LR48_mrnaVigan04g207600

Transcript Overview
NameLR48_mrnaVigan04g207600
Unique NameLR48_mrnaVigan04g207600_Va_Jingnong6_v1.1
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length519
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_4-CM003374.1supercontigChr_4-CM003374.1:29958722..29959240 +Vigna angularis Jingnong 6 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna angularis Jingnong 6 genome v1.12020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.12020-05-21
BLAST: V. angularis Jingnong 6 genome v1.12020-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ascaR548Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anasL0113Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0368Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0422Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0848Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0856Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asccR0865Cajanus cajan Asha genome v1.0Cajanus cajan
ascrR634Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
aspsR548Pisum sativum Cameor genome v1aPisum sativum
aspsR578Pisum sativum Cameor genome v1aPisum sativum
aspvR644Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
asvuR538Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
astifR592Vicia faba cv. Tiffany genome v1.0Vicia faba
asvfhR606Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvrvR488Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvssR652Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvuaR512Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ascanR493Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
jg35887.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigun09g198600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-XM_014645269.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-XM_004498495.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vfaba.Hedin2.R1.3g199040.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-TanjilR_15715Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Cr_09716.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Psat6g034560.1Pisum sativum Cameor genome v1aPisum sativum
Ca_11009Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Psat5g024720.1Pisum sativum Cameor genome v1aPisum sativum
rna-TanjilR_32954Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vfaba.Tiffany.R1.3g163960.1Vicia faba cv. Tiffany genome v1.0Vicia faba
evm.model.Chr09.1715Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Phvul.009G103800.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LR48_Vigan04g207600gene-LR48_Vigan04g207600_Va_Jingnong6_v1.1Vigna angularisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g207600LR48_mrnaVigan04g207600_Va_Jingnong6_v1.1-proteinVigna angularispolypeptide
LR48_mrnaVigan04g207600_Va_Jingnong6_v1.1LR48_mrnaVigan04g207600_Va_Jingnong6_v1.1Vigna angularispolypeptide


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g207600_Va_Jingnong6_v1.1-start_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:29958722..29958724LR48_mrnaVigan04g207600_Va_Jingnong6_v1.1-start_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:29958722..29958724Vigna angularisstart_codon


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g207600_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:29958722..29959240LR48_mrnaVigan04g207600_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:29958722..29959240Vigna angularisexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g207600_Va_Jingnong6_v1.1-CDS-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:29958722..29959240LR48_mrnaVigan04g207600_Va_Jingnong6_v1.1-CDS-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:29958722..29959240Vigna angularisCDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g207600_Va_Jingnong6_v1.1-stop_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:29959238..29959240LR48_mrnaVigan04g207600_Va_Jingnong6_v1.1-stop_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:29959238..29959240Vigna angularisstop_codon


