rna-TanjilR_30604
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_30604 vs. DB:Swiss
Match: RAP21_ARATH (Ethylene-responsive transcription factor RAP2-1 OS=Arabidopsis thaliana OX=3702 GN=RAP2-1 PE=2 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 5.364e-49 Identity = 82/121 (67.77%), Postives = 92/121 (76.03%), Query Frame = 1 Query: 112 KPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPDLLFQDQNDNVLVQQGDMSTDSIRKKATQVGARVDXXXXXXXXXXXXXXIKYEKPDLNEYPK 474
KPYRGIR RKWGKWVAEIREPNKRSR+WLGSYTT IAAARAYD AVFYLRGPSARLNFPDLL Q+++ DM IR+KA +VGARVDALL A+ A + KPDLN+ P+
Sbjct: 29 KPYRGIRRRKWGKWVAEIREPNKRSRLWLGSYTTDIAAARAYDVAVFYLRGPSARLNFPDLLLQEEDHLSAATTADMPAALIREKAAEVGARVDALLASAAPSMAHSTPPVIKPDLNQIPE 149
BLAST of rna-TanjilR_30604 vs. DB:Swiss
Match: ERF08_ARATH (Ethylene-responsive transcription factor ERF008 OS=Arabidopsis thaliana OX=3702 GN=ERF008 PE=2 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 4.777e-44 Identity = 71/94 (75.53%), Postives = 78/94 (82.98%), Query Frame = 1 Query: 112 KPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPDLLFQDQNDNVLVQQGDMSTDSIRKKATQVGARVD 393
KPY+GIRMRKWGKWVAEIREPNKRSRIWLGSY TP AAARAYDTAVFYLRGPSARLNFP+LL N + GD+S IR+KA +VGA+VD
Sbjct: 26 KPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYATPEAAARAYDTAVFYLRGPSARLNFPELLAGLTVSNGGGRGGDLSAAYIRRKAAEVGAQVD 119
BLAST of rna-TanjilR_30604 vs. DB:Swiss
Match: ERF10_ARATH (Ethylene-responsive transcription factor ERF010 OS=Arabidopsis thaliana OX=3702 GN=ERF010 PE=2 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 7.133e-44 Identity = 72/100 (72.00%), Postives = 83/100 (83.00%), Query Frame = 1 Query: 106 QDKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPDLL----FQDQNDNVLVQQGDMSTDSIRKKATQVGARVD 393
+D+PY+GIRMRKWGKWVAEIREPNKRSR+WLGSY+TP AAARAYDTAVFYLRGP+ARLNFP+LL F D+ DMS +IRKKAT+VGA+VD
Sbjct: 17 RDRPYKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTARLNFPELLPGEKFSDE---------DMSAATIRKKATEVGAQVD 107
BLAST of rna-TanjilR_30604 vs. DB:Swiss
Match: RAP29_ARATH (Ethylene-responsive transcription factor RAP2-9 OS=Arabidopsis thaliana OX=3702 GN=RAP2-9 PE=2 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 4.318e-43 Identity = 71/98 (72.45%), Postives = 79/98 (80.61%), Query Frame = 1 Query: 100 QHQDKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPDLLFQDQNDNVLVQQGDMSTDSIRKKATQVGARVD 393
+K Y+GIRMRKWGKWVAEIREPNKRSRIWLGSY T +AAARAYDTAVFYLRGPSARLNFP+ +F+D N + DMS IRKKA +VGARVD
Sbjct: 30 SSNEKRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYKTAVAAARAYDTAVFYLRGPSARLNFPEEVFKDGNGGEGLGG-DMSPTLIRKKAAEVGARVD 126
BLAST of rna-TanjilR_30604 vs. DB:Swiss
Match: RA210_ARATH (Ethylene-responsive transcription factor RAP2-10 OS=Arabidopsis thaliana OX=3702 GN=RAP2-10 PE=2 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.887e-42 Identity = 72/100 (72.00%), Postives = 80/100 (80.00%), Query Frame = 1 Query: 106 QDKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPDLL----FQDQNDNVLVQQGDMSTDSIRKKATQVGARVD 393
+DKPY+GIRMRKWGKWVAEIREPNKRSRIWLGSY+TP AAARAYDTAVFYLRGPSARLNFP+LL + GDMS IR+KA +VGA+VD
Sbjct: 26 RDKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPEAAARAYDTAVFYLRGPSARLNFPELLAGVTVTGGGGGGVNGGGDMSAAYIRRKAAEVGAQVD 125
BLAST of rna-TanjilR_30604 vs. DB:Swiss
Match: ERF11_ARATH (Ethylene-responsive transcription factor ERF011 OS=Arabidopsis thaliana OX=3702 GN=ERF011 PE=2 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 2.646e-42 Identity = 68/99 (68.69%), Postives = 80/99 (80.81%), Query Frame = 1 Query: 97 KQHQDKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPDLLFQDQNDNVLVQQGDMSTDSIRKKATQVGARVD 393
K +++P++GIRMRKWGKWVAEIREPNKRSR+WLGSY+TP AAARAYDTAVFYLRGP+A LNFP+LL DMS +IRKKAT+VGA+VD
