LR48_mrnaVigan04g210400

Transcript Overview


Name	LR48_mrnaVigan04g210400
Unique Name	LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1
Type	mRNA
Organism	Vigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length	969
Product	hypothetical protein

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr_4-CM003374.1	supercontig	Chr_4-CM003374.1:30220034..30221002 -	Vigna angularis Jingnong 6 genome v1.1	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Vigna angularis Jingnong 6 genome v1.1	2020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.1	2020-05-21
BLAST: V. angularis Jingnong 6 genome v1.1	2020-05-21

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
ascaR548	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ascaR553	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
asasR212	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anasL0113	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anasL0368	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anasL0422	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anasL0840	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anasL0856	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ascaiR647	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ascaiR667	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
asccR0835	Cajanus cajan Asha genome v1.0	Cajanus cajan
ascrR634	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
ascrR640	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
aspsR537	Pisum sativum Cameor genome v1a	Pisum sativum
aspsR548	Pisum sativum Cameor genome v1a	Pisum sativum
aspsR578	Pisum sativum Cameor genome v1a	Pisum sativum
aspvR591	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
aspvR644	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
asvuR532	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
asvuR538	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
astifR576	Vicia faba cv. Tiffany genome v1.0	Vicia faba
astifR592	Vicia faba cv. Tiffany genome v1.0	Vicia faba
asvfhR590	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
asvfhR606	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
asvrvR488	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
asvrvR506	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
asvssR620	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
asvssR652	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
asvuaR489	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
asvuaR512	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
ascanR493	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
ascanR500	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum

Orthologs


Gene/Transcript	Assembly	Species
Ca_09658.1	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
rna-KK1_003478	Cajanus cajan Asha genome v1.0	Cajanus cajan
Vfaba.Hedin2.R1.3g200560.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
rna-TanjilR_07917	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
rna-XM_014647086.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
rna-XM_014643357.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
evm.model.Chr09.1686.1.62113178	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
Phvul.001G058700.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
evm.model.Chr08.105.2.62113169	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
rna-TanjilR_12526	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
Vfaba.Tiffany.R1.3g165560.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
Phvul.009G100500.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
Ca_10975	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
Vigun09g201600.2	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
Vigun08g063700.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
rna-XM_012715232.2	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
jg35844.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
LR48_mrnaVigan07g234700	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-LR48_Vigan04g210400	gene-LR48_Vigan04g210400_Va_Jingnong6_v1.1	Vigna angularis	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
LR48_mrnaVigan04g210400	LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1-protein	Vigna angularis	polypeptide
LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1	LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1	Vigna angularis	polypeptide

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1-start_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:30221000..30221002	LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1-start_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:30221000..30221002	Vigna angularis	start_codon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1-CDS-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:30220034..30221002	LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1-CDS-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:30220034..30221002	Vigna angularis	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:30220034..30221002	LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:30220034..30221002	Vigna angularis	exon

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1-stop_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:30220034..30220036	LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1-stop_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:30220034..30220036	Vigna angularis	stop_codon

Homology

The following BLAST results are available for this feature:

BLAST of LR48_mrnaVigan04g210400 vs.

BLAST of LR48_mrnaVigan04g210400 vs.
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 0

Position :

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x 1


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012866	Protein of unknown function DUF1644	PFAM	PF07800	DUF1644	coord: 15..165 e-value: 5.4E-59 score: 198.9
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 2..104 e-value: 4.8E-6 score: 27.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 234..249
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 223..249

