LR48_mrnaVigan04g207600
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Homology
BLAST of LR48_mrnaVigan04g207600 vs. DB:Swiss
Match: SAU71_ARATH (Auxin-responsive protein SAUR71 OS=Arabidopsis thaliana OX=3702 GN=SAUR71 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 5.356e-16 Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 1 Query: 208 VPKGYVAVCVGLDLSRFVIPTEYLGHQAFHMLLREAEEEFGFEQTGVLRIPCEVSVFESILK 393 VP+G+V V VG ++ RFV+ E L H F LL+++ +E+G+EQ GVLRIPC V VFE IL+ Sbjct: 38 VPEGHVPVYVGHEMERFVVNAELLNHPVFVALLKQSAQEYGYEQQGVLRIPCHVLVFERILE 99
BLAST of LR48_mrnaVigan04g207600 vs. DB:Swiss
Match: SAU72_ARATH (Auxin-responsive protein SAUR72 OS=Arabidopsis thaliana OX=3702 GN=SAUR72 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 6.690e-14 Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 1 Query: 208 VPKGYVAVCVGLDLSRFVIPTEYLGHQAFHMLLREAEEEFGFEQTGVLRIPCEVSVFESILK 393 VP+G+V V VG ++ RFV+ E L H F LL + +E+G+EQ GVL+IPC V VFE I++ Sbjct: 50 VPEGHVPVYVGDEMERFVVSAELLNHPVFIGLLNRSAQEYGYEQKGVLQIPCHVLVFERIME 111
BLAST of LR48_mrnaVigan04g207600 vs. DB:Swiss
Match: AX15A_SOYBN (Auxin-induced protein 15A OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 2.109e-13 Identity = 33/66 (50.00%), Postives = 40/66 (60.61%), Query Frame = 1 Query: 208 VPKGYVAVCVGLDLSRFVIPTEYLGHQAFHMLLREAEEEFGFEQT-GVLRIPCEVSVFESILKIVE 402 PKGY+AV VG L RFVIP YL +F LL +AEEEFG++ G L IPC VF+ I + Sbjct: 17 APKGYLAVYVGEKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCSEDVFQCITSCLN 82
BLAST of LR48_mrnaVigan04g207600 vs. DB:Swiss
Match: SAU10_ARATH (Protein SMALL AUXIN UP-REGULATED RNA 10 OS=Arabidopsis thaliana OX=3702 GN=SAUR10 PE=2 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 1.193e-12 Identity = 29/63 (46.03%), Postives = 40/63 (63.49%), Query Frame = 1 Query: 208 VPKGYVAVCVGLDLSRFVIPTEYLGHQAFHMLLREAEEEFGFEQTGVLRIPCEVSVFESILKI 396 VPKG+ V VG + SR+++P +L H F LLR AEEEFGF+ L IPC+ F S++ + Sbjct: 48 VPKGHFPVYVGPNRSRYIVPISWLHHSEFQTLLRLAEEEFGFDHDMGLTIPCDEVFFRSLISM 110
BLAST of LR48_mrnaVigan04g207600 vs. DB:Swiss
Match: SAU40_ARATH (Auxin-responsive protein SAUR40 OS=Arabidopsis thaliana OX=3702 GN=SAUR40 PE=2 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 1.487e-12 Identity = 30/62 (48.39%), Postives = 39/62 (62.90%), Query Frame = 1 Query: 208 VPKGYVAVCVGLDLSRFVIPTEYLGHQAFHMLLREAEEEFGFEQTGVLRIPCEVSVFESILK 393 VP G+V V VG D RFV+ E L H F LL + +E+G+ Q GVL IPC V VFE +++ Sbjct: 48 VPSGHVPVNVGEDKERFVVSAELLNHPVFVGLLNRSAQEYGYTQKGVLHIPCNVFVFEQVVE 109
BLAST of LR48_mrnaVigan04g207600 vs. DB:Swiss
Match: AXX15_SOYBN (Auxin-induced protein X15 OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 2.041e-12 Identity = 31/61 (50.82%), Postives = 39/61 (63.93%), Query Frame = 1 Query: 208 VPKGYVAVCVGLDLSRFVIPTEYLGHQAFHMLLREAEEEFGFEQT-GVLRIPCEVSVFESI 387 PKGY+AV VG + RFVIP Y+ +F LL +AEEEFG++ G L IPC VF+ I Sbjct: 17 APKGYLAVYVGEKMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIPCSEEVFQRI 77
BLAST of LR48_mrnaVigan04g207600 vs. DB:Swiss