Homology
[Close]
BLAST of LR48_mrnaVigan04g207600 vs. DB:Swiss
Match: SAU71_ARATH (Auxin-responsive protein SAUR71 OS=Arabidopsis thaliana OX=3702 GN=SAUR71 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.356e-16
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:  208 VPKGYVAVCVGLDLSRFVIPTEYLGHQAFHMLLREAEEEFGFEQTGVLRIPCEVSVFESILK 393
            VP+G+V V VG ++ RFV+  E L H  F  LL+++ +E+G+EQ GVLRIPC V VFE IL+
Sbjct:   38 VPEGHVPVYVGHEMERFVVNAELLNHPVFVALLKQSAQEYGYEQQGVLRIPCHVLVFERILE 99
[Close]
BLAST of LR48_mrnaVigan04g207600 vs. DB:Swiss
Match: SAU72_ARATH (Auxin-responsive protein SAUR72 OS=Arabidopsis thaliana OX=3702 GN=SAUR72 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.690e-14
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:  208 VPKGYVAVCVGLDLSRFVIPTEYLGHQAFHMLLREAEEEFGFEQTGVLRIPCEVSVFESILK 393
            VP+G+V V VG ++ RFV+  E L H  F  LL  + +E+G+EQ GVL+IPC V VFE I++
Sbjct:   50 VPEGHVPVYVGDEMERFVVSAELLNHPVFIGLLNRSAQEYGYEQKGVLQIPCHVLVFERIME 111
[Close]
BLAST of LR48_mrnaVigan04g207600 vs. DB:Swiss
Match: AX15A_SOYBN (Auxin-induced protein 15A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 2.109e-13
Identity = 33/66 (50.00%), Postives = 40/66 (60.61%), Query Frame = 1 
Query:  208 VPKGYVAVCVGLDLSRFVIPTEYLGHQAFHMLLREAEEEFGFEQT-GVLRIPCEVSVFESILKIVE 402
             PKGY+AV VG  L RFVIP  YL   +F  LL +AEEEFG++   G L IPC   VF+ I   + 
Sbjct:   17 APKGYLAVYVGEKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCSEDVFQCITSCLN 82
[Close]
BLAST of LR48_mrnaVigan04g207600 vs. DB:Swiss
Match: SAU10_ARATH (Protein SMALL AUXIN UP-REGULATED RNA 10 OS=Arabidopsis thaliana OX=3702 GN=SAUR10 PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.193e-12
Identity = 29/63 (46.03%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:  208 VPKGYVAVCVGLDLSRFVIPTEYLGHQAFHMLLREAEEEFGFEQTGVLRIPCEVSVFESILKI 396
            VPKG+  V VG + SR+++P  +L H  F  LLR AEEEFGF+    L IPC+   F S++ +
Sbjct:   48 VPKGHFPVYVGPNRSRYIVPISWLHHSEFQTLLRLAEEEFGFDHDMGLTIPCDEVFFRSLISM 110
[Close]
BLAST of LR48_mrnaVigan04g207600 vs. DB:Swiss
Match: SAU40_ARATH (Auxin-responsive protein SAUR40 OS=Arabidopsis thaliana OX=3702 GN=SAUR40 PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.487e-12
Identity = 30/62 (48.39%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:  208 VPKGYVAVCVGLDLSRFVIPTEYLGHQAFHMLLREAEEEFGFEQTGVLRIPCEVSVFESILK 393
            VP G+V V VG D  RFV+  E L H  F  LL  + +E+G+ Q GVL IPC V VFE +++
Sbjct:   48 VPSGHVPVNVGEDKERFVVSAELLNHPVFVGLLNRSAQEYGYTQKGVLHIPCNVFVFEQVVE 109
[Close]
BLAST of LR48_mrnaVigan04g207600 vs. DB:Swiss
Match: AXX15_SOYBN (Auxin-induced protein X15 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 2.041e-12
Identity = 31/61 (50.82%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:  208 VPKGYVAVCVGLDLSRFVIPTEYLGHQAFHMLLREAEEEFGFEQT-GVLRIPCEVSVFESI 387
             PKGY+AV VG  + RFVIP  Y+   +F  LL +AEEEFG++   G L IPC   VF+ I
Sbjct:   17 APKGYLAVYVGEKMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIPCSEEVFQRI 77
[Close]
BLAST of LR48_mrnaVigan04g207600 vs. DB:Swiss
Match: SAU50_ARATH (Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 2.199e-12
Identity = 28/64 (43.75%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:  208 VPKGYVAVCVGLDLSRFVIPTEYLGHQAFHMLLREAEEEFGFEQTGVLRIPCEVSVFESILKIV 399
            VPKG+  V VG + SR+++P  +L H  F  LL+ AEEEFGF+    L IPC+  VF+++  ++
Sbjct:   43 VPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQRAEEEFGFDHDMGLTIPCDELVFQTLTSMI 106
[Close]
BLAST of LR48_mrnaVigan04g207600 vs. DB:Swiss
Match: AX6B_SOYBN (Auxin-induced protein 6B OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 4.715e-12
Identity = 32/66 (48.48%), Postives = 39/66 (59.09%), Query Frame = 1 
Query:  208 VPKGYVAVCVGLDLSRFVIPTEYLGHQAFHMLLREAEEEFGFEQ-TGVLRIPCEVSVFESILKIVE 402
            V KGY+AV VG  + RFVIP  YL   +F  LL +AEEEFG+    G L IPC   VF+ I   + 
Sbjct:   25 VEKGYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGGLTIPCSEDVFQHITSFLN 90
[Close]
BLAST of LR48_mrnaVigan04g207600 vs. DB:Swiss
Match: ARG7_VIGRR (Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata OX=3916 GN=ARG7 PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 5.007e-12
Identity = 30/61 (49.18%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:  208 VPKGYVAVCVGLDLSRFVIPTEYLGHQAFHMLLREAEEEFGFEQT-GVLRIPCEVSVFESI 387
             PKGY+AV VG ++ RFVIP  +L    F  LL +AEEEFG++   G L IPC   +F+ I
Sbjct:   25 APKGYLAVYVGENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMGGLTIPCSEDLFQHI 85
[Close]
BLAST of LR48_mrnaVigan04g207600 vs. DB:Swiss
Match: SAU41_ARATH (Auxin-responsive protein SAUR41 OS=Arabidopsis thaliana OX=3702 GN=SAUR41 PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 2.217e-11
Identity = 28/65 (43.08%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:  205 VVPKGYVAVCVGLDLSRFVIPTEYLGHQAFHMLLREAEEEFGFEQTGVLRIPCEVSVFESILKIV 399
             VP G+V V VG ++ RFV+  E + H  F  LL  + +E+G+ Q GVL IPC V VFE +++ +
Sbjct:   53 TVPAGHVPVYVGEEMERFVVSAELMNHPIFVGLLNRSAQEYGYAQKGVLHIPCHVIVFERVVETL 117
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan04g207600 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 10
Match NameE-valueIdentityDescription
SAU71_ARATH5.356e-1653.23Auxin-responsive protein SAUR71 OS=Arabidopsis tha... [more]
SAU72_ARATH6.690e-1450.00Auxin-responsive protein SAUR72 OS=Arabidopsis tha... [more]
AX15A_SOYBN2.109e-1350.00Auxin-induced protein 15A OS=Glycine max OX=3847 P... [more]
SAU10_ARATH1.193e-1246.03Protein SMALL AUXIN UP-REGULATED RNA 10 OS=Arabido... [more]
SAU40_ARATH1.487e-1248.39Auxin-responsive protein SAUR40 OS=Arabidopsis tha... [more]
AXX15_SOYBN2.041e-1250.82Auxin-induced protein X15 OS=Glycine max OX=3847 P... [more]
SAU50_ARATH2.199e-1243.75Auxin-responsive protein SAUR50 OS=Arabidopsis tha... [more]
AX6B_SOYBN4.715e-1248.48Auxin-induced protein 6B OS=Glycine max OX=3847 PE... [more]
ARG7_VIGRR5.007e-1249.18Indole-3-acetic acid-induced protein ARG7 OS=Vigna... [more]
SAU41_ARATH2.217e-1143.08Auxin-responsive protein SAUR41 OS=Arabidopsis tha... [more]
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InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003676Small auxin-up RNAPFAMPF02519Auxin_induciblecoord: 24..132
e-value: 5.3E-27
score: 93.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..46

