rna-TanjilR_30590
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_30590 vs. DB:Swiss
Match: HSFB4_ARATH (Heat stress transcription factor B-4 OS=Arabidopsis thaliana OX=3702 GN=HSFB4 PE=2 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 1.613e-46 Identity = 143/285 (50.18%), Postives = 165/285 (57.89%), Query Frame = 1 Query: 469 GFRKIVPDRWEFANELFKKGEKHLLCEIHRRKTAQ--PQQVS--TTHHHD-SSLGINVPSFFPFTSRVSISPPYDSDEQPNWC-DSPPPTSLINVGAANYNSSVTAXXXXXXXXXXXXXXXXXXXAHMKKLYNDIIYFVQNHVKHVAPSNTYS-PSSFLPCNAPXXXXXXXXXXXXRPMNQLLGYYSTTTNPKQSFXXXXXXXXXXXXHTLNSPINTSRGSVTVVEG------HSSNTSKTKLFGVFL-QSKKRVHPEYGSNFINSETNKTRLVLEKDDLGLNLM 1281 GFRKIVPDRWEFANE FK+GEKHLLCEIHRRKT+Q PQQ S +HHH + + SFFP +P +E WC DSPP + + + VTALSEDNERLRR+N +LMSELAHMKKLYNDIIYFVQNHVK VAPSN S SSFL QQ L YY+T T + LNS TS+ S+TV+E SN KTKLFGV L SKKR H + +T+KTRLVL++ DL LNLM Sbjct: 94 GFRKIVPDRWEFANEFFKRGEKHLLCEIHRRKTSQMIPQQHSPFMSHHHAPPQIPFSGGSFFPLPPPRVTTP----EEDHYWCDDSPPSRPRVIPQQIDTAAQVTALSEDNERLRRSNTVLMSELAHMKKLYNDIIYFVQNHVKPVAPSNNSSYLSSFLQKQQQQQPPT-------------LDYYNTAT------------VNATNLNALNSSPPTSQSSITVLEDDHTNHHDQSNMRKTKLFGVSLPSSKKRSH------HFSDQTSKTRLVLDQSDLALNLM 343 HSP 2 Score: 136.732 bits (343), Expect = 3.537e-35 Identity = 67/93 (72.04%), Postives = 75/93 (80.65%), Query Frame = 1 Query: 1 MALLLDNNC--------ESILFPLDS-NKTVPAPFLTKTYQLVDDPATDHIVSWGQDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTY 252 MA++++N+ E I ++ K VPAPFLTKTYQLVDDPATDH+VSWG DDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTY Sbjct: 1 MAMMVENSYGGYGGGGGERIQLMVEGQGKAVPAPFLTKTYQLVDDPATDHVVSWGDDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTY 93
BLAST of rna-TanjilR_30590 vs. DB:Swiss
Match: HFB4B_ORYSJ (Heat stress transcription factor B-4b OS=Oryza sativa subsp. japonica OX=39947 GN=HSFB4B PE=1 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.466e-35 Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 1 Query: 58 KTVPAPFLTKTYQLVDDPATDHIVSWGQDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTY 252 K VPAPFLTKTYQLVDDP TDHIVSWG+DDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTY Sbjct: 29 KPVPAPFLTKTYQLVDDPCTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTY 93 HSP 2 Score: 79.7221 bits (195), Expect = 3.099e-15 Identity = 67/139 (48.20%), Postives = 82/139 (58.99%), Query Frame = 1 Query: 469 GFRKIVPDRWEFANELFKKGEKHLLCEIHRRKTAQPQQVSTTHHHDSSLGINVPSFFPFTSRVSISPPYDSDEQPNWCDSPPPTSLINVGAANYNSS---VTAXXXXXXXXXXXXXXXXXXXAHMKKLYNDIIYFVQNH 876 GFRKIV DRWEFANE F+KG KHLL EIHRRK++QP + PF S+ PP + + P T+ A + + ALSEDN +LRR N++L+SELAHMKKLYNDIIYF+QNH Sbjct: 94 GFRKIVADRWEFANEFFRKGAKHLLAEIHRRKSSQPPPPPMP----HQPYHHHHHLNPF----SLPPPPPAYHHHHLIQEEPATTAHCTVAGDGGEGGDFLAALSEDNRQLRRRNSLLLSELAHMKKLYNDIIYFLQNH 224
