rna-TanjilR_30581

Transcript Overview
Namerna-TanjilR_30581
Unique Namerna-TanjilR_30581_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length3269
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG03-CM007363.1supercontigChr_LG03-CM007363.1:24442310..24445578 +Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL093Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL270Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL294Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL367Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR526Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR0890Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0929Cicer arietinum ICC 4958 genome v2Cicer arietinum
anccR0915Cajanus cajan Asha genome v1.0Cajanus cajan
ancaR0739Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0754Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccR0988Cajanus cajan Asha genome v1.0Cajanus cajan
anccR0998Cajanus cajan Asha genome v1.0Cajanus cajan
ancaR0791Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0794Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancrR0878Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ancrR0905Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ancrR0950Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0613Pisum sativum Cameor genome v1aPisum sativum
anpsR0619Pisum sativum Cameor genome v1aPisum sativum
anpsR0651Pisum sativum Cameor genome v1aPisum sativum
anpvR0827Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0857Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0895Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0899Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0720Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0754Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0761Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0803Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0820Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0870Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0704Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR0742Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
antifR0711Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0714Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR0737Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0745Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR0750Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0759Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR0766Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0775Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvrvR0700Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR0723Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR0690Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR0709Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR0735Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0840Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0867Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0868Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0884Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0891Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR0679Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0692Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0727Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0735Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR0784Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0798Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0827Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0829Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0719Cicer arietinum
ancarR0741Cicer arietinum
ancarR0765Cicer arietinum
ancarR0767Cicer arietinum
ancarR0771Cicer arietinum
anccaR0705Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0736Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0800Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0813Vigna umbellata FF25 genome v1.0Vigna umbellata
anccaR0762Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0765Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0831Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0838Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR0762Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0793Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0816Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvstR0808Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0818Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0815Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0825Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0833Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0844Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0840Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0852Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anpvfR0869Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anvunR0719Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR0727Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR0890Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR0899Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR0935Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR0938Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
jg29272.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
jg54894.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-XM_004505139.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vigst.02G035200.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
XM_058927185.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Phvul.001G019600.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
PvulFLAVERTChr01.1000155Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vfaba.Hedin2.R1.3g225760.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vum_02G00362.1Vigna umbellata FF25 genome v1.0Vigna umbellata
LR48_mrnaVigan09g018600Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigan.03G275000.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vigan.02G042400.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vfaba.Hedin2.R1.2g164000.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vigun08g021200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Cr_09392.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Va07G069130.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-KK1_020572Cajanus cajan Asha genome v1.0Cajanus cajan
Ca_19242Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
XM_058874759.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vum_03G01935.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Psat05G0151000-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Cr_02770.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
XM_058866258.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vfaba.Tiffany.R1.2g132200.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-XM_014649074.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vigun08g021200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-KK1_019135Cajanus cajan Asha genome v1.0Cajanus cajan
evm.model.Chr09.1357Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Phvul.009G063200.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Va04G068380.3Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
LR48_mrnaVigan01g330400Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-XM_004501532.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Ca_15134.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
rna-XM_004499027.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
jg35280.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
evm.model.Chr08.523Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Ca_01529Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Psat5g044160.1Pisum sativum Cameor genome v1aPisum sativum
Vigst.03G175000.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
rna-XM_014646559.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-KK1_027300Cajanus cajan Asha genome v1.0Cajanus cajan
Psat06G0029700-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
PvulFLAVERTChr09.1000414Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Cc_v2.0_15286.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vigun09g240200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigun09g240200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-TanjilR_14666Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_30581gene-TanjilG_30581_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_30581rna-TanjilR_30581_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_30581_La_Tanjil_v1.0rna-TanjilR_30581_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_30581_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24442310..24442669rna-TanjilR_30581_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24442310..24442669Lupinus angustifoliusexon
rna-TanjilR_30581_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24443580..24444045rna-TanjilR_30581_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24443580..24444045Lupinus angustifoliusexon
rna-TanjilR_30581_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24444392..24444447rna-TanjilR_30581_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24444392..24444447Lupinus angustifoliusexon
rna-TanjilR_30581_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24444532..24444662rna-TanjilR_30581_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24444532..24444662Lupinus angustifoliusexon
rna-TanjilR_30581_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24444762..24444858rna-TanjilR_30581_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24444762..24444858Lupinus angustifoliusexon
rna-TanjilR_30581_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24445405..24445578rna-TanjilR_30581_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24445405..24445578Lupinus angustifoliusexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_30581_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24442310..24442669rna-TanjilR_30581_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24442310..24442669Lupinus angustifoliusCDS
rna-TanjilR_30581_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24443580..24444045rna-TanjilR_30581_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24443580..24444045Lupinus angustifoliusCDS
rna-TanjilR_30581_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24444392..24444447rna-TanjilR_30581_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24444392..24444447Lupinus angustifoliusCDS
rna-TanjilR_30581_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24444532..24444662rna-TanjilR_30581_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24444532..24444662Lupinus angustifoliusCDS
rna-TanjilR_30581_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24444762..24444858rna-TanjilR_30581_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24444762..24444858Lupinus angustifoliusCDS
rna-TanjilR_30581_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24445405..24445578rna-TanjilR_30581_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24445405..24445578Lupinus angustifoliusCDS


Homology
BLAST of rna-TanjilR_30581 vs. DB:Swiss
Match: RB47C_ARATH (Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana OX=3702 GN=RBP47C PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.491e-70
Identity = 116/157 (73.89%), Postives = 131/157 (83.44%), Query Frame = 2
Query: 1268 QISSIKVIRNKQTGLSEGYGFVEFYSHSTAKKVLENYAGILMPNADQLFRLNWATFSAGDKR-SDNVPHLSIFVGDLAADVTDSLLHETFSSKYPSVKAAKVVFDANNGRSKGYGFVRFGDDNERSQAMTEMNGVYCSTRPMRIGAATPRKSSGYQQ 1735
            +I S+KVIRNK  GLSEGYGFVEF SH  A KVL  + G  MPN DQ FRLNWA+FS G+KR  +N P LSIFVGDL+ DV+D+LLHETFS KYPSVKAAKVV DAN GRSKGYGFVRFGD+NER++AMTEMNGV CS+R MRIG ATPRK++GYQQ
Sbjct:  128 EIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQ 284          

