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Transcript Overview
| Name | rna-TanjilR_30609 |
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| Unique Name | rna-TanjilR_30609_La_Tanjil_v1.0 |
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| Type | mRNA |
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| Organism | Lupinus angustifolius (blue lupin) |
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| Sequence length | 2758 |
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| Product | hypothetical protein |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| rna-TanjilR_30609 | rna-TanjilR_30609_La_Tanjil_v1.0-protein | Lupinus angustifolius | polypeptide |
| rna-TanjilR_30609_La_Tanjil_v1.0 | rna-TanjilR_30609_La_Tanjil_v1.0 | Lupinus angustifolius | polypeptide |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| rna-TanjilR_30609_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24234001..24234299 | rna-TanjilR_30609_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24234001..24234299 | Lupinus angustifolius | CDS |
| rna-TanjilR_30609_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24233665..24233779 | rna-TanjilR_30609_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24233665..24233779 | Lupinus angustifolius | CDS |
| rna-TanjilR_30609_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24231542..24231718 | rna-TanjilR_30609_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24231542..24231718 | Lupinus angustifolius | CDS |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| rna-TanjilR_30609_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24234001..24234299 | rna-TanjilR_30609_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24234001..24234299 | Lupinus angustifolius | exon |
| rna-TanjilR_30609_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24233665..24233779 | rna-TanjilR_30609_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24233665..24233779 | Lupinus angustifolius | exon |
| rna-TanjilR_30609_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24231542..24231718 | rna-TanjilR_30609_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24231542..24231718 | Lupinus angustifolius | exon |
Homology
BLAST of rna-TanjilR_30609 vs. DB:Swiss
Match: NRPE1_ARATH (DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPE1 PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 5.833e-10 Identity = 31/61 (50.82%), Postives = 38/61 (62.30%), Query Frame = 2
Query: 2573 FL*VDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREYIRYKYPTHADRFIREYFKRGSGSG 2755
F+ VD+H F SRC FVV TDG DFSY+K L Y+ KYP A+ FI +YF + SG
Sbjct: 1794 FITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTKPRPSG 1854
BLAST of rna-TanjilR_30609 vs. DB:Swiss
Match: DCL_SOLLC (Protein DCL, chloroplastic OS=Solanum lycopersicum OX=4081 GN=DCL PE=2 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 1.484e-9 Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 2