BLAST of rna-TanjilR_30590 vs. DB:Swiss
Match: HFB4D_ORYSJ (Heat stress transcription factor B-4d OS=Oryza sativa subsp. japonica OX=39947 GN=HSFB4D PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 2.691e-29 Identity = 52/59 (88.14%), Postives = 57/59 (96.61%), Query Frame = 1 Query: 76 FLTKTYQLVDDPATDHIVSWGQDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTY 252 FL+KTYQLVDDP+TD +VSWG+D+ TFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTY Sbjct: 37 FLSKTYQLVDDPSTDDVVSWGEDEATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTY 95 HSP 2 Score: 85.1149 bits (209), Expect = 3.903e-17 Identity = 68/142 (47.89%), Postives = 83/142 (58.45%), Query Frame = 1 Query: 469 GFRKIVPDRWEFANELFKKGEKHLLCEIHRRKTAQPQQVSTTH----HHDSSLGINVPSFFPFTSRVSISPPYDSDEQPNWCDSPPPTSLINVGAANYNSSVTAXXXXXXXXXXXXXXXXXXXAHMKKLYNDIIYFVQNHVK 882 GFRKIV DRWEFANE F+KG KHLL EIHRRK++ Q H L + P P + V + Q +C SP A + ALSEDN +LRR N++L+SELAHM+KLYNDIIYF+QNHV+ Sbjct: 96 GFRKIVADRWEFANEFFRKGAKHLLSEIHRRKSSSCSQPQPPPPFPMHQHYPLSLFSPPTTPRSPPVGAAAAAAYHFQEEYCSSPADY------AGGGGDLLAALSEDNRQLRRRNSLLLSELAHMRKLYNDIIYFLQNHVE 231
BLAST of rna-TanjilR_30590 vs. DB:Swiss
Match: HFB4C_ORYSJ (Heat stress transcription factor B-4c OS=Oryza sativa subsp. japonica OX=39947 GN=HSFB4C PE=2 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 5.411e-29 Identity = 56/61 (91.80%), Postives = 58/61 (95.08%), Query Frame = 1 Query: 73 PFLTKTYQLVDDPATDHIVSWGQDD-TTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTY 252 PFLTKTYQLVDDPATDHIVSWG D +TFVVWRPPEFARD+LPNYFKHNNFSSFVRQLNTY Sbjct: 24 PFLTKTYQLVDDPATDHIVSWGDDRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTY 84 HSP 2 Score: 82.4185 bits (202), Expect = 8.331e-16 Identity = 73/182 (40.11%), Postives = 91/182 (50.00%), Query Frame = 1 Query: 469 GFRKIVPDRWEFANELFKKGEKHLLCEIHRRKTA----------------------QPQQVSTTHHHD--------SSLGINVPSFFPFTSRVSISPPYDSDEQPNWCDS--PPPTSLINVGAANYNSS------------VTAXXXXXXXXXXXXXXXXXXXAHMKKLYNDIIYFVQNHVK 882 GFRK+VP+RWEFANE F+KGEK LL EIHRRKT+ P + HHH ++ GI +P FP QP+W + P T L+ +G + S L E+NERLRR+N L+ ELAHM+KLYNDIIYFVQNHV+ Sbjct: 85 GFRKVVPERWEFANEFFRKGEKQLLTEIHRRKTSSASTASPSPPPFFAPPHFPLFHHPGVAAAQHHHAFVGDDGVVAAHGIGMP--FP---------------QPHWREPNLPVATRLLALGGPAPSPSSAEAGGAGRAATAAVLMEENERLRRSNTALLQELAHMRKLYNDIIYFVQNHVR 249
BLAST of rna-TanjilR_30590 vs. DB:Swiss
Match: HFB2B_ARATH (Heat stress transcription factor B-2b OS=Arabidopsis thaliana OX=3702 GN=HSFB2B PE=2 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 5.606e-29 Identity = 51/68 (75.00%), Postives = 59/68 (86.76%), Query Frame = 1 Query: 49 DSNKTVPAPFLTKTYQLVDDPATDHIVSWGQDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTY 252 DS +++P PFLTKTYQLV+DP D ++SW +D TTF+VWRP EFARDLLP YFKHNNFSSFVRQLNTY Sbjct: 51 DSQRSIPTPFLTKTYQLVEDPVYDELISWNEDGTTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTY 118 HSP 2 Score: 60.4622 bits (145), Expect = 1.218e-8 Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 1 Query: 469 GFRKIVPDRWEFANELFKKGEKHLLCEIHRRKTAQP 576 GFRK+VPDRWEF+N+ FK+GEK LL +I RRK +QP Sbjct: 119 GFRKVVPDRWEFSNDCFKRGEKILLRDIQRRKISQP 154