Sequences
The following sequences are available for this feature:

mRNA sequence

>LR48_mrnaVigan04g207600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g207600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g207600; organism=Vigna angularis; type=mRNA; length=519bp
ATGTCCATGGATCCTACCAAGAAGCCTAACAAGATCAGAGACATAGTGAG
GCTTCAACAGATTCTTAAGAAATGGAGAAGGGTTGCAAACTCTTCAAAAA
CAAGTAGAAGTAACAgtaacaacagcaacaacaccGGCAGAAGCATCAAA
TTTCTCAAAAGAACACTTTCTCTGTCTGAACGTGAGGGAGGAGGATCGAG
CAGTGTTGTTCCCAAGGGCTACGTTGCTGTTTGTGTTGGCTTGGACCTTA
GCAGGTTCGTTATACCAACCGAGTATTTGGGTCACCAAGCCTTTCACATG
TTACTCAGAGAAGCTGAGGAAGAGTTTGGGTTTGAACAAACTGGGGTTCT
CAGAATCCCTTGTGAAGTGTCTGTGTTCGAGAGTATCTTGAAGATTGTGG
AGAGAAAGGACAAGTTTTTCACTCAGAAATGCAGGTTTAGCATTGAGAAA
ATGATGGGATATTGTTCCTCCAACAACCTTGCTTATTCTCATCACCCTCC
AAGTCCAATGTGCAGATAG
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protein sequence of LR48_mrnaVigan04g207600_Va_Jingnong6_v1.1