Match: SAU50_ARATH (Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 SV=1) HSP 1 Score: 63.5438 bits (153), Expect = 2.199e-12 Identity = 28/64 (43.75%), Postives = 42/64 (65.62%), Query Frame = 1 Query: 208 VPKGYVAVCVGLDLSRFVIPTEYLGHQAFHMLLREAEEEFGFEQTGVLRIPCEVSVFESILKIV 399 VPKG+ V VG + SR+++P +L H F LL+ AEEEFGF+ L IPC+ VF+++ ++ Sbjct: 43 VPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQRAEEEFGFDHDMGLTIPCDELVFQTLTSMI 106
BLAST of LR48_mrnaVigan04g207600 vs. DB:Swiss
Match: AX6B_SOYBN (Auxin-induced protein 6B OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 4.715e-12 Identity = 32/66 (48.48%), Postives = 39/66 (59.09%), Query Frame = 1 Query: 208 VPKGYVAVCVGLDLSRFVIPTEYLGHQAFHMLLREAEEEFGFEQ-TGVLRIPCEVSVFESILKIVE 402 V KGY+AV VG + RFVIP YL +F LL +AEEEFG+ G L IPC VF+ I + Sbjct: 25 VEKGYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGGLTIPCSEDVFQHITSFLN 90
BLAST of LR48_mrnaVigan04g207600 vs. DB:Swiss
Match: ARG7_VIGRR (Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata OX=3916 GN=ARG7 PE=2 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 5.007e-12 Identity = 30/61 (49.18%), Postives = 39/61 (63.93%), Query Frame = 1 Query: 208 VPKGYVAVCVGLDLSRFVIPTEYLGHQAFHMLLREAEEEFGFEQT-GVLRIPCEVSVFESI 387 PKGY+AV VG ++ RFVIP +L F LL +AEEEFG++ G L IPC +F+ I Sbjct: 25 APKGYLAVYVGENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMGGLTIPCSEDLFQHI 85
BLAST of LR48_mrnaVigan04g207600 vs. DB:Swiss
Match: SAU41_ARATH (Auxin-responsive protein SAUR41 OS=Arabidopsis thaliana OX=3702 GN=SAUR41 PE=2 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 2.217e-11 Identity = 28/65 (43.08%), Postives = 41/65 (63.08%), Query Frame = 1 Query: 205 VVPKGYVAVCVGLDLSRFVIPTEYLGHQAFHMLLREAEEEFGFEQTGVLRIPCEVSVFESILKIV 399 VP G+V V VG ++ RFV+ E + H F LL + +E+G+ Q GVL IPC V VFE +++ + Sbjct: 53 TVPAGHVPVYVGEEMERFVVSAELMNHPIFVGLLNRSAQEYGYAQKGVLHIPCHVIVFERVVETL 117 The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan04g207600 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan04g207600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g207600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g207600; organism=Vigna angularis; type=mRNA; length=519bpback to top protein sequence of LR48_mrnaVigan04g207600_Va_Jingnong6_v1.1 >LR48_mrnaVigan04g207600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g207600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g207600_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=172bpback to top mRNA from alignment at Chr_4-CM003374.1:29958722..29959240+ Legend: polypeptidestart_codonexonCDSstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>LR48_mrnaVigan04g207600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g207600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g207600; organism=Vigna angularis; type=mRNA; length=519bp; location=Sequence derived from: Chr_4-CM003374.1:29958722..29959240+ (Vigna angularisback to top Coding sequence (CDS) from alignment at Chr_4-CM003374.1:29958722..29959240+ >LR48_mrnaVigan04g207600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g207600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g207600; organism=Vigna angularis; type=CDS; length=519bp; location=Sequence derived from: Chr_4-CM003374.1:29958722..29959240+ (Vigna angularisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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