rna-TanjilR_30577

Transcript Overview


Name	rna-TanjilR_30577
Unique Name	rna-TanjilR_30577_La_Tanjil_v1.0
Type	mRNA
Organism	Lupinus angustifolius (blue lupin)
Sequence length	814
Product	hypothetical protein

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr_LG03-CM007363.1	supercontig	Chr_LG03-CM007363.1:24473046..24473859 -	Lupinus angustifolius L. Tanjil genome v1.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Lupinus angustifolius L. Tanjil genome v1.0	2019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.0	2020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot	2020-01-28

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
ananL093	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananL270	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananL294	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananL367	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananR526	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancaiR0890	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ancaiR0929	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
anccR0915	Cajanus cajan Asha genome v1.0	Cajanus cajan
ancaR0739	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ancaR0754	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
anccR0992	Cajanus cajan Asha genome v1.0	Cajanus cajan
anccR0998	Cajanus cajan Asha genome v1.0	Cajanus cajan
ancaR0794	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ancrR0878	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
ancrR0905	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
ancrR0950	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
anpsR0613	Pisum sativum Cameor genome v1a	Pisum sativum
anpsR0619	Pisum sativum Cameor genome v1a	Pisum sativum
anpsR0651	Pisum sativum Cameor genome v1a	Pisum sativum
anpvR0827	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anpvR0857	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anpvR0899	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anvuR0720	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anvuR0754	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anvuR0761	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anasR0803	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anasR0820	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anasR0870	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anzwsR0704	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
anzwsR0742	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
anvrvR0700	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
anvrvR0723	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
anvuaR0690	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
anvuaR0709	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
anvuaR0735	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
anvssR0840	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
anvssR0867	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
anvssR0868	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
anvssR0891	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
ancanR0679	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
ancanR0692	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
ancanR0727	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
ancanR0735	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
anavjR0784	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
anavjR0798	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
anavjR0827	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
anavjR0829	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
ancarR0719		Cicer arietinum
ancarR0741		Cicer arietinum
ancarR0765		Cicer arietinum
ancarR0771		Cicer arietinum
anccaR0705	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anccaR0736	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anvumR0800	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvumR0813	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anccaR0765	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anvumR0831	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvumR0838	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvvaR0762	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
anvvaR0793	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
anvvaR0816	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
anvstR0808	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvasR0818	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR0815	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvasR0825	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR0833	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvasR0844	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR0840	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvasR0852	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anpvfR0869	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
anvunR0719	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
anvunR0727	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
anpvfR0890	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
anpvfR0899	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
anpvfR0938	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris

Orthologs


Gene/Transcript	Assembly	Species
jg54884.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
Vum_02G00355.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata
Vigun09g240800.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
Cc_v2.0_15278.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
Psat5g044760.1	Pisum sativum Cameor genome v1a	Pisum sativum
PvulFLAVERTChr09.489	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
rna-XM_014643896.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
jg29281.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
LR48_mrnaVigan09g019200	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
Vigan.02G041700.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
evm.model.Chr09.1351	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
rna-KK1_020562	Cajanus cajan Asha genome v1.0	Cajanus cajan
Vigst.02G034600.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
XM_058925223.1	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
Vigun09g240800.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
rna-KK1_019146	Cajanus cajan Asha genome v1.0	Cajanus cajan
Phvul.009G062600.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
Cr_02765.1	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
Ca_15141.1	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
Ca_01521	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
rna-XM_004501539.3	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
Psat05G0152500-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
XM_058877856.1	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
rna-XM_004505132.2	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
Va04G068450.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-TanjilG_30577	gene-TanjilG_30577_La_Tanjil_v1.0	Lupinus angustifolius	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_30577	rna-TanjilR_30577_La_Tanjil_v1.0-protein	Lupinus angustifolius	polypeptide
rna-TanjilR_30577_La_Tanjil_v1.0	rna-TanjilR_30577_La_Tanjil_v1.0	Lupinus angustifolius	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_30577_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24473691..24473859	rna-TanjilR_30577_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24473691..24473859	Lupinus angustifolius	CDS
rna-TanjilR_30577_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24473046..24473341	rna-TanjilR_30577_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24473046..24473341	Lupinus angustifolius	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_30577_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24473691..24473859	rna-TanjilR_30577_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24473691..24473859	Lupinus angustifolius	exon
rna-TanjilR_30577_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24473046..24473341	rna-TanjilR_30577_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24473046..24473341	Lupinus angustifolius	exon