Query: 2591 HPQFRHSRCLFVVRTDGGWIDFSYQKCLREYIRYKYPTHADRFIREYFKR 2740
HP F +SRCLF+VR DG +DFSY KC++ IR YP +AD FI +F++
Sbjct: 170 HPDFENSRCLFIVRKDGETVDFSYWKCIKGLIRKNYPLYADSFILRHFRK 219
BLAST of rna-TanjilR_30609 vs. DB:Swiss
Match: DCL_ARATH (Protein DCL homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DCL PE=2 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 1.870e-9 Identity = 27/53 (50.94%), Postives = 37/53 (69.81%), Query Frame = 2
Query: 2582 VDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREYIRYKYPTHADRFIREYFKR 2740
V HP F SRC+F+VR DG +DFSY KC++ I+ KYP +AD FI +F++
Sbjct: 162 VGHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRK 214
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | PFAM | PF11523 | DUF3223 | coord: 93..169
e-value: 4.6E-27
score: 94.7 |
| None | No IPR available | GENE3D | 3.10.450.40 | | coord: 88..176
e-value: 4.6E-23
score: 83.3 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_30609_La_Tanjil_v1.0 ID=rna-TanjilR_30609_La_Tanjil_v1.0; Name=rna-TanjilR_30609; organism=Lupinus angustifolius; type=mRNA; length=2758bp
ATGGCTACTCCTCTTTTTCTGAGACAATTTTTGCATCTTCGTGTTCACGT
GTATAACTACAAACGGTTTACTTTCAGAGACGTTGCGCCGCCTCACCGAC
TATGGTGCAGCGCCGCCACCAACCAACCGTTGAATGAAGATGAAGACAAA
GTAAGTAACTTTGTAAGAGCCAAGGAGATGTCAAATTACACGCCGTGGGA
TGACCCAGATTATAGGACATGGAAGGATAAAGAAAGGGAAATCCTCAGTG
ACATTGAACCTATCATTTTACTAACCAAAGATATTCTCCATTCCAGAAGG
TACTGTTGTAATGAAGCATTATTGTAATGAAGTATTCCTAACTTAAGTAA
CTAATCTCTTTCCGAGTATATGACTGTCAGTTCCAATCAATGTCATTCAC
AAGAATCGAATCTTTAATTACACCATCGGACGATACCTTGTTGGTGCATT
ATTGGAAGATATGGATACTATGAAATGATTATATTCTTTTTTTATGTATT
GTTATTAATTTTTGAAGCAGGTACTTGGATGGAGAGCAACTTAGTGTGGA
GGATGAGAAAGTTGTAGTAGAGAGGCTCCTTGCTTATCATCCACAAACTC
AAGATAAGATTGGTTCTGGTCTTGATTCCATTATGGTAGGTAACCCCAAA
TGCATCTCAATAATACATCATTTGCCTTTATTTTCTAAAGTTCTAAACTT
TGCTTCATGATAACAAATTAACAATTGTGGCTGCAATATTCCAATTTTGG
TCGCACCACTTGTATTTGTATTTATTATGGTATCAATGATTATTTCATAG
AAGTTAGAAGAATGTGAAGCATGTAATTGTTCTGAAAATATCCAGAACCA
ATTTTACTGCCTCAAGTACTAGGGTTCTGTATAAATAGACAACACATAGG
TGCATGTTTGTAAGAAGTGAGTAAGTATTAGAAAGTGAGAAGCTCCAAGT
GTAAGTGAGACTAAGAGAGAAAAATATAAAGCTCTGTTTTCTACTGTATT
TTCATATAGTTTCAAATTTCAGTCCATAACTGGATTGTAATTGTAATTTC
AGTCCATATTTGCCATAGTTTTCCACATTTGTATTAAACCTAACATAACC
GCCACTGAAATTTATATTTATTTGGTTGCTTAATCAGAACGTATTTGTAT
TAGTTTCCTAACTTACCAACAAACTGGTTGTAAAGGAAAATCTAGTTTTG
TTGAATTAGATGCTGCTCATACTTCATATTATTTCTGTCTTTTATATTGT
AACTTTGAGCCCAATGGTTTTTTGTCTGGGTCTAACTTGATTGTAACTGG
AAATGCCATCATTCGCCATCCCATGTCTCCCAAATTTCTCTTATTACCCT
CACATACATCAAATGAACCTTCCATCCACATACAAAAATGGCATATTCAT
GGCTCATTAATTCTTAACATAGCTTGTGCTACTTTGTTCCACTTAAGAGG
TCAGTTTGTTTCTGAGGACTGTCATCACTAGGCCAAATTTCATTACCCAA
TTATGCAAAAATACTAGTTGGCTTCATGTATCACAATACAATTCTGTATT
CTTAAATAGATATACAATATATGTCTTTCCAACAAATCTTCAACAGCAAG
TAATGTTAGAGAAATATTTGGGTTGAGTCAGTTGAATGGAGTAGCCCAAT
AGATATTTAAATCATTCTCTAGACAATGAGATAGACGATGTGGGACTTAC