BLAST of rna-TanjilR_30590 vs. DB:Swiss
Match: HFB2B_ORYSJ (Heat stress transcription factor B-2b OS=Oryza sativa subsp. japonica OX=39947 GN=HSFB2B PE=2 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 1.846e-28 Identity = 53/66 (80.30%), Postives = 57/66 (86.36%), Query Frame = 1 Query: 55 NKTVPAPFLTKTYQLVDDPATDHIVSWGQDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTY 252 +TVP PFLTKTYQLVDDPA D ++SW D +TFVVWRP EFARDLLP YFKHNNFSSFVRQLNTY Sbjct: 42 QRTVPTPFLTKTYQLVDDPAVDDVISWNDDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTY 107 HSP 2 Score: 69.3218 bits (168), Expect = 1.428e-11 Identity = 36/74 (48.65%), Postives = 46/74 (62.16%), Query Frame = 1 Query: 469 GFRKIVPDRWEFANELFKKGEKHLLCEIHRRKTAQPQQVSTTHHHDSSLGINVPSFFPFTSRVSISPPYDSDEQ 690 GFRKIVPDRWEFAN+ F++GE+ LLCEIHRRK P +TT ++ +P P T+ SP +EQ Sbjct: 108 GFRKIVPDRWEFANDCFRRGERRLLCEIHRRKVTPPAPAATTAAVAAA----IPMALPVTTTRDGSPVLSGEEQ 177
BLAST of rna-TanjilR_30590 vs. DB:Swiss
Match: HFB2C_ORYSJ (Heat stress transcription factor B-2c OS=Oryza sativa subsp. japonica OX=39947 GN=HSFB2C PE=2 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 1.065e-27 Identity = 51/69 (73.91%), Postives = 59/69 (85.51%), Query Frame = 1 Query: 46 LDSNKTVPAPFLTKTYQLVDDPATDHIVSWGQDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTY 252 L +++P PFLTKTYQLV+DPA D ++SW +D +TFVVWRP EFARDLLP YFKHNNFSSFVRQLNTY Sbjct: 29 LAGQRSLPTPFLTKTYQLVEDPAVDDVISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTY 97 HSP 2 Score: 65.855 bits (159), Expect = 2.832e-10 Identity = 26/32 (81.25%), Postives = 30/32 (93.75%), Query Frame = 1 Query: 469 GFRKIVPDRWEFANELFKKGEKHLLCEIHRRK 564 GFRKIVPDRWEFAN+ F++GEK LLC+IHRRK Sbjct: 98 GFRKIVPDRWEFANDCFRRGEKRLLCDIHRRK 129
BLAST of rna-TanjilR_30590 vs. DB:Swiss
Match: HSF24_SOLPE (Heat shock factor protein HSF24 OS=Solanum peruvianum OX=4082 GN=HSF24 PE=2 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 6.763e-27 Identity = 50/67 (74.63%), Postives = 56/67 (83.58%), Query Frame = 1 Query: 52 SNKTVPAPFLTKTYQLVDDPATDHIVSWGQDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTY 252 S +T PAPFL KTYQLVDD ATD ++SW + TTFVVW+ EFA+DLLP YFKHNNFSSFVRQLNTY Sbjct: 2 SQRTAPAPFLLKTYQLVDDAATDDVISWNEIGTTFVVWKTAEFAKDLLPKYFKHNNFSSFVRQLNTY 68 HSP 2 Score: 59.6918 bits (143), Expect = 1.294e-8 Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 1 Query: 469 GFRKIVPDRWEFANELFKKGEKHLLCEIHRRKT 567 GFRKIVPD+WEFANE FK+G+K LL I RRKT Sbjct: 69 GFRKIVPDKWEFANENFKRGQKELLTAIRRRKT 101