Homology

The following BLAST results are available for this feature:

BLAST of rna-TanjilR_30577 vs.

BLAST of rna-TanjilR_30577 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0

Position :

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Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003245	Phytocyanin domain	PFAM	PF02298	Cu_bind_like	coord: 34..120 e-value: 2.0E-5 score: 24.5
IPR003245	Phytocyanin domain	PROSITE	PS51485	PHYTOCYANIN	coord: 24..138 score: 23.5
IPR008972	Cupredoxin	GENE3D	2.60.40.420		coord: 21..137 e-value: 1.6E-15 score: 59.1
IPR008972	Cupredoxin	SUPERFAMILY	49503	Cupredoxins	coord: 23..135

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Chr_LG03-CM007363.1:24473046..24473859-
coding sequence from alignment at Chr_LG03-CM007363.1:24473046..24473859-

mRNA sequence

>rna-TanjilR_30577_La_Tanjil_v1.0 ID=rna-TanjilR_30577_La_Tanjil_v1.0; Name=rna-TanjilR_30577; organism=Lupinus angustifolius; type=mRNA; length=814bp
ATGGATACTAAAGCCAAAGGAGTACTTGTGTTCCTTGTGATTGCAACTAT
GGCTTCAGGGAGGGAGAGCAAAACCATGTTGGTTGGAGACTCTGAAGGTT
GGAGTGCTGGTACCAACTATACTCAATGGGCTATTCAAAATAAACCCTTC
CACATAAATGACACACTAGGTCAGTATAAGCATGGATCCATAATTCACTA
ACTTCACAATGAGCATCACTATTATTATGGGCTTGGATCCTCCCGAGTCT
AATACTTGAGTCTAGATTCTGATATGTGACATTAAAAAAAATCTAAGGAT
ACATGTTATTTTTATTATTTTAGAGCTCGTATTATTTTTATTATTTTCGG
CTCGTATTATTTTTATTATTTCTTCCTCACATTTCAGTATTTGAGGGTTC
GAAGATGAACCATTCCCTCATATTATATATCAAGTAATTAACCATTATTA
TATTTTGGATATGTAATTTTTGGGTTGATTTACTGATGCATTATTTGTTA
TGGGACATGCACATGCAGTGTTCAAGTATCCTGCACCAGACAATTCCACA
GCACCTATGAGTGTGTATTTACTACCAAACATGTGGAGCTACACAACATG
CGAATTCAAGGAAGCAAAGCTATTAGGGAGCACTACTGAAGGGGCTGGTG
AGGGGTTTAAGGTTAAGCTCAAACAAAGGAAACCTTACTACTTTGCTTCT
GCTGAAGGAAACTCCTATGATTGCATTGCTGGACTCACCAAATTCATTGC
TGTCCCTTCTCCACGTTCCCTTACCCATAACCATTTTTCACACAAACCCT
CACTCCTCAACTAG

protein sequence of rna-TanjilR_30577_La_Tanjil_v1.0

>rna-TanjilR_30577_La_Tanjil_v1.0 ID=rna-TanjilR_30577_La_Tanjil_v1.0; Name=rna-TanjilR_30577_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=154bp
MDTKAKGVLVFLVIATMASGRESKTMLVGDSEGWSAGTNYTQWAIQNKPF
HINDTLVFKYPAPDNSTAPMSVYLLPNMWSYTTCEFKEAKLLGSTTEGAG
EGFKVKLKQRKPYYFASAEGNSYDCIAGLTKFIAVPSPRSLTHNHFSHKP
SLLN