>LR48_mrnaVigan04g207600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g207600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g207600_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=172bp
MSMDPTKKPNKIRDIVRLQQILKKWRRVANSSKTSRSNSNNSNNTGRSIK
FLKRTLSLSEREGGGSSSVVPKGYVAVCVGLDLSRFVIPTEYLGHQAFHM
LLREAEEEFGFEQTGVLRIPCEVSVFESILKIVERKDKFFTQKCRFSIEK
MMGYCSSNNLAYSHHPPSPMCR
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mRNA from alignment at Chr_4-CM003374.1:29958722..29959240+

Legend: polypeptidestart_codonexonCDSstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan04g207600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g207600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g207600; organism=Vigna angularis; type=mRNA; length=519bp; location=Sequence derived from: Chr_4-CM003374.1:29958722..29959240+ (Vigna angularis
ATGTCCATGGATCCTACCAAGAAGCCTAACAAGATCAGAGACATAGTGAG
GCTTCAACAGATTCTTAAGAAATGGAGAAGGGTTGCAAACTCTTCAAAAA
CAAGTAGAAGTAACAgtaacaacagcaacaacaccGGCAGAAGCATCAAA
TTTCTCAAAAGAACACTTTCTCTGTCTGAACGTGAGGGAGGAGGATCGAG
CAGTGTTGTTCCCAAGGGCTACGTTGCTGTTTGTGTTGGCTTGGACCTTA
GCAGGTTCGTTATACCAACCGAGTATTTGGGTCACCAAGCCTTTCACATG
TTACTCAGAGAAGCTGAGGAAGAGTTTGGGTTTGAACAAACTGGGGTTCT
CAGAATCCCTTGTGAAGTGTCTGTGTTCGAGAGTATCTTGAAGATTGTGG
AGAGAAAGGACAAGTTTTTCACTCAGAAATGCAGGTTTAGCATTGAGAAA
ATGATGGGATATTGTTCCTCCAACAACCTTGCTTATTCTCATCACCCTCC
AAGTCCAATGTGCAGATAG
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Coding sequence (CDS) from alignment at Chr_4-CM003374.1:29958722..29959240+

>LR48_mrnaVigan04g207600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g207600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g207600; organism=Vigna angularis; type=CDS; length=519bp; location=Sequence derived from: Chr_4-CM003374.1:29958722..29959240+ (Vigna angularis
ATGTCCATGGATCCTACCAAGAAGCCTAACAAGATCAGAGACATAGTGAG
GCTTCAACAGATTCTTAAGAAATGGAGAAGGGTTGCAAACTCTTCAAAAA
CAAGTAGAAGTAACAgtaacaacagcaacaacaccGGCAGAAGCATCAAA
TTTCTCAAAAGAACACTTTCTCTGTCTGAACGTGAGGGAGGAGGATCGAG
CAGTGTTGTTCCCAAGGGCTACGTTGCTGTTTGTGTTGGCTTGGACCTTA
GCAGGTTCGTTATACCAACCGAGTATTTGGGTCACCAAGCCTTTCACATG
TTACTCAGAGAAGCTGAGGAAGAGTTTGGGTTTGAACAAACTGGGGTTCT
CAGAATCCCTTGTGAAGTGTCTGTGTTCGAGAGTATCTTGAAGATTGTGG
AGAGAAAGGACAAGTTTTTCACTCAGAAATGCAGGTTTAGCATTGAGAAA
ATGATGGGATATTGTTCCTCCAACAACCTTGCTTATTCTCATCACCCTCC
AAGTCCAATGTGCAGATAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR003676SAUR_fam
Vocabulary: Biological Process
TermDefinition
GO:0009733response to auxin