Transcript Overview
Name LR48_mrnaVigan01g250800 Unique Name LR48_mrnaVigan01g250800_Va_Jingnong6_v1.1 Type mRNA Organism Vigna angularis (Adzuki bean, red mung bean, azuki) Sequence length 2544 Product hypothetical protein
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
LR48_mrnaVigan01g250800 LR48_mrnaVigan01g250800_Va_Jingnong6_v1.1-protein Vigna angularis polypeptide LR48_mrnaVigan01g250800_Va_Jingnong6_v1.1 LR48_mrnaVigan01g250800_Va_Jingnong6_v1.1 Vigna angularis polypeptide
The following start_codon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
LR48_mrnaVigan01g250800_Va_Jingnong6_v1.1-start_codon-Chr_1-CM003371.1_Va_Jingnong6_v1.1-1589992784:33364134..33364136 LR48_mrnaVigan01g250800_Va_Jingnong6_v1.1-start_codon-Chr_1-CM003371.1_Va_Jingnong6_v1.1-1589992784:33364134..33364136 Vigna angularis start_codon
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
LR48_mrnaVigan01g250800_Va_Jingnong6_v1.1-exon-Chr_1-CM003371.1_Va_Jingnong6_v1.1-1589992784:33364134..33364457 LR48_mrnaVigan01g250800_Va_Jingnong6_v1.1-exon-Chr_1-CM003371.1_Va_Jingnong6_v1.1-1589992784:33364134..33364457 Vigna angularis exon LR48_mrnaVigan01g250800_Va_Jingnong6_v1.1-exon-Chr_1-CM003371.1_Va_Jingnong6_v1.1-1589992784:33364857..33365761 LR48_mrnaVigan01g250800_Va_Jingnong6_v1.1-exon-Chr_1-CM003371.1_Va_Jingnong6_v1.1-1589992784:33364857..33365761 Vigna angularis exon LR48_mrnaVigan01g250800_Va_Jingnong6_v1.1-exon-Chr_1-CM003371.1_Va_Jingnong6_v1.1-1589992784:33366191..33366677 LR48_mrnaVigan01g250800_Va_Jingnong6_v1.1-exon-Chr_1-CM003371.1_Va_Jingnong6_v1.1-1589992784:33366191..33366677 Vigna angularis exon
The following intron feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
LR48_mrnaVigan01g250800_Va_Jingnong6_v1.1-intron-Chr_1-CM003371.1_Va_Jingnong6_v1.1-1589992784:33364458..33364856 LR48_mrnaVigan01g250800_Va_Jingnong6_v1.1-intron-Chr_1-CM003371.1_Va_Jingnong6_v1.1-1589992784:33364458..33364856 Vigna angularis intron LR48_mrnaVigan01g250800_Va_Jingnong6_v1.1-intron-Chr_1-CM003371.1_Va_Jingnong6_v1.1-1589992784:33365762..33366190 LR48_mrnaVigan01g250800_Va_Jingnong6_v1.1-intron-Chr_1-CM003371.1_Va_Jingnong6_v1.1-1589992784:33365762..33366190 Vigna angularis intron
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
CDS25248 CDS25248_Va_Jingnong6_v1.1 Vigna angularis CDS
The following stop_codon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
LR48_mrnaVigan01g250800_Va_Jingnong6_v1.1-stop_codon-Chr_1-CM003371.1_Va_Jingnong6_v1.1-1589992784:33366675..33366677 LR48_mrnaVigan01g250800_Va_Jingnong6_v1.1-stop_codon-Chr_1-CM003371.1_Va_Jingnong6_v1.1-1589992784:33366675..33366677 Vigna angularis stop_codon
Homology
BLAST of LR48_mrnaVigan01g250800 vs. DB:Swiss
Match:
NFD4_ARATH (Protein NUCLEAR FUSION DEFECTIVE 4 OS=Arabidopsis thaliana OX=3702 GN=NFD4 PE=3 SV=1)
HSP 1 Score: 78.9518 bits (193), Expect = 4.280e-14
Identity = 57/169 (33.73%), Postives = 94/169 (55.62%), Query Frame = 1
Query: 4 LRVKGGKRPPWVGLGAAVWVQICSGNGYTFPLYSHSLKSVLGFNQSQITLLGVANDIGENLGILPGLACNKFPPXXXXXXXXXXXXXXXXXXXXAISKTFDCVPFIVLWLALAVATNSCAWLSTAILVTNMRNFPVSRGTVAGVLKGYSGLSAAVFTEIYSVGFHNSSP 510
