Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
rna-TanjilR_30609 rna-TanjilR_30609_La_Tanjil_v1.0-protein Lupinus angustifolius polypeptide rna-TanjilR_30609_La_Tanjil_v1.0 rna-TanjilR_30609_La_Tanjil_v1.0 Lupinus angustifolius polypeptide
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
rna-TanjilR_30609_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24234001..24234299 rna-TanjilR_30609_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24234001..24234299 Lupinus angustifolius CDS rna-TanjilR_30609_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24233665..24233779 rna-TanjilR_30609_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24233665..24233779 Lupinus angustifolius CDS rna-TanjilR_30609_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24231542..24231718 rna-TanjilR_30609_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24231542..24231718 Lupinus angustifolius CDS
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
rna-TanjilR_30609_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24234001..24234299 rna-TanjilR_30609_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24234001..24234299 Lupinus angustifolius exon rna-TanjilR_30609_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24233665..24233779 rna-TanjilR_30609_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24233665..24233779 Lupinus angustifolius exon rna-TanjilR_30609_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24231542..24231718 rna-TanjilR_30609_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24231542..24231718 Lupinus angustifolius exon
Homology
BLAST of rna-TanjilR_30609 vs. DB:Swiss
Match:
NRPE1_ARATH (DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPE1 PE=1 SV=1)
HSP 1 Score: 67.3958 bits (163), Expect = 5.833e-10
Identity = 31/61 (50.82%), Postives = 38/61 (62.30%), Query Frame = 2
Query: 2573 FL*VDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREYIRYKYPTHADRFIREYFKRGSGSG 2755
F+ VD+H F SRC FVV TDG DFSY+K L Y+ KYP A+ FI +YF + SG
Sbjct: 1794 FITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTKPRPSG 1854
BLAST of rna-TanjilR_30609 vs. DB:Swiss
Match:
DCL_SOLLC (Protein DCL, chloroplastic OS=Solanum lycopersicum OX=4081 GN=DCL PE=2 SV=1)
HSP 1 Score: 62.7734 bits (151), Expect = 1.484e-9
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 2
Query: 2591 HPQFRHSRCLFVVRTDGGWIDFSYQKCLREYIRYKYPTHADRFIREYFKR 2740
HP F +SRCLF+VR DG +DFSY KC++ IR YP +AD FI +F++
Sbjct: 170 HPDFENSRCLFIVRKDGETVDFSYWKCIKGLIRKNYPLYADSFILRHFRK 219
BLAST of rna-TanjilR_30609 vs. DB:Swiss
Match:
DCL_ARATH (Protein DCL homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DCL PE=2 SV=1)
HSP 1 Score: 62.3882 bits (150), Expect = 1.870e-9
Identity = 27/53 (50.94%), Postives = 37/53 (69.81%), Query Frame = 2
Query: 2582 VDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREYIRYKYPTHADRFIREYFKR 2740
V HP F SRC+F+VR DG +DFSY KC++ I+ KYP +AD FI +F++
Sbjct: 162 VGHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRK 214
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_30609 vs. DB:Swiss
Analysis Date: 2020-01-28 (
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot )
Total hits: 3
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 Expect = 5.83e-10 / Id = 50.82 Expect = 1.48e-9 / Id = 54.00 Expect = 1.87e-9 / Id = 50.94 Sequence NRPE1_ARATH DCL_SOLLC DCL_ARATH
Match Name E-value Identity Description
NRPE1_ARATH 5.833e-10 50.82 DNA-directed RNA polymerase V subunit 1 OS=Arabido... [more] DCL_SOLLC 1.484e-9 54.00 Protein DCL, chloroplastic OS=Solanum lycopersicum... [more] DCL_ARATH 1.870e-9 50.94 Protein DCL homolog, chloroplastic OS=Arabidopsis ... [more]
back to top
Sequences
The
following sequences are available for this feature:
mRNA sequence
>rna-TanjilR_30609_La_Tanjil_v1.0 ID=rna-TanjilR_30609_La_Tanjil_v1.0; Name=rna-TanjilR_30609; organism=Lupinus angustifolius; type=mRNA; length=2758bp back to top protein sequence of rna-TanjilR_30609_La_Tanjil_v1.0
>rna-TanjilR_30609_La_Tanjil_v1.0 ID=rna-TanjilR_30609_La_Tanjil_v1.0; Name=rna-TanjilR_30609_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=196bp back to top mRNA from alignment at Chr_LG03-CM007363.1:24231542..24234299-
Legend: polypeptide CDS exon mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_30609_La_Tanjil_v1.0 ID=rna-TanjilR_30609_La_Tanjil_v1.0; Name=rna-TanjilR_30609; organism=Lupinus angustifolius; type=mRNA; length=2758bp; location=Sequence derived from: Chr_LG03-CM007363.1:24231542..24234299- (Lupinus angustifoliusATGGCTACTCCTCTTTTTCTGAGACAATTTTTGCATCTTCGTGTTCACGT
GTATAACTACAAACGGTTTACTTTCAGAGACGTTGCGCCGCCTCACCGAC
TATGGTGCAGCGCCGCCACCAACCAACCGTTGAATGAAGATGAAGACAAA
GTAAGTAACTTTGTAAGAGCCAAGGAGATGTCAAATTACACGCCGTGGGA
TGACCCAGATTATAGGACATGGAAGGATAAAGAAAGGGAAATCCTCAGTG
ACATTGAACCTATCATTTTACTAACCAAAGATATTCTCCATTCCAGAAG GTACTTGGATGGAGAGCAACTTAGTGTGGA
GGATGAGAAAGTTGTAGTAGAGAGGCTCCTTGCTTATCATCCACAAACTC
AAGATAAGATTGGTTCTGGTCTTGATTCCATTATG GTTGATCGTCATCCCCAAT
TTCGACACTCAAGGTGTCTTTTTGTGGTAAGAACTGATGGCGGCTGGATC
GATTTCTCCTATCAGAAGTGCCTTCGGGAATACATCAGATATAAGTACCC
AACTCACGCAGACAGGTTCATTCGAGAATATTTTAAGCGTGGGAGTGGGA
GCGGTTGA back to top Coding sequence (CDS) from alignment at Chr_LG03-CM007363.1:24231542..24234299-
>rna-TanjilR_30609_La_Tanjil_v1.0 ID=rna-TanjilR_30609_La_Tanjil_v1.0; Name=rna-TanjilR_30609; organism=Lupinus angustifolius; type=CDS; length=591bp; location=Sequence derived from: Chr_LG03-CM007363.1:24231542..24234299- (Lupinus angustifolius back to top