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Chr_4-CM003374.1:30220034..30221002-
coding sequence from alignment at Chr_4-CM003374.1:30220034..30221002-

mRNA sequence

>LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g210400; organism=Vigna angularis; type=mRNA; length=969bp
ATGGTAGTGCGCATGGAAGATGTTCTGTTGGATACCAGTTGGGAAGATGT
AATCTGCCCTATATGCTTGGAAGTTCCTCATAATAGTGTGCTCCTTCAGT
GTTCATCTTATGATAAGGGGTGCCGTCCTTTTGTATGTGACACAAGTCAA
TTGCACTCAAATTGTTTAGATCGTTTTAAAAGAACACAAATGTCCGATGC
AAATTCCGTGGCAAATAGTGACTCAGTGGTATCTGATTGTCAATACAATT
TAAGTTGTCCCTTGTGCAGAGGTGATGTTTCTGGATGGATTATAGTTGAT
AAAGCTCGTGTGCATCTTGATGAAAAGAAGCGTTGTTGTGATGAGCAGCA
ATGTGCATTTGTTGGAAGTTACTCCGAGCTGCAGAAACATGCTCAGCTGG
AACACCCTTATGGTTGTCCATCAAAAATTGATCCTGCCAGGCAGCTTGAT
TGGGAAAATTTTCAGCAGTCATCCGAGATTGTAGATGTTTTGAGCACTAT
TCATTCAGAAGTTCCACGTGGAGTGGTTTTAGGAGATTATGTGATTGAAT
ATGGGGATGATGATAGTGCAGATGATTTTGAGGACTTCCCTGGAGATGAA
GGTAACTGGTGGACCTCTTGTATTTTGTATAATGCCTTCAATAACTTTAG
AAGTTCTAGAAACCGAAGAAGGGCAAGAGCTGGTGATCCTAGTAGGGGTA
ATCGCCCTTTAAGCTCTGATACTTCAAATTCTGATGAAGGTTCTGTAGCA
TCTGTAGATTATGGCGAGTATAGGCTAGAAGAGATTGATGATGATTTTGT
TAGTTCAATTGGCCCTTTGAGGGGTGGCAATGGTTTTCGCAGGTGGGTAG
TATTTTTCCTTATTTTTGTTTTCAGTTTTGACATTTCTTTGCTTGTCTTT
CTGTTTAACATTTATGAGATTAAAATGAATTTATGTGAAGCTTGCTTCTC
AAACATCCCAAGCAAATGA

protein sequence of LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1

>LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=322bp
MVVRMEDVLLDTSWEDVICPICLEVPHNSVLLQCSSYDKGCRPFVCDTSQ
LHSNCLDRFKRTQMSDANSVANSDSVVSDCQYNLSCPLCRGDVSGWIIVD
KARVHLDEKKRCCDEQQCAFVGSYSELQKHAQLEHPYGCPSKIDPARQLD
WENFQQSSEIVDVLSTIHSEVPRGVVLGDYVIEYGDDDSADDFEDFPGDE
GNWWTSCILYNAFNNFRSSRNRRRARAGDPSRGNRPLSSDTSNSDEGSVA
SVDYGEYRLEEIDDDFVSSIGPLRGGNGFRRWVVFFLIFVFSFDISLLVF
LFNIYEIKMNLCEACFSNIPSK