BLAST of rna-TanjilR_30590 vs. DB:Swiss
Match: HFB4A_ORYSJ (Putative heat stress transcription factor B-4a OS=Oryza sativa subsp. japonica OX=39947 GN=HSFB4A PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.690e-26 Identity = 52/64 (81.25%), Postives = 57/64 (89.06%), Query Frame = 1 Query: 76 FLTKTYQLVDDPATDHIVSWGQDD-----TTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTY 252 FLTKTYQLVDDPATDH+VSW DD ++FVVWRPPEFARD+LPNYFKH+NFSSFVRQLNTY Sbjct: 26 FLTKTYQLVDDPATDHVVSWEDDDGGESASSFVVWRPPEFARDILPNYFKHSNFSSFVRQLNTY 89 HSP 2 Score: 70.8626 bits (172), Expect = 4.241e-12 Identity = 28/34 (82.35%), Postives = 32/34 (94.12%), Query Frame = 1 Query: 469 GFRKIVPDRWEFANELFKKGEKHLLCEIHRRKTA 570 GFRK+VP+RWEFANE F+KGEK LLCEIHRRK+A Sbjct: 90 GFRKVVPERWEFANEFFRKGEKQLLCEIHRRKSA 123
BLAST of rna-TanjilR_30590 vs. DB:Swiss
Match: HSFB1_ARATH (Heat stress transcription factor B-1 OS=Arabidopsis thaliana OX=3702 GN=HSFB1 PE=2 SV=2) HSP 1 Score: 110.923 bits (276), Expect = 2.394e-26 Identity = 47/67 (70.15%), Postives = 58/67 (86.57%), Query Frame = 1 Query: 52 SNKTVPAPFLTKTYQLVDDPATDHIVSWGQDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTY 252 + ++VPAPFL+KTYQLVDD +TD +VSW ++ T FVVW+ EFA+DLLP YFKHNNFSSF+RQLNTY Sbjct: 7 AQRSVPAPFLSKTYQLVDDHSTDDVVSWNEEGTAFVVWKTAEFAKDLLPQYFKHNNFSSFIRQLNTY 73 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_30590 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_30590_La_Tanjil_v1.0 ID=rna-TanjilR_30590_La_Tanjil_v1.0; Name=rna-TanjilR_30590; organism=Lupinus angustifolius; type=mRNA; length=1302bpback to top protein sequence of rna-TanjilR_30590_La_Tanjil_v1.0 >rna-TanjilR_30590_La_Tanjil_v1.0 ID=rna-TanjilR_30590_La_Tanjil_v1.0; Name=rna-TanjilR_30590_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=361bpback to top mRNA from alignment at Chr_LG03-CM007363.1:24371308..24372609+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_30590_La_Tanjil_v1.0 ID=rna-TanjilR_30590_La_Tanjil_v1.0; Name=rna-TanjilR_30590; organism=Lupinus angustifolius; type=mRNA; length=1302bp; location=Sequence derived from: Chr_LG03-CM007363.1:24371308..24372609+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG03-CM007363.1:24371308..24372609+ >rna-TanjilR_30590_La_Tanjil_v1.0 ID=rna-TanjilR_30590_La_Tanjil_v1.0; Name=rna-TanjilR_30590; organism=Lupinus angustifolius; type=CDS; length=1086bp; location=Sequence derived from: Chr_LG03-CM007363.1:24371308..24372609+ (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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