGT
TTTCTGGAATGACCAACCCGAAACACCAGGAAAAGGTTAAGGATATTCTG
ATTTCATTATGTAACGGTGCTGTTGAAACGTTGGTTAAAACATCTCACCA
GGTGTTGACAAACCCAAGTGTGAAATCGAATTCGAGTTTGCCTGTGTCTT
CTATTGCTTTTAAGAGTGAAGGACCAATTGCAACTGAAGATGGGTATCTG
CAACCAGAAGCATTTCTTCAACAACATAAATCTGGAAATTCGATTAGTGG
GGTTCAGGATGTTGGATTGCTTGAACAGGTTAGATCAACAATGTCTGTGC
CGGCCAACAGAAGACTTGTGCTTGATGTGACGAGGAGGGTGACATTTGAA
ACATTGAGGTCATTTGTGGAGTTTTTGCTATGGAGAATATCAGACTGGTT
CAAAAGGAGTGCGAGCAAAGCTCATAATACGGTCCTGGACAAAGGACTAG
AAGTTGTTACATATGTTGGAGCTAAGTCTTCCGTTGTTATTACCTTCTGT
ATTGCTTTGTATTTACATATTACGGGTGGTGGTAGGATTCTCCTGCCTGC
ATAG back to top
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