HSP 2 Score: 116.701 bits (291), Expect = 3.637e-26
Identity = 61/109 (55.96%), Postives = 69/109 (63.30%), Query Frame = 3
Query: 2223 IFVGGLDPSVTAEDLRHPFSQYGEIFSVKIPVGKGCGFVQFANR*KVLAFSSLCKFIDVIVFNLKYDYY*HYEQPSRNNAEDALQKLDGTTIGKQTIRLSWGRNPANKQ 2549
            IFVGGLD SVT EDL+ PF+++GEI SVKIPVGKGCGFVQF NR                                  NAE+AL+KL+GT IGKQT+RLSWGRNPANKQ
Sbjct:  306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNR---------------------------------PNAEEALEKLNGTVIGKQTVRLSWGRNPANKQ 381          
BLAST of rna-TanjilR_30581 vs. DB:Swiss
Match: R47CP_ARATH (Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana OX=3702 GN=RBP47C' PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.389e-69
Identity = 116/157 (73.89%), Postives = 131/157 (83.44%), Query Frame = 2
Query: 1268 QISSIKVIRNKQTGLSEGYGFVEFYSHSTAKKVLENYAGILMPNADQLFRLNWATFSAGDKR-SDNVPHLSIFVGDLAADVTDSLLHETFSSKYPSVKAAKVVFDANNGRSKGYGFVRFGDDNERSQAMTEMNGVYCSTRPMRIGAATPRKSSGYQQ 1735
            +I S+KVIRNK  G SEGYGFVEF SH  A KVL+ + G  MPN DQ FRLNWA+FS G+KR  +N P LSIFVGDLA DV+D+LLHETFS KYPSVKAAKVV DAN GRSKGYGFVRFGD+NER++AMTEMNGV CS+R MRIG ATPRK++GYQQ
Sbjct:  130 EIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQ 286          

HSP 2 Score: 117.857 bits (294), Expect = 1.261e-26
Identity = 62/109 (56.88%), Postives = 69/109 (63.30%), Query Frame = 3
Query: 2223 IFVGGLDPSVTAEDLRHPFSQYGEIFSVKIPVGKGCGFVQFANR*KVLAFSSLCKFIDVIVFNLKYDYY*HYEQPSRNNAEDALQKLDGTTIGKQTIRLSWGRNPANKQ 2549
            IFVGGLD SVT EDL+ PFS++GEI SVKIPVGKGCGFVQF NR                                  NAE+AL+KL+GT IGKQT+RLSWGRNPANKQ
Sbjct:  308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNR---------------------------------PNAEEALEKLNGTVIGKQTVRLSWGRNPANKQ 383          
BLAST of rna-TanjilR_30581 vs. DB:Swiss
Match: RB47B_ARATH (Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana OX=3702 GN=RBP47B PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 3.149e-66
Identity = 107/166 (64.46%), Postives = 138/166 (83.13%), Query Frame = 2
Query: 1268 QISSIKVIRNKQTGLSEGYGFVEFYSHSTAKKVLENYAGILMPNADQLFRLNWATFSAGDKRS-DNVPHLSIFVGDLAADVTDSLLHETFSSKYPSVKAAKVVFDANNGRSKGYGFVRFGDDNERSQAMTEMNGVYCSTRPMRIGAATPRKSSGYQQGMANHMIII 1762
            ++SS+KVIRNK T  SEGYGFVEF S + A++VL+NY+G +MPN+DQ FR+NWA+FS G+KR+ +N P LS+FVGDL+ DVTD LLHETFS +YPSVK+AKVV D+N GRSKGYGFVRFGD+NERS+A+TEMNG YCS R MR+G ATP+++   QQ  ++  +I+
Sbjct:  133 EVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIANQQQHSSQAVIL 298          

HSP 2 Score: 103.99 bits (258), Expect = 5.003e-22
Identity = 56/109 (51.38%), Postives = 66/109 (60.55%), Query Frame = 3
Query: 2223 IFVGGLDPSVTAEDLRHPFSQYGEIFSVKIPVGKGCGFVQFANR*KVLAFSSLCKFIDVIVFNLKYDYY*HYEQPSRNNAEDALQKLDGTTIGKQTIRLSWGRNPANKQ 2549
            IFVGG+DP V  EDLR PFSQ+GE+ SVKIPVGKGCGFVQFA+                                 R +AEDA++ L+GT IGK T+RLSWGR+P NKQ
Sbjct:  323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFAD---------------------------------RKSAEDAIESLNGTVIGKNTVRLSWGRSP-NKQ 397          
BLAST of rna-TanjilR_30581 vs. DB:Swiss
Match: RBP47_NICPL (Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia OX=4092 GN=RBP47 PE=1 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 5.166e-65
Identity = 104/164 (63.41%), Postives = 135/164 (82.32%), Query Frame = 2
Query: 1268 QISSIKVIRNKQTGLSEGYGFVEFYSHSTAKKVLENYAGILMPNADQLFRLNWATFSAGDKRSDNVPHLSIFVGDLAADVTDSLLHETFSSKYPSVKAAKVVFDANNGRSKGYGFVRFGDDNERSQAMTEMNGVYCSTRPMRIGAATPRKSSGYQQGMANHMII 1759
            ++ S+K+IRNKQTG SE YGFVEF +H+ A+KVL++Y G +MPN +Q FRLNWA FS G+KR++     SIFVGDLA+DVTD++L +TF+S+YPS+K AKVV DAN G SKGYGFVRFGD++ERS+AMTEMNGVYCS+R MRIG ATP+K S ++Q  +  +I+
Sbjct:  109 EVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKKPSAHEQYSSQAVIL 272          

HSP 2 Score: 102.064 bits (253), Expect = 2.120e-21
Identity = 53/117 (45.30%), Postives = 70/117 (59.83%), Query Frame = 3
Query: 2223 IFVGGLDPSVTAEDLRHPFSQYGEIFSVKIPVGKGCGFVQFANR*KVLAFSSLCKFIDVIVFNLKYDYY*HYEQPSRNNAEDALQKLDGTTIGKQTIRLSWGRNPANKQVISLSHTR 2573
            IFVGGLD  VT E+LR  F+Q+GE+ SVKIP GKGCGFVQF++                                 R++A++A+QKL G  IGKQ +RLSWGR+PANKQ+ + S ++
Sbjct:  297 IFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAGKGCGFVQFSD---------------------------------RSSAQEAIQKLSGAIIGKQAVRLSWGRSPANKQMRTDSGSQ 380          

HSP 3 Score: 56.9954 bits (136), Expect = 5.965e-7
Identity = 22/33 (66.67%), Postives = 25/33 (75.76%), Query Frame = 1
Query:  262 HSSSAENKTIWIGDLHHWMDENYLHRCFASTTE 360
             SSS +NKTIWIGDL  WMDE+YLH CF+   E
Sbjct:   77 QSSSEDNKTIWIGDLQQWMDESYLHSCFSQAGE 109          
BLAST of rna-TanjilR_30581 vs. DB:Swiss
Match: RB47A_ARATH (Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana OX=3702 GN=RBP47A PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 8.822e-65
Identity = 105/166 (63.25%), Postives = 137/166 (82.53%), Query Frame = 2
Query: 1268 QISSIKVIRNKQTGLSEGYGFVEFYSHSTAKKVLENYAGILMPNADQLFRLNWATFSAGDKR-SDNVPHLSIFVGDLAADVTDSLLHETFSSKYPSVKAAKVVFDANNGRSKGYGFVRFGDDNERSQAMTEMNGVYCSTRPMRIGAATPRKSSGYQQGMANHMIII 1762
            ++SS+KVIRNKQT  SEGYGFVEF S S A++ L++++G+ MPNA+Q FRLNWA+FS G+KR S+N P LSIFVGDLA DV+D++L ETF+ +YPSVK AKVV D+N GRSKGYGFVRFGD+NERS+AMTEMNG +CS+R MR+G ATP++++ Y Q   +  + +
Sbjct:  144 EVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTL 309          

HSP 2 Score: 98.5969 bits (244), Expect = 3.411e-20
Identity = 57/114 (50.00%), Postives = 65/114 (57.02%), Query Frame = 3
Query: 2223 IFVGGLDPSVTAEDLRHPFSQYGEIFSVKIPVGKGCGFVQFANR*KVLAFSSLCKFIDVIVFNLKYDYY*HYEQPSRNNAEDALQKLDGTTIGKQTIRLSWGRNPANKQVISLS 2564
            IFVGGLD  VT EDL  PFS +GE+ SVKIPVGKGCGFVQFAN                                 R +AE+A+  L+GT IGK T+RLSWGR+P NKQ  S S
Sbjct:  329 IFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFAN---------------------------------RQSAEEAIGNLNGTVIGKNTVRLSWGRSP-NKQWRSDS 408          
BLAST of rna-TanjilR_30581 vs. DB:Swiss
Match: RBP45_NICPL (Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia OX=4092 GN=RBP45 PE=1 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 8.798e-56
Identity = 97/156 (62.18%), Postives = 119/156 (76.28%), Query Frame = 2
Query: 1268 QISSIKVIRNKQTGLSEGYGFVEFYSHSTAKKVLENYAGILMPNADQLFRLNWATFSAGDKRSDNVPHLSIFVGDLAADVTDSLLHETFSSKYPSVKAAKVVFDANNGRSKGYGFVRFGDDNERSQAMTEMNGVYCSTRPMRIGAATPRKSSGYQQ 1735
            ++ S KVIRNKQTG SEGYGF+EF SH+ A+ +L+ Y G LMPN +Q FR+NWA+  AG++R D+  H +IFVGDLAADVTD +L ETF S Y SV+ AKVV D   GRSKGYGFV+F D++E+ +AMTEMNGV CSTRPMRIG A  +K  G  Q
Sbjct:  109 ELVSAKVIRNKQTGQSEGYGFLEFRSHAAAETILQTYNGTLMPNVEQNFRMNWASLGAGERRDDSAEH-TIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVLCSTRPMRIGPAANKKPVGTPQ 263          