mRNA from alignment at Chr_4-CM003374.1:30220034..30221002-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g210400; organism=Vigna angularis; type=mRNA; length=969bp; location=Sequence derived from: Chr_4-CM003374.1:30220034..30221002- (Vigna angularis
ATGGTAGTGCGCATGGAAGATGTTCTGTTGGATACCAGTTGGGAAGATGT
AATCTGCCCTATATGCTTGGAAGTTCCTCATAATAGTGTGCTCCTTCAGT
GTTCATCTTATGATAAGGGGTGCCGTCCTTTTGTATGTGACACAAGTCAA
TTGCACTCAAATTGTTTAGATCGTTTTAAAAGAACACAAATGTCCGATGC
AAATTCCGTGGCAAATAGTGACTCAGTGGTATCTGATTGTCAATACAATT
TAAGTTGTCCCTTGTGCAGAGGTGATGTTTCTGGATGGATTATAGTTGAT
AAAGCTCGTGTGCATCTTGATGAAAAGAAGCGTTGTTGTGATGAGCAGCA
ATGTGCATTTGTTGGAAGTTACTCCGAGCTGCAGAAACATGCTCAGCTGG
AACACCCTTATGGTTGTCCATCAAAAATTGATCCTGCCAGGCAGCTTGAT
TGGGAAAATTTTCAGCAGTCATCCGAGATTGTAGATGTTTTGAGCACTAT
TCATTCAGAAGTTCCACGTGGAGTGGTTTTAGGAGATTATGTGATTGAAT
ATGGGGATGATGATAGTGCAGATGATTTTGAGGACTTCCCTGGAGATGAA
GGTAACTGGTGGACCTCTTGTATTTTGTATAATGCCTTCAATAACTTTAG
AAGTTCTAGAAACCGAAGAAGGGCAAGAGCTGGTGATCCTAGTAGGGGTA
ATCGCCCTTTAAGCTCTGATACTTCAAATTCTGATGAAGGTTCTGTAGCA
TCTGTAGATTATGGCGAGTATAGGCTAGAAGAGATTGATGATGATTTTGT
TAGTTCAATTGGCCCTTTGAGGGGTGGCAATGGTTTTCGCAGGTGGGTAG
TATTTTTCCTTATTTTTGTTTTCAGTTTTGACATTTCTTTGCTTGTCTTT
CTGTTTAACATTTATGAGATTAAAATGAATTTATGTGAAGCTTGCTTCTC
AAACATCCCAAGCAAATGA

Coding sequence (CDS) from alignment at Chr_4-CM003374.1:30220034..30221002-

>LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g210400; organism=Vigna angularis; type=CDS; length=969bp; location=Sequence derived from: Chr_4-CM003374.1:30220034..30221002- (Vigna angularis
ATGGTAGTGCGCATGGAAGATGTTCTGTTGGATACCAGTTGGGAAGATGT
AATCTGCCCTATATGCTTGGAAGTTCCTCATAATAGTGTGCTCCTTCAGT
GTTCATCTTATGATAAGGGGTGCCGTCCTTTTGTATGTGACACAAGTCAA
TTGCACTCAAATTGTTTAGATCGTTTTAAAAGAACACAAATGTCCGATGC
AAATTCCGTGGCAAATAGTGACTCAGTGGTATCTGATTGTCAATACAATT
TAAGTTGTCCCTTGTGCAGAGGTGATGTTTCTGGATGGATTATAGTTGAT
AAAGCTCGTGTGCATCTTGATGAAAAGAAGCGTTGTTGTGATGAGCAGCA
ATGTGCATTTGTTGGAAGTTACTCCGAGCTGCAGAAACATGCTCAGCTGG
AACACCCTTATGGTTGTCCATCAAAAATTGATCCTGCCAGGCAGCTTGAT
TGGGAAAATTTTCAGCAGTCATCCGAGATTGTAGATGTTTTGAGCACTAT
TCATTCAGAAGTTCCACGTGGAGTGGTTTTAGGAGATTATGTGATTGAAT
ATGGGGATGATGATAGTGCAGATGATTTTGAGGACTTCCCTGGAGATGAA
GGTAACTGGTGGACCTCTTGTATTTTGTATAATGCCTTCAATAACTTTAG
AAGTTCTAGAAACCGAAGAAGGGCAAGAGCTGGTGATCCTAGTAGGGGTA
ATCGCCCTTTAAGCTCTGATACTTCAAATTCTGATGAAGGTTCTGTAGCA
TCTGTAGATTATGGCGAGTATAGGCTAGAAGAGATTGATGATGATTTTGT
TAGTTCAATTGGCCCTTTGAGGGGTGGCAATGGTTTTCGCAGGTGGGTAG
TATTTTTCCTTATTTTTGTTTTCAGTTTTGACATTTCTTTGCTTGTCTTT
CTGTTTAACATTTATGAGATTAAAATGAATTTATGTGAAGCTTGCTTCTC
AAACATCCCAAGCAAATGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR012866	DUF1644
IPR013083	Znf_RING/FYVE/PHD

Search form

LR48_mrnaVigan04g210400