LR G+ W L AA+W+Q +G + F YS LKSVLG +Q ++ L VA+D+G+ G G+A FP ++L + F+G+GV WL I+ +P+ +++L +A S W +TA + +R+FP +R + ++G+SAA +YS+ F+ +P
Sbjct: 34 LRTMFGRWRKWTVLVAAIWIQASTGTNFDFSAYSSHLKSVLGISQVRLNYLAVASDLGKAFGWSSGIALGYFPLSVVLFAAAAMGFVGYGVQWLVITNII-TLPYSLVFLCCLLAGLSICWFNTACFILCIRHFPNNRALALSLTVSFNGISAA----LYSLAFNAINP 197 HSP 2 Score: 63.5438 bits (153), Expect = 2.593e-9
Identity = 66/238 (27.73%), Postives = 109/238 (45.80%), Query Frame = 1
Query: 964 EGEGAVRKKRRPKRGEDFKFTEALVKADFWLLXXXXXXXXXXXXXXLNNLAQIGIAQGMEDTTVXXXXXXXXNFVGRLGGGVVSEHFVRTKTIPRTIWMTCTQII--MIFLYLLFAYAIKGTLYPAIAVLGICYGVQFSIVIPTVSELFGLKHFGLLSNFMGLGNPXXXXXXXXXXXXHVYDNEAAKQHGEGLIASGVACIGPSCFQLTFFTLAGVCVAGTLSSIILTIRIKPVYQML 1671
E G ++ + G++ F + + +FWL + YF G G+ NNL QI + G TT++ SF +F GRL R + + RT W + + F L + + + L A A++G+ G F+ + S+LFG G+ N + + N SL +A +Y+ A+ +++ + CIG C+ TF + + G +SS+ L IR KPVY L
Sbjct: 332 EHMGTAKEGNTVRLGDEHSFRLLISRLEFWLYYIAYFCGGTIGLVYSNNLGQIAQSLGQNSTTLVTIYSSF-SFFGRLLSAAPDFMHKRFR-LTRTGWFAIALLPTPIAFFLLAVSSSQQTALQTATALIGLSSGFIFAAAVSITSDLFGPNSVGVNHNIL-ITNIPIGSLLYGYIAASIYEANASPDITP-IVSDSIVCIGRDCYFKTFVFWGCLSILGVVSSLSLYIRTKPVYHRL 565
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan01g250800 vs. DB:Swiss
Analysis Date: 2020-05-21 (
BLAST: V. angularis Jingnong 6 genome v1.1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 Expect = 4.28e-14 / Id = 33.73 Expect = 2.59e-9 / Id = 33.73 Sequence NFD4_ARATH
Match Name E-value Identity Description
NFD4_ARATH 4.280e-14 33.73 Protein NUCLEAR FUSION DEFECTIVE 4 OS=Arabidopsis ... [more]
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InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 Expect = 1.2E-82 / Score = 277.0 Expect = 5.4E-12 / Score = 47.4 Expect = 4.38967E-108 / Score = 327.286 Score = Score = Sequence PF06813 G3DSA:1.20.1250.20 cd17354 SSF103473 SSF103473
IPR Term IPR Description Source Source Term Source Description Alignment
IPR010658 Nodulin-like PFAM PF06813 Nodulin-like coord: 11..258 None No IPR available GENE3D 1.20.1250.20 coord: 340..551 None No IPR available CDD cd17354 MFS_Mch1p_like coord: 10..540 IPR036259 MFS transporter superfamily SUPERFAMILY 103473 MFS general substrate transporter coord: 11..195 IPR036259 MFS transporter superfamily SUPERFAMILY 103473 MFS general substrate transporter coord: 216..552
Sequences
The
following sequences are available for this feature:
mRNA sequence
>LR48_mrnaVigan01g250800_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan01g250800_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan01g250800; organism=Vigna angularis; type=mRNA; length=2544bp back to top protein sequence of LR48_mrnaVigan01g250800_Va_Jingnong6_v1.1
>LR48_mrnaVigan01g250800_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan01g250800_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan01g250800_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=571bp back to top mRNA from alignment at Chr_1-CM003371.1:33364134..33366677+
Legend: polypeptide start_codon exon CDS intron stop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan01g250800_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan01g250800_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan01g250800; organism=Vigna angularis; type=mRNA; length=2544bp; location=Sequence derived from: Chr_1-CM003371.1:33364134..33366677+ (Vigna angularisATG TTGAGAGTGAAGGGAGGGAAAAGGCCACCTTGGGTGGGACTTGGAGC