mRNA from alignment at Chr_LG03-CM007363.1:24473046..24473859-

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna-TanjilR_30577_La_Tanjil_v1.0 ID=rna-TanjilR_30577_La_Tanjil_v1.0; Name=rna-TanjilR_30577; organism=Lupinus angustifolius; type=mRNA; length=814bp; location=Sequence derived from: Chr_LG03-CM007363.1:24473046..24473859- (Lupinus angustifolius
ATGGATACTAAAGCCAAAGGAGTACTTGTGTTCCTTGTGATTGCAACTAT
GGCTTCAGGGAGGGAGAGCAAAACCATGTTGGTTGGAGACTCTGAAGGTT
GGAGTGCTGGTACCAACTATACTCAATGGGCTATTCAAAATAAACCCTTC
CACATAAATGACACACTAGGTCAGTATAAGCATGGATCCATAATTCACTA
ACTTCACAATGAGCATCACTATTATTATGGGCTTGGATCCTCCCGAGTCT
AATACTTGAGTCTAGATTCTGATATGTGACATTAAAAAAAATCTAAGGAT
ACATGTTATTTTTATTATTTTAGAGCTCGTATTATTTTTATTATTTTCGG
CTCGTATTATTTTTATTATTTCTTCCTCACATTTCAGTATTTGAGGGTTC
GAAGATGAACCATTCCCTCATATTATATATCAAGTAATTAACCATTATTA
TATTTTGGATATGTAATTTTTGGGTTGATTTACTGATGCATTATTTGTTA
TGGGACATGCACATGCAGTGTTCAAGTATCCTGCACCAGACAATTCCACA
GCACCTATGAGTGTGTATTTACTACCAAACATGTGGAGCTACACAACATG
CGAATTCAAGGAAGCAAAGCTATTAGGGAGCACTACTGAAGGGGCTGGTG
AGGGGTTTAAGGTTAAGCTCAAACAAAGGAAACCTTACTACTTTGCTTCT
GCTGAAGGAAACTCCTATGATTGCATTGCTGGACTCACCAAATTCATTGC
TGTCCCTTCTCCACGTTCCCTTACCCATAACCATTTTTCACACAAACCCT
CACTCCTCAACTAG

Coding sequence (CDS) from alignment at Chr_LG03-CM007363.1:24473046..24473859-

>rna-TanjilR_30577_La_Tanjil_v1.0 ID=rna-TanjilR_30577_La_Tanjil_v1.0; Name=rna-TanjilR_30577; organism=Lupinus angustifolius; type=CDS; length=465bp; location=Sequence derived from: Chr_LG03-CM007363.1:24473046..24473859- (Lupinus angustifolius
ATGGATACTAAAGCCAAAGGAGTACTTGTGTTCCTTGTGATTGCAACTAT
GGCTTCAGGGAGGGAGAGCAAAACCATGTTGGTTGGAGACTCTGAAGGTT
GGAGTGCTGGTACCAACTATACTCAATGGGCTATTCAAAATAAACCCTTC
CACATAAATGACACACTAGTGTTCAAGTATCCTGCACCAGACAATTCCAC
AGCACCTATGAGTGTGTATTTACTACCAAACATGTGGAGCTACACAACAT
GCGAATTCAAGGAAGCAAAGCTATTAGGGAGCACTACTGAAGGGGCTGGT
GAGGGGTTTAAGGTTAAGCTCAAACAAAGGAAACCTTACTACTTTGCTTC
TGCTGAAGGAAACTCCTATGATTGCATTGCTGGACTCACCAAATTCATTG
CTGTCCCTTCTCCACGTTCCCTTACCCATAACCATTTTTCACACAAACCC
TCACTCCTCAACTAG

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR003245	Phytocyanin_dom
IPR008972	Cupredoxin

Vocabulary: **Molecular Function**
Term	Definition
GO:0009055	electron transfer activity

Search form

rna-TanjilR_30577