rna-TanjilR_30577

Transcript Overview
Namerna-TanjilR_30577
Unique Namerna-TanjilR_30577_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length814
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG03-CM007363.1supercontigChr_LG03-CM007363.1:24473046..24473859 -Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL093Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL270Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL294Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL367Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR526Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR0890Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0929Cicer arietinum ICC 4958 genome v2Cicer arietinum
anccR0915Cajanus cajan Asha genome v1.0Cajanus cajan
ancaR0739Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0754Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccR0992Cajanus cajan Asha genome v1.0Cajanus cajan
anccR0998Cajanus cajan Asha genome v1.0Cajanus cajan
ancaR0794Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancrR0878Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ancrR0905Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ancrR0950Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0613Pisum sativum Cameor genome v1aPisum sativum
anpsR0619Pisum sativum Cameor genome v1aPisum sativum
anpsR0651Pisum sativum Cameor genome v1aPisum sativum
anpvR0827Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0857Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0899Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0720Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0754Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0761Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0803Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0820Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0870Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0704Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR0742Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anvrvR0700Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR0723Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR0690Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR0709Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR0735Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0840Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0867Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0868Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0891Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR0679Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0692Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0727Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0735Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR0784Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0798Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0827Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0829Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0719Cicer arietinum
ancarR0741Cicer arietinum
ancarR0765Cicer arietinum
ancarR0771Cicer arietinum
anccaR0705Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0736Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0800Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0813Vigna umbellata FF25 genome v1.0Vigna umbellata
anccaR0765Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0831Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0838Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR0762Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0793Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0816Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvstR0808Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0818Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0815Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0825Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0833Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0844Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0840Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0852Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anpvfR0869Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anvunR0719Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR0727Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR0890Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR0899Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR0938Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
jg54884.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vum_02G00355.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vigun09g240800.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Cc_v2.0_15278.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Psat5g044760.1Pisum sativum Cameor genome v1aPisum sativum
PvulFLAVERTChr09.489Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
rna-XM_014643896.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
jg29281.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
LR48_mrnaVigan09g019200Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigan.02G041700.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
evm.model.Chr09.1351Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-KK1_020562Cajanus cajan Asha genome v1.0Cajanus cajan
Vigst.02G034600.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
XM_058925223.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vigun09g240800.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
rna-KK1_019146Cajanus cajan Asha genome v1.0Cajanus cajan
Phvul.009G062600.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Cr_02765.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Ca_15141.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Ca_01521Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-XM_004501539.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Psat05G0152500-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
XM_058877856.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
rna-XM_004505132.2Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Va04G068450.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_30577gene-TanjilG_30577_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_30577rna-TanjilR_30577_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_30577_La_Tanjil_v1.0rna-TanjilR_30577_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_30577_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24473691..24473859rna-TanjilR_30577_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24473691..24473859Lupinus angustifoliusCDS
rna-TanjilR_30577_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24473046..24473341rna-TanjilR_30577_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24473046..24473341Lupinus angustifoliusCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_30577_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24473691..24473859rna-TanjilR_30577_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24473691..24473859Lupinus angustifoliusexon
rna-TanjilR_30577_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24473046..24473341rna-TanjilR_30577_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24473046..24473341Lupinus angustifoliusexon


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_30577 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003245Phytocyanin domainPFAMPF02298Cu_bind_likecoord: 34..120
e-value: 2.0E-5
score: 24.5
IPR003245Phytocyanin domainPROSITEPS51485PHYTOCYANINcoord: 24..138
score: 23.5
IPR008972CupredoxinGENE3D2.60.40.420coord: 21..137
e-value: 1.6E-15
score: 59.1
IPR008972CupredoxinSUPERFAMILY49503Cupredoxinscoord: 23..135

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_30577_La_Tanjil_v1.0 ID=rna-TanjilR_30577_La_Tanjil_v1.0; Name=rna-TanjilR_30577; organism=Lupinus angustifolius; type=mRNA; length=814bp
ATGGATACTAAAGCCAAAGGAGTACTTGTGTTCCTTGTGATTGCAACTAT
GGCTTCAGGGAGGGAGAGCAAAACCATGTTGGTTGGAGACTCTGAAGGTT
GGAGTGCTGGTACCAACTATACTCAATGGGCTATTCAAAATAAACCCTTC
CACATAAATGACACACTAGGTCAGTATAAGCATGGATCCATAATTCACTA
ACTTCACAATGAGCATCACTATTATTATGGGCTTGGATCCTCCCGAGTCT
AATACTTGAGTCTAGATTCTGATATGTGACATTAAAAAAAATCTAAGGAT
ACATGTTATTTTTATTATTTTAGAGCTCGTATTATTTTTATTATTTTCGG
CTCGTATTATTTTTATTATTTCTTCCTCACATTTCAGTATTTGAGGGTTC
GAAGATGAACCATTCCCTCATATTATATATCAAGTAATTAACCATTATTA
TATTTTGGATATGTAATTTTTGGGTTGATTTACTGATGCATTATTTGTTA
TGGGACATGCACATGCAGTGTTCAAGTATCCTGCACCAGACAATTCCACA
GCACCTATGAGTGTGTATTTACTACCAAACATGTGGAGCTACACAACATG
CGAATTCAAGGAAGCAAAGCTATTAGGGAGCACTACTGAAGGGGCTGGTG
AGGGGTTTAAGGTTAAGCTCAAACAAAGGAAACCTTACTACTTTGCTTCT
GCTGAAGGAAACTCCTATGATTGCATTGCTGGACTCACCAAATTCATTGC
TGTCCCTTCTCCACGTTCCCTTACCCATAACCATTTTTCACACAAACCCT
CACTCCTCAACTAG
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protein sequence of rna-TanjilR_30577_La_Tanjil_v1.0