HSP 2 Score: 84.3445 bits (207), Expect = 9.738e-16
Identity = 48/110 (43.64%), Postives = 58/110 (52.73%), Query Frame = 3
Query: 2223 IFVGGLDPSVTAEDLRHPFSQYGEIFSVKIPVGKGCGFVQFANR*KVLAFSSLCKFIDVIVFNLKYDYY*HYEQPSRNNAEDALQKLDGTTIGKQTIRLSWGRNPANKQV 2552
            IFVGGLDP+V  E LR  FS YGE+  VKI  GK CGFVQF                                  +R +AE AL  L+GT +G Q+IRLSWGR+P++KQ 
Sbjct:  284 IFVGGLDPTVAEEHLRQVFSPYGELVHVKIVAGKRCGFVQFG---------------------------------TRASAEQALSSLNGTQLGGQSIRLSWGRSPSSKQT 360          
BLAST of rna-TanjilR_30581 vs. DB:Swiss
Match: R47BP_ARATH (Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana OX=3702 GN=RBP47B' PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 9.889e-55
Identity = 95/156 (60.90%), Postives = 117/156 (75.00%), Query Frame = 2
Query: 1268 QISSIKVIRNKQTGLSEGYGFVEFYSHSTAKKVLENYAGILMPNADQLFRLNWATFSAGDKRSDNVPHLSIFVGDLAADVTDSLLHETFSSKYPSVKAAKVVFDANNGRSKGYGFVRFGDDNERSQAMTEMNGVYCSTRPMRIGAATPRKSSGYQQ 1735
            ++ S+KVIRNK TG  EGYGF+EF SH+ A++ L+ Y G  MP  +  FRLNWA+F +G K  D  P  SIFVGDLA DVTD LL ETF   Y SV+ AKVV D + GRSKGYGFV+F +++ER++AM EMNG+YCSTRPMRI AATP+K+ G QQ
Sbjct:   49 ELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTYNGTQMPGTELTFRLNWASFGSGQK-VDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQ 203          
BLAST of rna-TanjilR_30581 vs. DB:Swiss
Match: RB45B_ARATH (Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana OX=3702 GN=RBP45B PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.218e-53
Identity = 96/151 (63.58%), Postives = 118/151 (78.15%), Query Frame = 2
Query: 1268 QISSIKVIRNKQTGLSEGYGFVEFYSHSTAKKVLENYAGILMPN-ADQLFRLNWATFSAGDKRSDNVPHLSIFVGDLAADVTDSLLHETFSSKYPSVKAAKVVFDANNGRSKGYGFVRFGDDNERSQAMTEMNGVYCSTRPMRIGAATPRK 1717
            ++ S KVIRNKQTG  EGYGF+EF SH+ A++VL+ +    +P+  DQLFRLNWA+ S+GDKR D+ P  +IFVGDLAADVTD +L ETF + YPSVK AKVV D   GR+KGYGFVRF D++E+ +AMTEMNGV CSTRPMRIG A  +K
Sbjct:   87 EMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDS-PDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKK 236          

HSP 2 Score: 84.7297 bits (208), Expect = 7.586e-16
Identity = 47/109 (43.12%), Postives = 61/109 (55.96%), Query Frame = 3
Query: 2223 IFVGGLDPSVTAEDLRHPFSQYGEIFSVKIPVGKGCGFVQFANR*KVLAFSSLCKFIDVIVFNLKYDYY*HYEQPSRNNAEDALQKLDGTTIGKQTIRLSWGRNPANKQ 2549
            +FVGGLD SVT + L++ FSQYGEI  VKIP GK CGFVQF+                                  ++ AE+AL+ L+G  +G  T+RLSWGR+P+NKQ
Sbjct:  263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSE---------------------------------KSCAEEALRMLNGVQLGGTTVRLSWGRSPSNKQ 338          
BLAST of rna-TanjilR_30581 vs. DB:Swiss
Match: RB45A_ARATH (Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana OX=3702 GN=RBP45A PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.781e-52
Identity = 95/159 (59.75%), Postives = 114/159 (71.70%), Query Frame = 2
Query: 1268 QISSIKVIRNKQTGLSEGYGFVEFYSHSTAKKVLENYAGILMPNADQLFRLNWATFSAGDKR-SDNVPHLSIFVGDLAADVTDSLLHETFSSKYPSVKAAKVVFDANNGRSKGYGFVRFGDDNERSQAMTEMNGVYCSTRPMRIGAATPRKSSGYQQGM 1741
            + +S KVIRNK TG SEGYGF+EF SHS A++VL+ Y G  MP+ +Q FRLNWA   AG+KR     P  +IFVGDLA +VTD +L +TF + Y SVK AKVV D   GRSKGYGFVRF D+NE+ +AMTEMNG YCSTRPMRIG A  + +   Q  M
Sbjct:   85 EATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNALPMQPAM 243          

HSP 2 Score: 79.337 bits (194), Expect = 4.297e-14
Identity = 47/109 (43.12%), Postives = 60/109 (55.05%), Query Frame = 3
Query: 2223 IFVGGLDPSVTAEDLRHPFSQYGEIFSVKIPVGKGCGFVQFANR*KVLAFSSLCKFIDVIVFNLKYDYY*HYEQPSRNNAEDALQKLDGTTIGKQTIRLSWGRNPANKQ 2549
            IFVGGLD +VT ++L+  F Q+GE+  VKIP GK CGFVQ+AN                                 + +AE AL  L+GT +G Q+IRLSWGR+P NKQ
Sbjct:  262 IFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYAN---------------------------------KASAEHALSVLNGTQLGGQSIRLSWGRSP-NKQ 336          
BLAST of rna-TanjilR_30581 vs. DB:Swiss
Match: RP45C_ARATH (Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana OX=3702 GN=RBP45C PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 5.621e-52
Identity = 91/159 (57.23%), Postives = 117/159 (73.58%), Query Frame = 2
Query: 1247 LLS*FCL--QISSIKVIRNKQTGLSEGYGFVEFYSHSTAKKVLENYAGILMPNADQLFRLNWATFSAGDKRSDNVPHLSIFVGDLAADVTDSLLHETFSSKYPSVKAAKVVFDANNGRSKGYGFVRFGDDNERSQAMTEMNGVYCSTRPMRIGAATPRK 1717
            L++ F L  + ++ KVIRNKQ G SEGYGF+EF +H+TA++ L+ Y G  MP+++Q FRLNWA   AG++R    P  ++FVGDLA DVTD +L ETF + Y SVK AKVV D   GRSKGYGFVRF D++E+ +AMTEMNG YCS+RPMR G A  +K
Sbjct:   96 LMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKK 254          