Sbjct: 14 KMKRERPFKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTATLNFPELL-------PCTSAEDMSAATIRKKATEVGAQVD 105
BLAST of rna-TanjilR_30604 vs. DB:Swiss
Match: ERF21_ARATH (Ethylene-responsive transcription factor ERF021 OS=Arabidopsis thaliana OX=3702 GN=ERF021 PE=2 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 5.275e-25 Identity = 47/81 (58.02%), Postives = 57/81 (70.37%), Query Frame = 1 Query: 118 YRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPDLLFQDQNDNVLVQQGDMSTDSIR 360
YRG+R RKWGKWV+EIREP ++RIWLGS+ TP AA AYD A F+ RG ARLNFP+L + L + D S+DSIR
Sbjct: 24 YRGVRKRKWGKWVSEIREPGTKNRIWLGSFETPEMAATAYDVAAFHFRGREARLNFPELA------SSLPRPADSSSDSIR 98
BLAST of rna-TanjilR_30604 vs. DB:Swiss
Match: ERF12_ARATH (Ethylene-responsive transcription factor ERF012 OS=Arabidopsis thaliana OX=3702 GN=ERF012 PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 4.328e-24 Identity = 48/94 (51.06%), Postives = 62/94 (65.96%), Query Frame = 1 Query: 118 YRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFP------DLLFQDQNDNVLVQQGDMSTDSIRKKATQVG 381
Y+G+RMR WG WV+EIR PN+++RIWLGSY+T AAARAYD A+ L+GP A LNFP LL DN+L + +S SI++ A Q
Sbjct: 50 YKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDVALLCLKGPQANLNFPTSSSSHHLL-----DNLLDENTLLSPKSIQRVAAQAA 138
BLAST of rna-TanjilR_30604 vs. DB:Swiss
Match: ERF39_ARATH (Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana OX=3702 GN=ERF039 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 2.671e-23 Identity = 38/62 (61.29%), Postives = 51/62 (82.26%), Query Frame = 1 Query: 118 YRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPDLLFQ 303
+RG+RMR+WGKWV+EIREP K+SRIWLG+++TP AARA+D A ++G SA LNFP+L +
Sbjct: 40 FRGVRMRQWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALAIKGGSAHLNFPELAYH 101
BLAST of rna-TanjilR_30604 vs. DB:Swiss
Match: ERF17_ARATH (Ethylene-responsive transcription factor ERF017 OS=Arabidopsis thaliana OX=3702 GN=ERF017 PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 1.267e-22 Identity = 48/98 (48.98%), Postives = 61/98 (62.24%), Query Frame = 1 Query: 85 EKRKKQHQDKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPDLLFQDQNDNVLVQQGDMSTDSIRKKATQV 378
E Q K Y+G+R RKWGKWV+EIR PN R RIWLGSY TP AARA+D A++ LRG +A+ NFPD N V+ ++S IR+ A +
Sbjct: 2 EGSSSSMQSK-YKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPEKAARAFDAALYCLRGNNAKFNFPD------NPPVISGGRNLSRSEIREAAARF 92 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_30604 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_30604_La_Tanjil_v1.0 ID=rna-TanjilR_30604_La_Tanjil_v1.0; Name=rna-TanjilR_30604; organism=Lupinus angustifolius; type=mRNA; length=510bpback to top protein sequence of rna-TanjilR_30604_La_Tanjil_v1.0 >rna-TanjilR_30604_La_Tanjil_v1.0 ID=rna-TanjilR_30604_La_Tanjil_v1.0; Name=rna-TanjilR_30604_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=169bpback to top mRNA from alignment at Chr_LG03-CM007363.1:24276843..24277352+ Legend: mRNApolypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_30604_La_Tanjil_v1.0 ID=rna-TanjilR_30604_La_Tanjil_v1.0; Name=rna-TanjilR_30604; organism=Lupinus angustifolius; type=mRNA; length=510bp; location=Sequence derived from: Chr_LG03-CM007363.1:24276843..24277352+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG03-CM007363.1:24276843..24277352+ >rna-TanjilR_30604_La_Tanjil_v1.0 ID=rna-TanjilR_30604_La_Tanjil_v1.0; Name=rna-TanjilR_30604; organism=Lupinus angustifolius; type=CDS; length=510bp; location=Sequence derived from: Chr_LG03-CM007363.1:24276843..24277352+ (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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