>rna-TanjilR_30577_La_Tanjil_v1.0 ID=rna-TanjilR_30577_La_Tanjil_v1.0; Name=rna-TanjilR_30577_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=154bp
MDTKAKGVLVFLVIATMASGRESKTMLVGDSEGWSAGTNYTQWAIQNKPF
HINDTLVFKYPAPDNSTAPMSVYLLPNMWSYTTCEFKEAKLLGSTTEGAG
EGFKVKLKQRKPYYFASAEGNSYDCIAGLTKFIAVPSPRSLTHNHFSHKP
SLLN
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mRNA from alignment at Chr_LG03-CM007363.1:24473046..24473859-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_30577_La_Tanjil_v1.0 ID=rna-TanjilR_30577_La_Tanjil_v1.0; Name=rna-TanjilR_30577; organism=Lupinus angustifolius; type=mRNA; length=814bp; location=Sequence derived from: Chr_LG03-CM007363.1:24473046..24473859- (Lupinus angustifolius
ATGGATACTAAAGCCAAAGGAGTACTTGTGTTCCTTGTGATTGCAACTAT
GGCTTCAGGGAGGGAGAGCAAAACCATGTTGGTTGGAGACTCTGAAGGTT
GGAGTGCTGGTACCAACTATACTCAATGGGCTATTCAAAATAAACCCTTC
CACATAAATGACACACTAGGTCAGTATAAGCATGGATCCATAATTCACTA
ACTTCACAATGAGCATCACTATTATTATGGGCTTGGATCCTCCCGAGTCT
AATACTTGAGTCTAGATTCTGATATGTGACATTAAAAAAAATCTAAGGAT
ACATGTTATTTTTATTATTTTAGAGCTCGTATTATTTTTATTATTTTCGG
CTCGTATTATTTTTATTATTTCTTCCTCACATTTCAGTATTTGAGGGTTC
GAAGATGAACCATTCCCTCATATTATATATCAAGTAATTAACCATTATTA
TATTTTGGATATGTAATTTTTGGGTTGATTTACTGATGCATTATTTGTTA
TGGGACATGCACATGCAGTGTTCAAGTATCCTGCACCAGACAATTCCACA
GCACCTATGAGTGTGTATTTACTACCAAACATGTGGAGCTACACAACATG
CGAATTCAAGGAAGCAAAGCTATTAGGGAGCACTACTGAAGGGGCTGGTG
AGGGGTTTAAGGTTAAGCTCAAACAAAGGAAACCTTACTACTTTGCTTCT
GCTGAAGGAAACTCCTATGATTGCATTGCTGGACTCACCAAATTCATTGC
TGTCCCTTCTCCACGTTCCCTTACCCATAACCATTTTTCACACAAACCCT
CACTCCTCAACTAG
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Coding sequence (CDS) from alignment at Chr_LG03-CM007363.1:24473046..24473859-

>rna-TanjilR_30577_La_Tanjil_v1.0 ID=rna-TanjilR_30577_La_Tanjil_v1.0; Name=rna-TanjilR_30577; organism=Lupinus angustifolius; type=CDS; length=465bp; location=Sequence derived from: Chr_LG03-CM007363.1:24473046..24473859- (Lupinus angustifolius
ATGGATACTAAAGCCAAAGGAGTACTTGTGTTCCTTGTGATTGCAACTAT
GGCTTCAGGGAGGGAGAGCAAAACCATGTTGGTTGGAGACTCTGAAGGTT
GGAGTGCTGGTACCAACTATACTCAATGGGCTATTCAAAATAAACCCTTC
CACATAAATGACACACTAGTGTTCAAGTATCCTGCACCAGACAATTCCAC
AGCACCTATGAGTGTGTATTTACTACCAAACATGTGGAGCTACACAACAT
GCGAATTCAAGGAAGCAAAGCTATTAGGGAGCACTACTGAAGGGGCTGGT
GAGGGGTTTAAGGTTAAGCTCAAACAAAGGAAACCTTACTACTTTGCTTC
TGCTGAAGGAAACTCCTATGATTGCATTGCTGGACTCACCAAATTCATTG
CTGTCCCTTCTCCACGTTCCCTTACCCATAACCATTTTTCACACAAACCC
TCACTCCTCAACTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR003245Phytocyanin_dom
IPR008972Cupredoxin
Vocabulary: Molecular Function
TermDefinition
GO:0009055electron transfer activity