HSP 2 Score: 86.6557 bits (213), Expect = 2.101e-16
Identity = 49/110 (44.55%), Postives = 60/110 (54.55%), Query Frame = 3
Query: 2223 IFVGGLDPSVTAEDLRHPFSQYGEIFSVKIPVGKGCGFVQFANR*KVLAFSSLCKFIDVIVFNLKYDYY*HYEQPSRNNAEDALQKLDGTTIGKQTIRLSWGRNPANKQV 2552
            IFVG +D SVT +DL+  F Q+GE+  VKIP GK CGFVQ+ANR         C                         AE AL  L+GT +G Q+IRLSWGR+P+NKQ 
Sbjct:  280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANR--------AC-------------------------AEQALSVLNGTQLGGQSIRLSWGRSPSNKQT 356          
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_30581 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
RB47C_ARATH3.491e-7073.89Polyadenylate-binding protein RBP47C OS=Arabidopsi... [more]
R47CP_ARATH1.389e-6973.89Polyadenylate-binding protein RBP47C' OS=Arabidops... [more]
RB47B_ARATH3.149e-6664.46Polyadenylate-binding protein RBP47B OS=Arabidopsi... [more]
RBP47_NICPL5.166e-6563.41Polyadenylate-binding protein RBP47 OS=Nicotiana p... [more]
RB47A_ARATH8.822e-6563.25Polyadenylate-binding protein RBP47A OS=Arabidopsi... [more]
RBP45_NICPL8.798e-5662.18Polyadenylate-binding protein RBP45 OS=Nicotiana p... [more]
R47BP_ARATH9.889e-5560.90Polyadenylate-binding protein RBP47B' OS=Arabidops... [more]
RB45B_ARATH1.218e-5363.58Polyadenylate-binding protein RBP45B OS=Arabidopsi... [more]
RB45A_ARATH2.781e-5259.75Polyadenylate-binding protein RBP45A OS=Arabidopsi... [more]
RP45C_ARATH5.621e-5257.23Polyadenylate-binding protein RBP45C OS=Arabidopsi... [more]
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 96..171
e-value: 3.4E-11
score: 53.2
coord: 294..361
e-value: 6.6E-20
score: 82.1
coord: 189..263
e-value: 5.7E-17
score: 72.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 295..359
e-value: 1.7E-17
score: 63.0
coord: 190..255
e-value: 4.0E-14
score: 52.2
coord: 97..161
e-value: 1.3E-10
score: 41.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 293..365
score: 18.172
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 188..267
score: 16.517
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 95..175
score: 13.174
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 270..372
e-value: 4.6E-25
score: 89.7
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 188..263
e-value: 2.0E-20
score: 74.7
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 94..174
e-value: 7.7E-21
score: 76.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 265..291
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 268..291
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableCDDcd12346RRM3_NGR1_NAM8_likecoord: 292..363
e-value: 3.26619E-37
score: 128.19
NoneNo IPR availableCDDcd12345RRM2_SECp43_likecoord: 188..266
e-value: 4.66964E-45
score: 148.966
NoneNo IPR availableCDDcd12344RRM1_SECp43_likecoord: 96..176
e-value: 1.85466E-43
score: 145.098
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 171..280
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 284..395
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 70..175