TTTCCAACAATGTTGTCATAATAATTTTCTAATTGGTCCAATTAATCCGG
CTTGTGCATGACTGTCTTTGATTGATTTGGCAGTTGGCCTTGTGCAATGC
CATTTCTATTTAAGCAGAGTAATTAAAAAGAGTTGCACATAATCAAATTT
GTTTTCTCATCAGCAAAAAGCAAGGGTATTTCGTGTCAGCAAATTCAATT
TTGGGCTATCATGAAACTGACAAAGGGCTTAATTGCATCAGTATTAGAAC
TATGAGGATAACTGTATACTGTATAGCAACAAAAAACGATGAAAACTGAA
CTTTAGTATAACCTGAAAGAACAAAAGTGTAATTAAGCCTAAATGTTGAA
ACTTACAAACTGATCTCATACTTATTATGCATTGTCCAGTCAGAATTATG
CTTCCTAAAGTGTTAAGAATTGCATTGTTTATCACCAGTTCCCCAATGTT
AACAAATTTTGAATGAGCATTCATATTCCTTCAATGTCTACTTTACCAGC
TCAATTAGATAAAATGTCTCTGCATATTGCGCTGATCATAGATACATCAG
GGGTAGAAAAGTATTCAGAGCTGAAACCTTATGAATTTGTATTTACTCTT
ACTTAAAAGATATAATTTTAATCTTTAATGCCATAGTTGGCTTGTCGATC
ACAATTTATTGATCAAATCATGTTTGTCGTGTTTCTCGTGCATTGTTTCT
TTAATCGTAGACATTTTTTGTTTTTCCCATACATTCTCTGTTTTAGTAAA
ATTTGCACTGACTCGGTTGAGTCTGTCGAACTTAGATTCTTATAATTTGC
TTGTCAATGACCTGCTCTGGTTCTTTTCCTTAGTAGGCCTCAAGTGCAGG
ATATGGATTTGTGACTTGTATTTTCTTGTAGGTTGATCGTCATCCCCAAT
TTCGACACTCAAGGTGTCTTTTTGTGGTAAGAACTGATGGCGGCTGGATC
GATTTCTCCTATCAGAAGTGCCTTCGGGAATACATCAGATATAAGTACCC
AACTCACGCAGACAGGTTCATTCGAGAATATTTTAAGCGTGGGAGTGGGA
GCGGTTGA back to topprotein sequence of rna-TanjilR_30609_La_Tanjil_v1.0 >rna-TanjilR_30609_La_Tanjil_v1.0 ID=rna-TanjilR_30609_La_Tanjil_v1.0; Name=rna-TanjilR_30609_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=196bp
MATPLFLRQFLHLRVHVYNYKRFTFRDVAPPHRLWCSAATNQPLNEDEDK
VSNFVRAKEMSNYTPWDDPDYRTWKDKEREILSDIEPIILLTKDILHSRR
YLDGEQLSVEDEKVVVERLLAYHPQTQDKIGSGLDSIMVDRHPQFRHSRC
LFVVRTDGGWIDFSYQKCLREYIRYKYPTHADRFIREYFKRGSGSG back to topmRNA from alignment at Chr_LG03-CM007363.1:24231542..24234299- Legend: polypeptideCDSexonmRNA Hold the cursor over a type above to highlight its positions in the sequence below. >rna-TanjilR_30609_La_Tanjil_v1.0 ID=rna-TanjilR_30609_La_Tanjil_v1.0; Name=rna-TanjilR_30609; organism=Lupinus angustifolius; type=mRNA; length=2758bp; location=Sequence derived from: Chr_LG03-CM007363.1:24231542..24234299- (Lupinus angustifolius
ATGGCTACTCCTCTTTTTCTGAGACAATTTTTGCATCTTCGTGTTCACGT
GTATAACTACAAACGGTTTACTTTCAGAGACGTTGCGCCGCCTCACCGAC
TATGGTGCAGCGCCGCCACCAACCAACCGTTGAATGAAGATGAAGACAAA
GTAAGTAACTTTGTAAGAGCCAAGGAGATGTCAAATTACACGCCGTGGGA
TGACCCAGATTATAGGACATGGAAGGATAAAGAAAGGGAAATCCTCAGTG
ACATTGAACCTATCATTTTACTAACCAAAGATATTCTCCATTCCAGAAGG
TACTGTTGTAATGAAGCATTATTGTAATGAAGTATTCCTAACTTAAGTAA
CTAATCTCTTTCCGAGTATATGACTGTCAGTTCCAATCAATGTCATTCAC
AAGAATCGAATCTTTAATTACACCATCGGACGATACCTTGTTGGTGCATT
ATTGGAAGATATGGATACTATGAAATGATTATATTCTTTTTTTATGTATT
GTTATTAATTTTTGAAGCAGGTACTTGGATGGAGAGCAACTTAGTGTGGA
GGATGAGAAAGTTGTAGTAGAGAGGCTCCTTGCTTATCATCCACAAACTC
AAGATAAGATTGGTTCTGGTCTTGATTCCATTATGGTAGGTAACCCCAAA
TGCATCTCAATAATACATCATTTGCCTTTATTTTCTAAAGTTCTAAACTT
TGCTTCATGATAACAAATTAACAATTGTGGCTGCAATATTCCAATTTTGG
TCGCACCACTTGTATTTGTATTTATTATGGTATCAATGATTATTTCATAG
AAGTTAGAAGAATGTGAAGCATGTAATTGTTCTGAAAATATCCAGAACCA
ATTTTACTGCCTCAAGTACTAGGGTTCTGTATAAATAGACAACACATAGG