TGCCGTGTGGGTTCAGATTTGTTCAGGAAATGGCTACACTTTCCCTCTCT
ACTCTCATTCCTTGAAATCCGTTTTGGGTTTCAACCAGAGTCAGATTACT
CTGCTTGGTGTTGCCAATGATATTGGTGAGAACCTTGGCATTCTTCCTGG
TCTCGCCTGCAACAAGTTCCCCCCTTGGCTCATTCTTCTCATTGGTGGTC
TCTTATCATTCCTTGGTTTTGGTGTTCTCTGGCTCGCTATTTCTAAAACA
TTTGACTGCGTTCCTTTCATTGTGGtaacttcatcattttcatatctttt
tcGCTTTATATCAGcaagtttatgttttttttttcctgggATCATAGAGT
CAGTTCTGTTTTACTGCCTTATTGGTTGTTGGGTATTTGATATCTTTAGA
CAAACATGATCTGAGACAAAGATGAAAGGAAGTATTTAGGATAAGGACTT
TGATATGAGAATAGCCACAGTATCGAACATTTTCCATAGCTTGTttgaaa
ttgagattccatgtttgtctttttttttatatttctctaCCTACAATTTT
CCTTTCATTGTATTGTTGTTTGGTTCATCTAATAATTGTTAGATGGAAAA
TTGTTTGTTAGGCTATGCATGATATTGAAAGGGCCTGGTTCATAATCATC
TCTTTTTATCTTTGGTGCTGCAG CTATGGCTTGCACTTGCTGTAGCTACC
AACAGCTGTGCATGGTTATCTACTGCTATTCTAGTCACCAACATGAGAAA
TTTCCCTGTCAGTAGAGGCACAGTTGCAGGAGTCCTGAAAGGTTATTCGG
GGCTCAGTGCTGCAGTTTTTACGGAAATTTACAGCGTGGGTTTTCATAAT
TCTTCACCCAACTTCCTGTTGTTCCTTGCCATTGGTATTCCTGCTTTATG
CTTCAGTACAATGTTTCTTGTTCGGCCTTGCACTCCGGCTTCCGGTGAAG
ATTCTTCTGAAAACAGTCATTTTTTGTTCATCCAAGTTGCTAGTGTAGCC
TTGGGTTTATACTTACTTGCAACAACAATACTCGACAACTTTGTCCCCAT
GAATTATACAGTATCATTTGTTATGTTGGCTGTGATGATTCTCCTTCTCT
TGGCTCCCCTTGCAATCCCTATAAAGATGACACTGTGCCCCAGAAAAGCA
TCTGCATCAGAAACACCAGAGCAACATGTTGGATCTTCCGACTTTCTGGT
TCAAGATGGCAAGGTGGACAACACAGAACCCTTGCTATCATCTTCATCAA
CCAGTGGCCTTGGAAGTTTTAATGATGTGGATGGTTCAGCTGAGGTGGCC
ATGCTTCTCGCTGAGGGTGAGGGGgcagtgaggaagaagagaaggccCAA
GAGAGGGGAAGATTTTAAGTTTACCGAGGCTCTCGTTAAGGCAGATTTCT
GGCTGCTGttttttgtttactttgttGGGGTTGGAACAGGGGTTAGCGTT
CTGAATAATTTGGCTCAGATTGGCATTGCACAAGGTATGGAAGATACCAC
TGTTTTGCTGTCATTATTCAGCTTTTTCAATTTTGTGGGTCGGCTAGGTG
GAGGAGTTGTTTCAGAACATTTTGTCAG GTAAGTAATTATTCTCGGTTAA
GTTAAGATTTTACTCTCGCCCATATCAGTTAAGAGATCATTGTAATCATT
TCAGATAATTAGTGCCGTGCTACTTTTGACTAGCACTTGTTATCTGCTGT
TTTGCCCACCACAAGTAGGTAGCAATTGTGTTGAAGtgtatgtttatttt
tagaTGCTAAAGTAGACTTTTCTAATTTGTGAAAGTAAAAGTAGGTAGTG
ATTGTGTTGAGTTGAAGTGGATGtttagttttagaattttatagTTGTAT
ATCAGTCATTCGTGAACtgttttaatatacttttaagaCAATTACTATAA
AACTAAATACActtgtaatttgttttatacACATGTACCTGTCTTTTTAC
CATCTAAATATGAATGACGACGCATGAATAAAGTATAATTGTTTTGACAA
TTTGCAG GACAAAAACGATTCCAAGGACAATTTGGATGACATGCACGCAG
ATAATTATGATATTCTTGTACCTTCTCTTTGCATATGCTATCAAGGGAAC
ACTATATCCTGCAATTGCAGTTCTTGGCATCTGCTATGGCGTGCAATTTT
CCATAGTGATTCCCACTGTTTCAGAGCTTTTTGGGTTGAAACACTTTGGT
TTGTTGAGCAACTTCATGGGTCTGGGGAATCCACTTGGTGCATCACTTTT
CTCGGCTCTTCTAGCAGGACACGTATATGATAACGAGGCAGCAAAACAAC
ATGGCGAAGGCCTCATTGCTTCAGGTGTTGCATGTATTGGTCCAAGTTGT
TTTCAGCTAACCTTTTTCACTCTGGCTGGTGTGTGTGTTGCGGGTACTCT
CTCCAGCATTATCTTGACTATAAGAATTAAGCCCGTTTACCAAATGCTTT
ATTCTGGGGGTTCGTTTAAGCTACCTCAAACTTCAGGCCACTAA back to top Coding sequence (CDS) from alignment at Chr_1-CM003371.1:33364134..33366677+
>LR48_mrnaVigan01g250800_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan01g250800_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan01g250800; organism=Vigna angularis; type=CDS; length=1716bp; location=Sequence derived from: Chr_1-CM003371.1:33364134..33366677+ (Vigna angularis back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