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_30581_La_Tanjil_v1.0 ID=rna-TanjilR_30581_La_Tanjil_v1.0; Name=rna-TanjilR_30581; organism=Lupinus angustifolius; type=mRNA; length=3269bp
ATGCAATCCAACGGCTCTGATTCACAAGCGACGGAGCAGAATCAACAACA
ACGGCAAACGCCGCCGCAGCCGCAGCCTCAGGCAGTGGCAGTGCCACATC
ACTGGGTGCCGATGCAATACCCTGCTGCGGCGATGGTAATGCACCACCCT
ATGTTACCGGCTCAACATTACGCGGCGGCGCCACCCTCGCCCTACGTGCC
TTACCACCATCATTACCAAAACCAGGTTTCTCCGGCGCACGTGCCTCACC
ATTACAATCGTCATAGTTCAAGTGCAGAGAACAAGACCATATGGATCGGT
GATTTGCATCATTGGATGGATGAAAATTATCTCCACCGTTGTTTCGCTTC
CACCACcgaggtttttttattttctctttctgtTATATTATAATCTTTCT
TTTTCGTCTGTTATAGAACACGTTCAAACACACTGCATATATTAGTGCGT
TTTTGCTGAttgtttttttagtttgtttCACGAACGTAAAAACTGTTCTT
GTTTTTGTGTGTGCACTTTCTGCGTAGTTCAATCTAGTGTATGAGACTGT
GAGTTATCAACCTTATGAAAAGCTCAGAGTGAAGCTCTCTCTCCATGTTG
TAAACgcataattttgatttttttttatagtgaagttgtttttttaatgt
tctAAATGTGGTATAACctaagaagaagagaaagttcaaaataattatct
ttATTGACACCTTCTTTGACACTCCTACTTGTTTTACTACTTTTGATTAT
TTGTATTAGATAAAAATGTCACAACAATTAGACAAAATATTAGCATTTTA
TCATGCTTACAATATGATTCAAGAAAACTTTTAAAACATTGTTCTTCTAT
TATAATTTAaggattgattttttttaataatcttATGTTAAAATCTATAT
CTACTGTTAAGAAACTTTCAAGGAATAACTTGCATGATTGATTTAGGCTT
CTGTATCAACCTCAATAATTAGAAGGGGgttgttttttcctttttattgg
aTTAATATGTTGGAAGTAAAGACTGAATAGTTTTTGTTGAGATAAGATTG
GTCTATGCTCTTGTGACTTGGATTTGAGTGGTGAAGGTTCCAGGTAAAAT
TGTTGCTGGTACCTAGTTGAAACCAAAAGGTGACAATAACTGTTGCTATT
AAAGTTTTATGAAAAAGATAATCTAAAGTTTGAAGGCTTAACTTGTTATC
ATTCCTCTGCTTCACATTTTGTTAAAAACAGAACAACTGTTGCATCTTAC
TATCTTAATTTTGTTTGCAGATTTCTTCCATTAAGGTTATTCGCAATAAA
CAGACTGGTCTATCAGAGGGATATGGATTTGTTGAATTCTATTCACACAG
CACAGCTAAGAAGGTTCTAGAGAATTATGCTGGAATTTTGATGCCCAACG
CCGACCAACTTTTTCGCCTGAACTGGGCAACATTTAGCGCAGGGGACAAG
CGATCCGATAATGTTCCACATCTTTCGATTTTTGTAGGAGATTTAGCTGC
AGATGTCACAGATAGCTTATTGCATGAAACTTTTTCTAGTAAATATCCTT
CTGTTAAAGCTGCAAAGGTTGTTTTTGATGCCAATAATGGGCGTTCAAAG
GGTTATGGTTTCGTCCGATTCGGTGATGATAATGAGAGGTCTCAGGCTAT
GACTGAAATGAATGGTGTTTACTGTTCTACCAGGCCTATGCGCATTGGTG
CTGCAACTCCTAGGAAATCCTCTGGCTATCAACAAGGTATGGCAAATCAC
ATGATTATCATCTTCAAACTTTACTCTCTAAAGAAAATACAAGAAATGGA
TATTGTACATtccattcaaataaaatatttcaagacACTTCAGTCTAACA
TTGAACTACTTATATGAGGTCTTATGGTTAGAATGATtatttcattttga
ttattaaaaaaaggtATTTCCATGTCTTTATGAACATGTTGCTTAAAATG
ACACTTATTATTGCAAAATGGTGAGTTTTTATtgcaaaatataatatgtt
caGTTTTTTTACTACATGCTGCTTCAAGAGTCTGAAATATCTCTACTAGC
AGGGTATTGATTATGTCTGTTTCTTTATATAGTAGGACAGGGAAATAGCA
CATCAGGCCAATCTGAAGCTGATTCTACCAACACAACTGTAAATCTTTAA
TATATTTGGTAAGTTCGATTTAAATTTTTCTTAGTGATTTGACACTGTTT
TTCTATGGATTGTTAATTCTAGATATTTGTTGGAGGACTCGACCCTAGTG
TTACAGCAGAGGATCTTAGGCACCCCTTCTCTCAGTATGGTGAGATATTT
TCTGTTAAGATACCTGTTGGAAAAGGATGTGGTTTTGTACAATTTGCCAA
CAGGTAAAAAGTTTTGGCCTTTTCAAGTCTATGCAAATTCATAGATGTCA
TAGTTTTTAATCTCAAATATGATTACTACTAACATTATGAACAACCTTCC
AGAAATAATGCAGAAGATGCTTTGCAGAAGCTGGATGGAACAACCATTGG
CAAGCAAACTATTCGTCTTTCTTGGGGCCGCAATCCGGCAAATAAACAAG
TAATCTCTCTTTCACACACACGAATAACGATTTCAAAGCTAACAGATCGC
GTTTCTGGCAACAAAGTAGAGGTTTATAGCACATAGTATTTGTACTTTGT
GCAGTAAACCTGAAAGTTATTGTGCACACAAAGAAAATGGTTCTATTCAA
TGATTCACAGCAAATGAAATTTTCTAATCTGTATTTTGTGTAGGACTAGT
AACTACTCCATCTTCTAATAGCATGGCCACAACCACAAGATATAGTGATA
TACAACCAACTTTGTAAGACAAGGTTTGacaacatttttttagaaacaag
aaaaaatgtctcacattttctctttcaaGACGATATAGTCAAACTTGTTG
TACAAAATTGATTGCACACAACATTTTTGCAAAACATATATAGCACATGT
TACACTGAAAGTAGATTAAAAAGAGTAATAAAATCATTGTTTTTGTAGTC
AATTAAAATAGCTTGCATCACATTGTCTTTATGCTGTCTATCATTAAATT
GCATATGCATCATTGTATCTCACTTGGAATAAATTTATGTAACAGTTTAG
AGTGGATTTCGGTAGTCCCTGGAATGGAGCATATTATGGGGCATATTATG
GGGCCTCTATTTATGATGGTTATGGATATGCTATGTCAGCTACTCATGAC
CCAAGTATATATGCTGCTACCTATGGGACTTACCCTATTTATGGAGGCCA
ACAACAACAAGTAAGCTGA
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protein sequence of rna-TanjilR_30581_La_Tanjil_v1.0