TGCATGTTTGTAAGAAGTGAGTAAGTATTAGAAAGTGAGAAGCTCCAAGT
GTAAGTGAGACTAAGAGAGAAAAATATAAAGCTCTGTTTTCTACTGTATT
TTCATATAGTTTCAAATTTCAGTCCATAACTGGATTGTAATTGTAATTTC
AGTCCATATTTGCCATAGTTTTCCACATTTGTATTAAACCTAACATAACC
GCCACTGAAATTTATATTTATTTGGTTGCTTAATCAGAACGTATTTGTAT
TAGTTTCCTAACTTACCAACAAACTGGTTGTAAAGGAAAATCTAGTTTTG
TTGAATTAGATGCTGCTCATACTTCATATTATTTCTGTCTTTTATATTGT
AACTTTGAGCCCAATGGTTTTTTGTCTGGGTCTAACTTGATTGTAACTGG
AAATGCCATCATTCGCCATCCCATGTCTCCCAAATTTCTCTTATTACCCT
CACATACATCAAATGAACCTTCCATCCACATACAAAAATGGCATATTCAT
GGCTCATTAATTCTTAACATAGCTTGTGCTACTTTGTTCCACTTAAGAGG
TCAGTTTGTTTCTGAGGACTGTCATCACTAGGCCAAATTTCATTACCCAA
TTATGCAAAAATACTAGTTGGCTTCATGTATCACAATACAATTCTGTATT
CTTAAATAGATATACAATATATGTCTTTCCAACAAATCTTCAACAGCAAG
TAATGTTAGAGAAATATTTGGGTTGAGTCAGTTGAATGGAGTAGCCCAAT
AGATATTTAAATCATTCTCTAGACAATGAGATAGACGATGTGGGACTTAC
TTTCCAACAATGTTGTCATAATAATTTTCTAATTGGTCCAATTAATCCGG
CTTGTGCATGACTGTCTTTGATTGATTTGGCAGTTGGCCTTGTGCAATGC
CATTTCTATTTAAGCAGAGTAATTAAAAAGAGTTGCACATAATCAAATTT
GTTTTCTCATCAGCAAAAAGCAAGGGTATTTCGTGTCAGCAAATTCAATT
TTGGGCTATCATGAAACTGACAAAGGGCTTAATTGCATCAGTATTAGAAC
TATGAGGATAACTGTATACTGTATAGCAACAAAAAACGATGAAAACTGAA
CTTTAGTATAACCTGAAAGAACAAAAGTGTAATTAAGCCTAAATGTTGAA
ACTTACAAACTGATCTCATACTTATTATGCATTGTCCAGTCAGAATTATG
CTTCCTAAAGTGTTAAGAATTGCATTGTTTATCACCAGTTCCCCAATGTT
AACAAATTTTGAATGAGCATTCATATTCCTTCAATGTCTACTTTACCAGC
TCAATTAGATAAAATGTCTCTGCATATTGCGCTGATCATAGATACATCAG
GGGTAGAAAAGTATTCAGAGCTGAAACCTTATGAATTTGTATTTACTCTT
ACTTAAAAGATATAATTTTAATCTTTAATGCCATAGTTGGCTTGTCGATC
ACAATTTATTGATCAAATCATGTTTGTCGTGTTTCTCGTGCATTGTTTCT
TTAATCGTAGACATTTTTTGTTTTTCCCATACATTCTCTGTTTTAGTAAA
ATTTGCACTGACTCGGTTGAGTCTGTCGAACTTAGATTCTTATAATTTGC
TTGTCAATGACCTGCTCTGGTTCTTTTCCTTAGTAGGCCTCAAGTGCAGG
ATATGGATTTGTGACTTGTATTTTCTTGTAGGTTGATCGTCATCCCCAAT
TTCGACACTCAAGGTGTCTTTTTGTGGTAAGAACTGATGGCGGCTGGATC
GATTTCTCCTATCAGAAGTGCCTTCGGGAATACATCAGATATAAGTACCC
AACTCACGCAGACAGGTTCATTCGAGAATATTTTAAGCGTGGGAGTGGGA
GCGGTTGA back to topCoding sequence (CDS) from alignment at Chr_LG03-CM007363.1:24231542..24234299- >rna-TanjilR_30609_La_Tanjil_v1.0 ID=rna-TanjilR_30609_La_Tanjil_v1.0; Name=rna-TanjilR_30609; organism=Lupinus angustifolius; type=CDS; length=591bp; location=Sequence derived from: Chr_LG03-CM007363.1:24231542..24234299- (Lupinus angustifolius
ATGGCTACTCCTCTTTTTCTGAGACAATTTTTGCATCTTCGTGTTCACGT
GTATAACTACAAACGGTTTACTTTCAGAGACGTTGCGCCGCCTCACCGAC
TATGGTGCAGCGCCGCCACCAACCAACCGTTGAATGAAGATGAAGACAAA
GTAAGTAACTTTGTAAGAGCCAAGGAGATGTCAAATTACACGCCGTGGGA
TGACCCAGATTATAGGACATGGAAGGATAAAGAAAGGGAAATCCTCAGTG
ACATTGAACCTATCATTTTACTAACCAAAGATATTCTCCATTCCAGAAGG
TACTTGGATGGAGAGCAACTTAGTGTGGAGGATGAGAAAGTTGTAGTAGA
GAGGCTCCTTGCTTATCATCCACAAACTCAAGATAAGATTGGTTCTGGTC
TTGATTCCATTATGGTTGATCGTCATCCCCAATTTCGACACTCAAGGTGT
CTTTTTGTGGTAAGAACTGATGGCGGCTGGATCGATTTCTCCTATCAGAA
GTGCCTTCGGGAATACATCAGATATAAGTACCCAACTCACGCAGACAGGT
TCATTCGAGAATATTTTAAGCGTGGGAGTGGGAGCGGTTGA back to top
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