LR48_mrnaVigan04g210400

Transcript Overview
NameLR48_mrnaVigan04g210400
Unique NameLR48_mrnaVigan04g210400_Va_Jingnong6_v1.1
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length969
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_4-CM003374.1supercontigChr_4-CM003374.1:30220034..30221002 -Vigna angularis Jingnong 6 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna angularis Jingnong 6 genome v1.12020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.12020-05-21
BLAST: V. angularis Jingnong 6 genome v1.12020-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ascaR548Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR553Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
asasR212Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasL0113Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0368Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0422Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0840Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0856Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaiR647Cicer arietinum ICC 4958 genome v2Cicer arietinum
ascaiR667Cicer arietinum ICC 4958 genome v2Cicer arietinum
asccR0835Cajanus cajan Asha genome v1.0Cajanus cajan
ascrR634Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR640Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
aspsR537Pisum sativum Cameor genome v1aPisum sativum
aspsR548Pisum sativum Cameor genome v1aPisum sativum
aspsR578Pisum sativum Cameor genome v1aPisum sativum
aspvR591Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR644Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
asvuR532Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR538Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
astifR576Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR592Vicia faba cv. Tiffany genome v1.0Vicia faba
asvfhR590Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR606Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvrvR488Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR506Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvssR620Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR652Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvuaR489Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR512Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ascanR493Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR500Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Ca_09658.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
rna-KK1_003478Cajanus cajan Asha genome v1.0Cajanus cajan
Vfaba.Hedin2.R1.3g200560.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-TanjilR_07917Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-XM_014647086.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-XM_014643357.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
evm.model.Chr09.1686.1.62113178Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Phvul.001G058700.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
evm.model.Chr08.105.2.62113169Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-TanjilR_12526Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vfaba.Tiffany.R1.3g165560.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Phvul.009G100500.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Ca_10975Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vigun09g201600.2Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigun08g063700.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-XM_012715232.2Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
jg35844.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
LR48_mrnaVigan07g234700Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LR48_Vigan04g210400gene-LR48_Vigan04g210400_Va_Jingnong6_v1.1Vigna angularisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g210400LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1-proteinVigna angularispolypeptide
LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1Vigna angularispolypeptide


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1-start_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:30221000..30221002LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1-start_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:30221000..30221002Vigna angularisstart_codon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1-CDS-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:30220034..30221002LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1-CDS-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:30220034..30221002Vigna angularisCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:30220034..30221002LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:30220034..30221002Vigna angularisexon


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1-stop_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:30220034..30220036LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1-stop_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:30220034..30220036Vigna angularisstop_codon


Homology
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan04g210400 vs.
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012866Protein of unknown function DUF1644PFAMPF07800DUF1644coord: 15..165
e-value: 5.4E-59
score: 198.9
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 2..104
e-value: 4.8E-6
score: 27.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 234..249
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 223..249

Sequences
The following sequences are available for this feature:

mRNA sequence

>LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g210400; organism=Vigna angularis; type=mRNA; length=969bp
ATGGTAGTGCGCATGGAAGATGTTCTGTTGGATACCAGTTGGGAAGATGT
AATCTGCCCTATATGCTTGGAAGTTCCTCATAATAGTGTGCTCCTTCAGT
GTTCATCTTATGATAAGGGGTGCCGTCCTTTTGTATGTGACACAAGTCAA
TTGCACTCAAATTGTTTAGATCGTTTTAAAAGAACACAAATGTCCGATGC
AAATTCCGTGGCAAATAGTGACTCAGTGGTATCTGATTGTCAATACAATT
TAAGTTGTCCCTTGTGCAGAGGTGATGTTTCTGGATGGATTATAGTTGAT
AAAGCTCGTGTGCATCTTGATGAAAAGAAGCGTTGTTGTGATGAGCAGCA
ATGTGCATTTGTTGGAAGTTACTCCGAGCTGCAGAAACATGCTCAGCTGG
AACACCCTTATGGTTGTCCATCAAAAATTGATCCTGCCAGGCAGCTTGAT
TGGGAAAATTTTCAGCAGTCATCCGAGATTGTAGATGTTTTGAGCACTAT
TCATTCAGAAGTTCCACGTGGAGTGGTTTTAGGAGATTATGTGATTGAAT
ATGGGGATGATGATAGTGCAGATGATTTTGAGGACTTCCCTGGAGATGAA
GGTAACTGGTGGACCTCTTGTATTTTGTATAATGCCTTCAATAACTTTAG
AAGTTCTAGAAACCGAAGAAGGGCAAGAGCTGGTGATCCTAGTAGGGGTA
ATCGCCCTTTAAGCTCTGATACTTCAAATTCTGATGAAGGTTCTGTAGCA
TCTGTAGATTATGGCGAGTATAGGCTAGAAGAGATTGATGATGATTTTGT
TAGTTCAATTGGCCCTTTGAGGGGTGGCAATGGTTTTCGCAGGTGGGTAG
TATTTTTCCTTATTTTTGTTTTCAGTTTTGACATTTCTTTGCTTGTCTTT
CTGTTTAACATTTATGAGATTAAAATGAATTTATGTGAAGCTTGCTTCTC
AAACATCCCAAGCAAATGA
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protein sequence of LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1

>LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=322bp
MVVRMEDVLLDTSWEDVICPICLEVPHNSVLLQCSSYDKGCRPFVCDTSQ
LHSNCLDRFKRTQMSDANSVANSDSVVSDCQYNLSCPLCRGDVSGWIIVD
KARVHLDEKKRCCDEQQCAFVGSYSELQKHAQLEHPYGCPSKIDPARQLD
WENFQQSSEIVDVLSTIHSEVPRGVVLGDYVIEYGDDDSADDFEDFPGDE
GNWWTSCILYNAFNNFRSSRNRRRARAGDPSRGNRPLSSDTSNSDEGSVA
SVDYGEYRLEEIDDDFVSSIGPLRGGNGFRRWVVFFLIFVFSFDISLLVF
LFNIYEIKMNLCEACFSNIPSK
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mRNA from alignment at Chr_4-CM003374.1:30220034..30221002-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g210400; organism=Vigna angularis; type=mRNA; length=969bp; location=Sequence derived from: Chr_4-CM003374.1:30220034..30221002- (Vigna angularis
ATGGTAGTGCGCATGGAAGATGTTCTGTTGGATACCAGTTGGGAAGATGT
AATCTGCCCTATATGCTTGGAAGTTCCTCATAATAGTGTGCTCCTTCAGT
GTTCATCTTATGATAAGGGGTGCCGTCCTTTTGTATGTGACACAAGTCAA
TTGCACTCAAATTGTTTAGATCGTTTTAAAAGAACACAAATGTCCGATGC
AAATTCCGTGGCAAATAGTGACTCAGTGGTATCTGATTGTCAATACAATT
TAAGTTGTCCCTTGTGCAGAGGTGATGTTTCTGGATGGATTATAGTTGAT
AAAGCTCGTGTGCATCTTGATGAAAAGAAGCGTTGTTGTGATGAGCAGCA
ATGTGCATTTGTTGGAAGTTACTCCGAGCTGCAGAAACATGCTCAGCTGG
AACACCCTTATGGTTGTCCATCAAAAATTGATCCTGCCAGGCAGCTTGAT
TGGGAAAATTTTCAGCAGTCATCCGAGATTGTAGATGTTTTGAGCACTAT
TCATTCAGAAGTTCCACGTGGAGTGGTTTTAGGAGATTATGTGATTGAAT
ATGGGGATGATGATAGTGCAGATGATTTTGAGGACTTCCCTGGAGATGAA
GGTAACTGGTGGACCTCTTGTATTTTGTATAATGCCTTCAATAACTTTAG
AAGTTCTAGAAACCGAAGAAGGGCAAGAGCTGGTGATCCTAGTAGGGGTA
ATCGCCCTTTAAGCTCTGATACTTCAAATTCTGATGAAGGTTCTGTAGCA
TCTGTAGATTATGGCGAGTATAGGCTAGAAGAGATTGATGATGATTTTGT
TAGTTCAATTGGCCCTTTGAGGGGTGGCAATGGTTTTCGCAGGTGGGTAG
TATTTTTCCTTATTTTTGTTTTCAGTTTTGACATTTCTTTGCTTGTCTTT
CTGTTTAACATTTATGAGATTAAAATGAATTTATGTGAAGCTTGCTTCTC
AAACATCCCAAGCAAATGA
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Coding sequence (CDS) from alignment at Chr_4-CM003374.1:30220034..30221002-

>LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g210400_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g210400; organism=Vigna angularis; type=CDS; length=969bp; location=Sequence derived from: Chr_4-CM003374.1:30220034..30221002- (Vigna angularis
ATGGTAGTGCGCATGGAAGATGTTCTGTTGGATACCAGTTGGGAAGATGT
AATCTGCCCTATATGCTTGGAAGTTCCTCATAATAGTGTGCTCCTTCAGT
GTTCATCTTATGATAAGGGGTGCCGTCCTTTTGTATGTGACACAAGTCAA
TTGCACTCAAATTGTTTAGATCGTTTTAAAAGAACACAAATGTCCGATGC
AAATTCCGTGGCAAATAGTGACTCAGTGGTATCTGATTGTCAATACAATT
TAAGTTGTCCCTTGTGCAGAGGTGATGTTTCTGGATGGATTATAGTTGAT
AAAGCTCGTGTGCATCTTGATGAAAAGAAGCGTTGTTGTGATGAGCAGCA
ATGTGCATTTGTTGGAAGTTACTCCGAGCTGCAGAAACATGCTCAGCTGG
AACACCCTTATGGTTGTCCATCAAAAATTGATCCTGCCAGGCAGCTTGAT
TGGGAAAATTTTCAGCAGTCATCCGAGATTGTAGATGTTTTGAGCACTAT
TCATTCAGAAGTTCCACGTGGAGTGGTTTTAGGAGATTATGTGATTGAAT
ATGGGGATGATGATAGTGCAGATGATTTTGAGGACTTCCCTGGAGATGAA
GGTAACTGGTGGACCTCTTGTATTTTGTATAATGCCTTCAATAACTTTAG
AAGTTCTAGAAACCGAAGAAGGGCAAGAGCTGGTGATCCTAGTAGGGGTA
ATCGCCCTTTAAGCTCTGATACTTCAAATTCTGATGAAGGTTCTGTAGCA
TCTGTAGATTATGGCGAGTATAGGCTAGAAGAGATTGATGATGATTTTGT
TAGTTCAATTGGCCCTTTGAGGGGTGGCAATGGTTTTCGCAGGTGGGTAG
TATTTTTCCTTATTTTTGTTTTCAGTTTTGACATTTCTTTGCTTGTCTTT
CTGTTTAACATTTATGAGATTAAAATGAATTTATGTGAAGCTTGCTTCTC
AAACATCCCAAGCAAATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR012866DUF1644
IPR013083Znf_RING/FYVE/PHD