>rna-TanjilR_30581_La_Tanjil_v1.0 ID=rna-TanjilR_30581_La_Tanjil_v1.0; Name=rna-TanjilR_30581_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=427bp
MQSNGSDSQATEQNQQQRQTPPQPQPQAVAVPHHWVPMQYPAAAMVMHHP
MLPAQHYAAAPPSPYVPYHHHYQNQVSPAHVPHHYNRHSSSAENKTIWIG
DLHHWMDENYLHRCFASTTEISSIKVIRNKQTGLSEGYGFVEFYSHSTAK
KVLENYAGILMPNADQLFRLNWATFSAGDKRSDNVPHLSIFVGDLAADVT
DSLLHETFSSKYPSVKAAKVVFDANNGRSKGYGFVRFGDDNERSQAMTEM
NGVYCSTRPMRIGAATPRKSSGYQQVGQGNSTSGQSEADSTNTTIFVGGL
DPSVTAEDLRHPFSQYGEIFSVKIPVGKGCGFVQFANRNNAEDALQKLDG
TTIGKQTIRLSWGRNPANKQFRVDFGSPWNGAYYGAYYGASIYDGYGYAM
SATHDPSIYAATYGTYPIYGGQQQQVS
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mRNA from alignment at Chr_LG03-CM007363.1:24442310..24445578+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_30581_La_Tanjil_v1.0 ID=rna-TanjilR_30581_La_Tanjil_v1.0; Name=rna-TanjilR_30581; organism=Lupinus angustifolius; type=mRNA; length=3269bp; location=Sequence derived from: Chr_LG03-CM007363.1:24442310..24445578+ (Lupinus angustifolius
ATGCAATCCAACGGCTCTGATTCACAAGCGACGGAGCAGAATCAACAACA ACGGCAAACGCCGCCGCAGCCGCAGCCTCAGGCAGTGGCAGTGCCACATC ACTGGGTGCCGATGCAATACCCTGCTGCGGCGATGGTAATGCACCACCCT ATGTTACCGGCTCAACATTACGCGGCGGCGCCACCCTCGCCCTACGTGCC TTACCACCATCATTACCAAAACCAGGTTTCTCCGGCGCACGTGCCTCACC ATTACAATCGTCATAGTTCAAGTGCAGAGAACAAGACCATATGGATCGGT GATTTGCATCATTGGATGGATGAAAATTATCTCCACCGTTGTTTCGCTTC CACCACcgaggtttttttattttctctttctgtTATATTATAATCTTTCT TTTTCGTCTGTTATAGAACACGTTCAAACACACTGCATATATTAGTGCGT TTTTGCTGAttgtttttttagtttgtttCACGAACGTAAAAACTGTTCTT GTTTTTGTGTGTGCACTTTCTGCGTAGTTCAATCTAGTGTATGAGACTGT GAGTTATCAACCTTATGAAAAGCTCAGAGTGAAGCTCTCTCTCCATGTTG TAAACgcataattttgatttttttttatagtgaagttgtttttttaatgt tctAAATGTGGTATAACctaagaagaagagaaagttcaaaataattatct ttATTGACACCTTCTTTGACACTCCTACTTGTTTTACTACTTTTGATTAT TTGTATTAGATAAAAATGTCACAACAATTAGACAAAATATTAGCATTTTA TCATGCTTACAATATGATTCAAGAAAACTTTTAAAACATTGTTCTTCTAT TATAATTTAaggattgattttttttaataatcttATGTTAAAATCTATAT CTACTGTTAAGAAACTTTCAAGGAATAACTTGCATGATTGATTTAGGCTT CTGTATCAACCTCAATAATTAGAAGGGGgttgttttttcctttttattgg aTTAATATGTTGGAAGTAAAGACTGAATAGTTTTTGTTGAGATAAGATTG GTCTATGCTCTTGTGACTTGGATTTGAGTGGTGAAGGTTCCAGGTAAAAT TGTTGCTGGTACCTAGTTGAAACCAAAAGGTGACAATAACTGTTGCTATT AAAGTTTTATGAAAAAGATAATCTAAAGTTTGAAGGCTTAACTTGTTATC ATTCCTCTGCTTCACATTTTGTTAAAAACAGAACAACTGTTGCATCTTAC TATCTTAATTTTGTTTGCAGATTTCTTCCATTAAGGTTATTCGCAATAAA CAGACTGGTCTATCAGAGGGATATGGATTTGTTGAATTCTATTCACACAG CACAGCTAAGAAGGTTCTAGAGAATTATGCTGGAATTTTGATGCCCAACG CCGACCAACTTTTTCGCCTGAACTGGGCAACATTTAGCGCAGGGGACAAG CGATCCGATAATGTTCCACATCTTTCGATTTTTGTAGGAGATTTAGCTGC AGATGTCACAGATAGCTTATTGCATGAAACTTTTTCTAGTAAATATCCTT CTGTTAAAGCTGCAAAGGTTGTTTTTGATGCCAATAATGGGCGTTCAAAG GGTTATGGTTTCGTCCGATTCGGTGATGATAATGAGAGGTCTCAGGCTAT GACTGAAATGAATGGTGTTTACTGTTCTACCAGGCCTATGCGCATTGGTG CTGCAACTCCTAGGAAATCCTCTGGCTATCAACAAGGTATGGCAAATCAC ATGATTATCATCTTCAAACTTTACTCTCTAAAGAAAATACAAGAAATGGA TATTGTACATtccattcaaataaaatatttcaagacACTTCAGTCTAACA TTGAACTACTTATATGAGGTCTTATGGTTAGAATGATtatttcattttga ttattaaaaaaaggtATTTCCATGTCTTTATGAACATGTTGCTTAAAATG ACACTTATTATTGCAAAATGGTGAGTTTTTATtgcaaaatataatatgtt caGTTTTTTTACTACATGCTGCTTCAAGAGTCTGAAATATCTCTACTAGC AGGGTATTGATTATGTCTGTTTCTTTATATAGTAGGACAGGGAAATAGCA CATCAGGCCAATCTGAAGCTGATTCTACCAACACAACTGTAAATCTTTAA TATATTTGGTAAGTTCGATTTAAATTTTTCTTAGTGATTTGACACTGTTT TTCTATGGATTGTTAATTCTAGATATTTGTTGGAGGACTCGACCCTAGTG TTACAGCAGAGGATCTTAGGCACCCCTTCTCTCAGTATGGTGAGATATTT TCTGTTAAGATACCTGTTGGAAAAGGATGTGGTTTTGTACAATTTGCCAA CAGGTAAAAAGTTTTGGCCTTTTCAAGTCTATGCAAATTCATAGATGTCA TAGTTTTTAATCTCAAATATGATTACTACTAACATTATGAACAACCTTCC AGAAATAATGCAGAAGATGCTTTGCAGAAGCTGGATGGAACAACCATTGG CAAGCAAACTATTCGTCTTTCTTGGGGCCGCAATCCGGCAAATAAACAAG TAATCTCTCTTTCACACACACGAATAACGATTTCAAAGCTAACAGATCGC GTTTCTGGCAACAAAGTAGAGGTTTATAGCACATAGTATTTGTACTTTGT GCAGTAAACCTGAAAGTTATTGTGCACACAAAGAAAATGGTTCTATTCAA TGATTCACAGCAAATGAAATTTTCTAATCTGTATTTTGTGTAGGACTAGT AACTACTCCATCTTCTAATAGCATGGCCACAACCACAAGATATAGTGATA TACAACCAACTTTGTAAGACAAGGTTTGacaacatttttttagaaacaag aaaaaatgtctcacattttctctttcaaGACGATATAGTCAAACTTGTTG TACAAAATTGATTGCACACAACATTTTTGCAAAACATATATAGCACATGT TACACTGAAAGTAGATTAAAAAGAGTAATAAAATCATTGTTTTTGTAGTC AATTAAAATAGCTTGCATCACATTGTCTTTATGCTGTCTATCATTAAATT GCATATGCATCATTGTATCTCACTTGGAATAAATTTATGTAACAGTTTAG AGTGGATTTCGGTAGTCCCTGGAATGGAGCATATTATGGGGCATATTATG GGGCCTCTATTTATGATGGTTATGGATATGCTATGTCAGCTACTCATGAC CCAAGTATATATGCTGCTACCTATGGGACTTACCCTATTTATGGAGGCCA ACAACAACAAGTAAGCTGA
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Coding sequence (CDS) from alignment at Chr_LG03-CM007363.1:24442310..24445578+

>rna-TanjilR_30581_La_Tanjil_v1.0 ID=rna-TanjilR_30581_La_Tanjil_v1.0; Name=rna-TanjilR_30581; organism=Lupinus angustifolius; type=CDS; length=1284bp; location=Sequence derived from: Chr_LG03-CM007363.1:24442310..24445578+ (Lupinus angustifolius
ATGCAATCCAACGGCTCTGATTCACAAGCGACGGAGCAGAATCAACAACA
ACGGCAAACGCCGCCGCAGCCGCAGCCTCAGGCAGTGGCAGTGCCACATC
ACTGGGTGCCGATGCAATACCCTGCTGCGGCGATGGTAATGCACCACCCT
ATGTTACCGGCTCAACATTACGCGGCGGCGCCACCCTCGCCCTACGTGCC
TTACCACCATCATTACCAAAACCAGGTTTCTCCGGCGCACGTGCCTCACC
ATTACAATCGTCATAGTTCAAGTGCAGAGAACAAGACCATATGGATCGGT
GATTTGCATCATTGGATGGATGAAAATTATCTCCACCGTTGTTTCGCTTC
CACCACcgagATTTCTTCCATTAAGGTTATTCGCAATAAACAGACTGGTC
TATCAGAGGGATATGGATTTGTTGAATTCTATTCACACAGCACAGCTAAG
AAGGTTCTAGAGAATTATGCTGGAATTTTGATGCCCAACGCCGACCAACT
TTTTCGCCTGAACTGGGCAACATTTAGCGCAGGGGACAAGCGATCCGATA
ATGTTCCACATCTTTCGATTTTTGTAGGAGATTTAGCTGCAGATGTCACA
GATAGCTTATTGCATGAAACTTTTTCTAGTAAATATCCTTCTGTTAAAGC
TGCAAAGGTTGTTTTTGATGCCAATAATGGGCGTTCAAAGGGTTATGGTT
TCGTCCGATTCGGTGATGATAATGAGAGGTCTCAGGCTATGACTGAAATG
AATGGTGTTTACTGTTCTACCAGGCCTATGCGCATTGGTGCTGCAACTCC
TAGGAAATCCTCTGGCTATCAACAAGTAGGACAGGGAAATAGCACATCAG
GCCAATCTGAAGCTGATTCTACCAACACAACTATATTTGTTGGAGGACTC
GACCCTAGTGTTACAGCAGAGGATCTTAGGCACCCCTTCTCTCAGTATGG
TGAGATATTTTCTGTTAAGATACCTGTTGGAAAAGGATGTGGTTTTGTAC
AATTTGCCAACAGAAATAATGCAGAAGATGCTTTGCAGAAGCTGGATGGA
ACAACCATTGGCAAGCAAACTATTCGTCTTTCTTGGGGCCGCAATCCGGC
AAATAAACAATTTAGAGTGGATTTCGGTAGTCCCTGGAATGGAGCATATT
ATGGGGCATATTATGGGGCCTCTATTTATGATGGTTATGGATATGCTATG
TCAGCTACTCATGACCCAAGTATATATGCTGCTACCTATGGGACTTACCC
TATTTATGGAGGCCAACAACAACAAGTAAGCTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding