LR48_mrnaVigan04g215300
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Homology
BLAST of LR48_mrnaVigan04g215300 vs. DB:Swiss
Match: DXS_ARATH (1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DXS PE=1 SV=2) HSP 1 Score: 788.104 bits (2034), Expect = 0.000e+0 Identity = 393/640 (61.41%), Postives = 488/640 (76.25%), Query Frame = 1 Query: 4 VENPLCLKNLSIKELKQLAVEIRSDLSSIMSRTQISAKASMAVVELTVAIHYVFNAPVDKILWDVGDQTYAHKILTGRRSLMTTVKRKNGLSGFTSRFESEYDAFGAGHGCNSISAGLGMAVARDIKGRQERVVAVISNWTTMAGQAYEAMSNAGYLDSNMVVILNDSRHSLLPKIE-ESPKTSVNAXXXXXXXXXXXXXFRRFREAAKGVTKRIG--MHELAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNVEDLICVLQEVASLDSMGPVLVHVITDESQGDENNQKSDITDMKQDGGISFDPFKYDTLDNVVRPQTYGDCFVETLVAEAEKDKDIVVVHAGMAMESSLELFQEKFPDRIFDVGMAEQHAVTFASGLACGGLKPFCLIPSSFLQRAYDQVIHDVDQQRIPVRFVITSAGLVGSDGPLQCGAFDITFMSCLPNMIVMAPSDEVELMHMVATATHINDQPACFRYPRGALVGKGYTGGD-GIPIKIGRGRILVEGKDVAFLGYGSMVQNCLKAHSLLAKLGIEVTVADARFCKPLDIKLLRQLCKHHSFLITVEEGSIGGFGSHVAEFIAVNGLLDGRIKWRPIVLPDRYIEHASPNEQLDQAGLSGHHIAATALSLLGRTREAL 1911
+ P+ +KNLS+KELKQL+ E+RSD+ +S+T +S+ VVELTVA+HY+FN P DKILWDVG Q+Y HKILTGRR M T+++ NGLSGFT R ESE+D FG GH +ISAGLGMAV RD+KG+ VVAVI + AGQAYEAM+NAGYLDS+M+VILND++ LP + P V ALSS LS+LQS+ + R RE AKG+TK+IG MH+LAAKVDEYARGMI GS+LFEELGLYYIGPVDGHN++DL+ +L+EV S + GPVL+HV+T++ +G +++D K G + FDP + Q+Y F E LVAEAE DKD+V +HA M + L LFQ +FP R FDVG+AEQHAVTFA+GLAC GLKPFC I SSF+QRAYDQV+HDVD Q++PVRF + AGLVG+DGP CGAFD+TFM+CLPNMIVMAPSDE +L +MVATA I+D+P+CFRYPRG +G G+ G+PI+IG+GRIL EG+ VA LGYGS VQ+CL A +L + G+ VTVADARFCKPLD L+R L K H LITVEEGSIGGFGSHV +F+A++GLLDG++KWRP+VLPDRYI+H +P +QL +AGL HIAATAL+L+G REAL
Sbjct: 80 INYPIHMKNLSVKELKQLSDELRSDVIFNVSKTGGHLGSSLGVVELTVALHYIFNTPQDKILWDVGHQSYPHKILTGRRGKMPTMRQTNGLSGFTKRGESEHDCFGTGHSSTTISAGLGMAVGRDLKGKNNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPSPPVGALSSALSRLQSNPALRELREVAKGMTKQIGGPMHQLAAKVDEYARGMISGTGSSLFEELGLYYIGPVDGHNIDDLVAILKEVKSTRTTGPVLIHVVTEKGRGYPYAERADD---KYHGVVKFDPATGRQFKTTNKTQSYTTYFAEALVAEAEVDKDVVAIHAAMGGGTGLNLFQRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMACLPNMIVMAPSDEADLFNMVATAVAIDDRPSCFRYPRGNGIGVALPPGNKGVPIEIGKGRILKEGERVALLGYGSAVQSCLGAAVMLEERGLNVTVADARFCKPLDRALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGKLKWRPMVLPDRYIDHGAPADQLAEAGLMPSHIAATALNLIGAPREAL 716
BLAST of LR48_mrnaVigan04g215300 vs. DB:Swiss
Match: DXS_CAPAN (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annuum OX=4072 GN=TKT2 PE=2 SV=1) HSP 1 Score: 787.334 bits (2032), Expect = 0.000e+0 Identity = 399/643 (62.05%), Postives = 491/643 (76.36%), Query Frame = 1 Query: 4 VENPLCLKNLSIKELKQLAVEIRSDLSSIMSRTQISAKASMAVVELTVAIHYVFNAPVDKILWDVGDQTYAHKILTGRRSLMTTVKRKNGLSGFTSRFESEYDAFGAGHGCNSISAGLGMAVARDIKGRQERVVAVISNWTTMAGQAYEAMSNAGYLDSNMVVILNDSRHSLLPKIE-ESPKTSVNAXXXXXXXXXXXXXFRRFREAAKGVTKRIG--MHELAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNVEDLICVLQEVASLDSMGPVLVHVITDESQGDENNQKSDITDMKQDGGISFDPFKYDTLDNVVRPQTYGDCFVETLVAEAEKDKDIVVVHAGMAMESSLELFQEKFPDRIFDVGMAEQHAVTFASGLACGGLKPFCLIPSSFLQRAYDQVIHDVDQQRIPVRFVITSAGLVGSDGPLQCGAFDITFMSCLPNMIVMAPSDEVELMHMVATATHINDQPACFRYPRGALVGKGYTGGD-GIPIKIGRGRILVEGKDVAFLGYGSMVQNCLKAHSLLAKLGIEVTVADARFCKPLDIKLLRQLCKHHSFLITVEEGSIGGFGSHVAEFIAVNGLLDGRIKWRPIVLPDRYIEHASPNEQLDQAGLSGHHIAATALSLLGRTREALQFM 1920
+ P+ +KNLS+KELKQLA E+RSD +S+T +S+ VVELTVA+HYVFNAP D+ILWDVG Q+Y HKILTGRR M+T+++ NGL+GFT R ESEYD FG GH +ISAGLGMAV RD+KGR V+AVI + AGQAYEAM+NAGYLDS+M+VILND+R LP + P V ALSS LS+LQS++ R RE AKGVTK+IG MHELAAKVDEYARGMI GSTLFEELGLYYIGPVDGHN++DLI +L+EV S + GPVL+HV+T++ +G +++ K G FDP + Q+Y F E L+AEAE DKDIV +HA M + + LF +FP R FDVG+AEQHAVTFA+GLAC GLKPFC I SSF+QRAYDQV+HDVD Q++PVRF + AGLVG+DGP CGAFD+TFM+CLPNM+VMAPSDE EL H+VATA I+D+P+CFRYPRG +G G+ GIP+++G+GRILVEG+ VA LGYGS VQNCL A S+L G++VTVADARFCKPLD L+R L K H L+TVE+GSIGGFGSHV +F+A++GLLDG++KWRPIVLPDRYI+H SP +QL +AGL+ HIAAT ++LG+TREAL+ M
Sbjct: 79 INYPIHMKNLSLKELKQLADELRSDTIFNVSKTGGHLGSSLGVVELTVALHYVFNAPQDRILWDVGHQSYPHKILTGRREKMSTLRQTNGLAGFTKRSESEYDCFGTGHSSTTISAGLGMAVGRDLKGRNNNVIAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNRQVSLPTATLDGPVPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLISILKEVRSTKTTGPVLIHVVTEKGRGYPYAERAAD---KYHGVAKFDPATGKQFKGSAKTQSYTTYFAEALIAEAEADKDIVAIHAAMGGGTGMNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMACLPNMVVMAPSDEAELFHIVATAAAIDDRPSCFRYPRGNGIGVELPAGNKGIPLEVGKGRILVEGERVALLGYGSAVQNCLAAASVLESRGLQVTVADARFCKPLDRALIRSLAKSHEVLVTVEKGSIGGFGSHVVQFMALDGLLDGKLKWRPIVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNILGQTREALEVM 718
BLAST of LR48_mrnaVigan04g215300 vs. DB:Swiss
Match: DXS1_ORYSJ (1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CLA1 PE=2 SV=2) HSP 1 Score: 777.319 bits (2006), Expect = 0.000e+0 Identity = 389/643 (60.50%), Postives = 486/643 (75.58%), Query Frame = 1 Query: 4 VENPLCLKNLSIKELKQLAVEIRSDLSSIMSRTQISAKASMAVVELTVAIHYVFNAPVDKILWDVGDQTYAHKILTGRRSLMTTVKRKNGLSGFTSRFESEYDAFGAGHGCNSISAGLGMAVARDIKGRQERVVAVISNWTTMAGQAYEAMSNAGYLDSNMVVILNDSRHSLLPKIE-ESPKTSVNAXXXXXXXXXXXXXFRRFREAAKGVTKRIG--MHELAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNVEDLICVLQEVASLDSMGPVLVHVITDESQGDENNQKSDITDMKQDGGISFDPFKYDTLDNVVRPQTYGDCFVETLVAEAEKDKDIVVVHAGMAMESSLELFQEKFPDRIFDVGMAEQHAVTFASGLACGGLKPFCLIPSSFLQRAYDQVIHDVDQQRIPVRFVITSAGLVGSDGPLQCGAFDITFMSCLPNMIVMAPSDEVELMHMVATATHINDQPACFRYPRGALVGKGYTGG-DGIPIKIGRGRILVEGKDVAFLGYGSMVQNCLKAHSLLAKLGIEVTVADARFCKPLDIKLLRQLCKHHSFLITVEEGSIGGFGSHVAEFIAVNGLLDGRIKWRPIVLPDRYIEHASPNEQLDQAGLSGHHIAATALSLLGRTREALQFM 1920
V P+ +KNLS+KEL+QLA E+RSD+ +S+T +S+ VVELTVA+HYVFN P DKILWDVG Q+Y HKILTGRR M T+++ NGLSGFT R ESEYD+FG GH +ISA LGMAV RD+KG + VVAVI + AGQAYEAM+NAGYLDS+M+VILND++ LP + P V ALSS LSKLQSS+ R RE AKGVTK+IG +HELAAKVDEYARGMI GSTLFEELGLYYIGPVDGHN++DLI +L+EV S + GPVL+HV+T++ +G +++ K G FDP + + +Y + F E L+AEAE+D +V +HA M + L F +FP+R FDVG+AEQHAVTFA+GLAC GLKPFC I SSFLQR YDQV+HDVD Q++PVRF + AGLVG+DGP CGAFD+T+M+CLPNM+VMAPSDE EL HMVATA I+D+P+CFRYPRG +G G+P+++G+GR+L+EG+ VA LGYGS VQ CL A SL+ + G++VTVADARFCKPLD L+R+L H L+TVEEGSIGGFGSHVA+F+A++GLLDG++KWRP+VLPDRYI+H SP +QL +AGL+ HIAAT ++LG+ REAL M
Sbjct: 76 VNYPIHMKNLSLKELQQLADELRSDVIFHVSKTGGHLGSSLGVVELTVALHYVFNTPQDKILWDVGHQSYPHKILTGRRDKMPTMRQTNGLSGFTKRSESEYDSFGTGHSSTTISAALGMAVGRDLKGGKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPPVGALSSALSKLQSSRPLRELREVAKGVTKQIGGSVHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLITILREVKSTKTTGPVLIHVVTEKGRGYPYAERAAD---KYHGVAKFDPATGKQFKSPAKTLSYTNYFAEALIAEAEQDNRVVAIHAAMGGGTGLNYFLRRFPNRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELCHMVATAAAIDDRPSCFRYPRGNGIGVPLPPNYKGVPLEVGKGRVLLEGERVALLGYGSAVQYCLAAASLVERHGLKVTVADARFCKPLDQTLIRRLASSHEVLLTVEEGSIGGFGSHVAQFMALDGLLDGKLKWRPLVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNVLGQAREALAIM 715
BLAST of LR48_mrnaVigan04g215300 vs. DB:Swiss
Match: DXS2_ORYSJ (Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0190000 PE=2 SV=1) HSP 1 Score: 736.487 bits (1900), Expect = 0.000e+0 Identity = 366/642 (57.01%), Postives = 469/642 (73.05%), Query Frame = 1 Query: 4 VENPLCLKNLSIKELKQLAVEIRSDLSSIMSRTQISAKASMAVVELTVAIHYVFNAPVDKILWDVGDQTYAHKILTGRRSLMTTVKRKNGLSGFTSRFESEYDAFGAGHGCNSISAGLGMAVARDIKGRQERVVAVISNWTTMAGQAYEAMSNAGYLDSNMVVILNDSRHSLLPKIE-ESPKTSVNAXXXXXXXXXXXXXFRRFREAAKGVTKRIG--MHELAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNVEDLICVLQEVASLDSMGPVLVHVITDESQGDENNQKSDITDMKQDGGISFDPFKYDTLDNVVRPQTYGDCFVETLVAEAEKDKDIVVVHAGMAMESSLELFQEKFPDRIFDVGMAEQHAVTFASGLACGGLKPFCLIPSSFLQRAYDQVIHDVDQQRIPVRFVITSAGLVGSDGPLQCGAFDITFMSCLPNMIVMAPSDEVELMHMVATATHINDQPACFRYPRGALVGKGYTGG-DGIPIKIGRGRILVEGKDVAFLGYGSMVQNCLKAHSLLAKLGIEVTVADARFCKPLDIKLLRQLCKHHSFLITVEEGSIGGFGSHVAEFIAVNGLLDGRIKWRPIVLPDRYIEHASPNEQLDQAGLSGHHIAATALSLLGRTREALQF 1917
V P+ +KNLS EL+QLA E+R+++ +S+T +S+ VVEL VA+H+VF+ P DKI+WDVG Q Y HKILTGRRS M T+++ +GL+GF R ES +DAFGAGH SISA LGMAVARD+ G++ V++VI + AGQAYEAM+N+GYLDSNM+V+LND++ LP + P T V ALS L+KLQSS RR REAAK VTK+IG HE+AAKVDEYARGM+ GSTLFEELGLYYIGPVDGH+V+DL+ + +V S+ + GPVLVH++T++ +G ++ + G + FDP + +Y F E L+ EAE D +V +HA M + L F ++FP+R FDVG+AEQHAVTFA+GLA GLKPFC I SSFLQR YDQV+HDVD QR+PVRF + AGLVG+DGP CGAFD+ +M+CLPNM+VMAP+DE ELMHMVATA I+D+P+CFR+PRG +G G P+++G+GR+LV G VA LGYG+MVQ C+KA L + GI VTVADARFCKPLD L+R+L H L+TVEEGSIGGFGSHVA +++++GLLDG +K R + LPDRYI+H +P +QL++AGL+ HIAAT LSLLGR EALQ
Sbjct: 74 VNYPVHMKNLSTPELEQLAAELRAEIVHTVSKTGGHLSSSLGVVELAVALHHVFDTPEDKIIWDVGHQAYPHKILTGRRSRMHTIRQTSGLAGFPKRDESAHDAFGAGHSSTSISAALGMAVARDLLGKKNHVISVIGDGAMTAGQAYEAMNNSGYLDSNMIVVLNDNKQVSLPTATLDGPATPVGALSKALTKLQSSTKLRRLREAAKTVTKQIGGQAHEVAAKVDEYARGMVSASGSTLFEELGLYYIGPVDGHSVDDLVAIFNKVKSMPAPGPVLVHIVTEKGKG---YPPAEAAADRMHGVVKFDPTTGRQFKSKCSTLSYTQYFAEALIREAEADDKVVGIHAAMGGGTGLNYFHKRFPERCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRGYDQVVHDVDLQRLPVRFAMDRAGLVGADGPTHCGAFDVAYMACLPNMVVMAPADEAELMHMVATAAAIDDRPSCFRFPRGNGIGAVLPPNHKGTPLEVGKGRVLVGGNRVALLGYGTMVQACMKAAEALKEHGIYVTVADARFCKPLDTGLIRELAAEHEVLVTVEEGSIGGFGSHVAHYLSLSGLLDGPLKLRSMFLPDRYIDHGAPVDQLEEAGLTPRHIAATVLSLLGRPLEALQL 712
BLAST of LR48_mrnaVigan04g215300 vs. DB:Swiss
Match: DXS_RHOPB (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain BisB18) OX=316056 GN=dxs PE=3 SV=1) HSP 1 Score: 575.089 bits (1481), Expect = 0.000e+0 Identity = 303/635 (47.72%), Postives = 416/635 (65.51%), Query Frame = 1 Query: 4 VENPLCLKNLSIKELKQLAVEIRSDLSSIMSRTQISAKASMAVVELTVAIHYVFNAPVDKILWDVGDQTYAHKILTGRRSLMTTVKRKNGLSGFTSRFESEYDAFGAGHGCNSISAGLGMAVARDIKGRQERVVAVISNWTTMAGQAYEAMSNAGYLDSNMVVILNDSRHSLLPKIEESPKTSVNAXXXXXXXXXXXXXFRRFREAAKGVTKRIG--MHELAAKVDEYARG-MIGPQGSTLFEELGLYYIGPVDGHNVEDLICVLQEVASLDSMGPVLVHVITDESQGDENNQKSDITDMKQDGGISFDPFKYDTLDNVVRPQTYGDCFVETLVAEAEKDKDIVVVHAGMAMESSLELFQEKFPDRIFDVGMAEQHAVTFASGLACGGLKPFCLIPSSFLQRAYDQVIHDVDQQRIPVRFVITSAGLVGSDGPLQCGAFDITFMSCLPNMIVMAPSDEVELMHMVATATHINDQPACFRYPRGALVGKGYTGGD-GIPIKIGRGRILVEGKDVAFLGYGSMVQNCLKAHSLLAKLGIEVTVADARFCKPLDIKLLRQLCKHHSFLITVEEGSIGGFGSHVAEFIAVNGLLDGRIKWRPIVLPDRYIEHASPNEQLDQAGLSGHHIAATALSLLGR 1896
+ P L+ L I +++Q+A E+R + +S T A + VVELT AIHYVF+ P D+++WDVG Q Y HKILTGRR + T++ GLSGFT R ES+YD FGA H SISAGLGMAVARD+ G + V+AVI + + AG AYEAM+NAG ++S ++VILND+ S+ P V A+S+ LS+L S K++R REA K + K + + + AA+ +EY+RG M+G G TLFEELG YY+GPVDGHN++ L+ +LQ V D+ GP L+HV+T + +G ++ K + FD +Y + F ++LV EA+KD IV + A M + +++F++ FP R FDVG+AEQHAVTFA+GLA G KPFC I S+FLQR YDQV+HDV Q +PVRF I AGLVG+DG G+FD F+ CLPNM++MA SDE EL+HMVAT IND+P+ RYPRG G+G + GI ++IG+GRI+ EG +A L +G+ + C KA LA LG+ T+ADARF KPLD++L+ +L + H L+T+EEGSIGGFGSHV + +A +G+LDG ++ R +VLPD +++H +P +AGL I LG+
Sbjct: 13 IRTPADLRKLRIDQVRQVADELRQETIEAVSVTGGHFGAGLGVVELTTAIHYVFDTPRDRLIWDVGHQAYPHKILTGRRDRIRTLRTGGGLSGFTKRTESDYDPFGAAHSSTSISAGLGMAVARDLAGGKNNVIAVIGDGSISAGMAYEAMNNAGAMNSRLIVILNDNNMSIAP--------PVGAMSAYLSRLYSGKTYRTLREAGKQIGKHLPKLIADRAARAEEYSRGFMMG--GGTLFEELGFYYVGPVDGHNLDHLLPILQNVRDADT-GPFLIHVVTQKGKG---YGPAEAASDKYHAVVKFDIATGAQAKAKSNAPSYQNVFGQSLVKEAQKDDKIVGITAAMPSGTGIDIFEKAFPTRTFDVGIAEQHAVTFAAGLAAEGYKPFCAIYSTFLQRGYDQVVHDVAIQSLPVRFAIDRAGLVGADGATHAGSFDNAFLGCLPNMVIMAASDEAELVHMVATQVAINDRPSAVRYPRGE--GRGVEMPEVGIALEIGKGRIVREGNKIALLSFGTRLAECEKAADELATLGLSTTIADARFMKPLDVELVLKLARDHEILLTIEEGSIGGFGSHVMQTLAEHGMLDGEVRMRSLVLPDEFMDHDTPTAMYARAGLDAKGIVKKVFEALGK 631
BLAST of LR48_mrnaVigan04g215300 vs. DB:Swiss
Match: DXS_RHOPS (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain BisB5) OX=316057 GN=dxs PE=3 SV=1) HSP 1 Score: 574.318 bits (1479), Expect = 0.000e+0 Identity = 303/639 (47.42%), Postives = 414/639 (64.79%), Query Frame = 1 Query: 4 VENPLCLKNLSIKELKQLAVEIRSDLSSIMSRTQISAKASMAVVELTVAIHYVFNAPVDKILWDVGDQTYAHKILTGRRSLMTTVKRKNGLSGFTSRFESEYDAFGAGHGCNSISAGLGMAVARDIKGRQERVVAVISNWTTMAGQAYEAMSNAGYLDSNMVVILNDSRHSLLPKIEESPKTSVNAXXXXXXXXXXXXXFRRFREAAKGVTKRIG--MHELAAKVDEYARG-MIGPQGSTLFEELGLYYIGPVDGHNVEDLICVLQEVASLDSMGPVLVHVITDESQGDENNQKSDITDMKQDGGISFDPFKYDTLDNVVRPQTYGDCFVETLVAEAEKDKDIVVVHAGMAMESSLELFQEKFPDRIFDVGMAEQHAVTFASGLACGGLKPFCLIPSSFLQRAYDQVIHDVDQQRIPVRFVITSAGLVGSDGPLQCGAFDITFMSCLPNMIVMAPSDEVELMHMVATATHINDQPACFRYPRGALVGKGYTGGD-GIPIKIGRGRILVEGKDVAFLGYGSMVQNCLKAHSLLAKLGIEVTVADARFCKPLDIKLLRQLCKHHSFLITVEEGSIGGFGSHVAEFIAVNGLLDGRIKWRPIVLPDRYIEHASPNEQLDQAGLSGHHIAATALSLLGRTREA 1908
+ P L+ L + +++Q+A E+R + +S T A + VVELT AIHYVF+ P D+++WDVG Q Y HKILTGRR + T++ GLSGFT R ES+YD FGA H SISAGLGMAVARD+ G V+AVI + + AG AYEAM+NAG ++S ++VILND+ S+ P V A+S+ LS+L S K++R REA K + K + + + AA+ +EY+RG M+G G TLFEELG YY+GP+DGHN++ L+ +LQ V ++ GP L+HV+T + +G ++ K + FD +Y + F ++LV EA KD IV + A M + +++F++ FP R FDVG+AEQHAVTFA+GLA G KPFC I S+FLQRAYDQV+HDV Q +PVRF I AGLVG+DG G+FD ++ CLPNM++MA SDE EL+HMVAT IND+P+ RYPRG G+G D G+P++IG+GR++ +G VA L +G+ + C KA LA LG+ TVADARF KPLD+ L+ +L H LIT+EEGSIGGFG+HV + +A +G LDG +K R +VLPD +++H +P AGL I LG+ +A
Sbjct: 10 IRTPEDLRKLRVDQVQQVADELRQETIDAVSVTGGHFGAGLGVVELTTAIHYVFDTPRDRLIWDVGHQAYPHKILTGRRDRIRTLRTAGGLSGFTKRTESDYDPFGAAHSSTSISAGLGMAVARDLAGGNNNVIAVIGDGSISAGMAYEAMNNAGAMNSRLIVILNDNNMSIAP--------PVGAMSAYLSRLYSGKTYRSLREAGKQIGKHLPKLIADRAARAEEYSRGFMMG--GGTLFEELGFYYVGPIDGHNLDHLLPILQNVRDAET-GPFLIHVVTQKGKG---YAPAEAASDKYHAVVKFDIATGTQAKAKSNAPSYQNVFGQSLVKEAAKDDKIVGITAAMPSGTGIDIFEKAFPARTFDVGIAEQHAVTFAAGLATEGYKPFCAIYSTFLQRAYDQVVHDVALQSLPVRFAIDRAGLVGADGATHAGSFDNAYLGCLPNMVIMAASDEAELVHMVATQVAINDRPSALRYPRGE--GRGVEMPDVGVPLEIGKGRVIRQGNKVALLSFGTRLAECEKAAEELAALGLSTTVADARFMKPLDVDLVLKLANEHEILITIEEGSIGGFGTHVMQTLAEHGKLDGEVKMRAMVLPDVFLDHDTPTAMYANAGLDAKAIVKKVFEALGKEHKA 632
BLAST of LR48_mrnaVigan04g215300 vs. DB:Swiss
Match: DXS_BRADU (1-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) OX=224911 GN=dxs PE=3 SV=1) HSP 1 Score: 569.311 bits (1466), Expect = 0.000e+0 Identity = 300/635 (47.24%), Postives = 416/635 (65.51%), Query Frame = 1 Query: 4 VENPLCLKNLSIKELKQLAVEIRSDLSSIMSRTQISAKASMAVVELTVAIHYVFNAPVDKILWDVGDQTYAHKILTGRRSLMTTVKRKNGLSGFTSRFESEYDAFGAGHGCNSISAGLGMAVARDIKGRQERVVAVISNWTTMAGQAYEAMSNAGYLDSNMVVILNDSRHSLLPKIEESPKTSVNAXXXXXXXXXXXXXFRRFREAAKGVTKRIG--MHELAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNVEDLICVLQEVASLDSMGPVLVHVITDESQGDENNQKSDITDMKQDGGISFDPFKYDTLDNVVRPQTYGDCFVETLVAEAEKDKDIVVVHAGMAMESSLELFQEKFPDRIFDVGMAEQHAVTFASGLACGGLKPFCLIPSSFLQRAYDQVIHDVDQQRIPVRFVITSAGLVGSDGPLQCGAFDITFMSCLPNMIVMAPSDEVELMHMVATATHINDQPACFRYPRGALVGKGYTGGD-GIPIKIGRGRILVEGKDVAFLGYGSMVQNCLKAHSLLAKLGIEVTVADARFCKPLDIKLLRQLCKHHSFLITVEEGSIGGFGSHVAEFIAVNGLLD-GRIKWRPIVLPDRYIEHASPNEQLDQAGLSGHHIAATALSLLGR 1896
+ P L+ L I++++Q+A E+R + +S T A + VVELT AIHYVF+ P D+++WDVG Q Y HKILTGRR + T++ GLSGFT R ES+YD FGA H SISAGLGMAVARD+ G + V+AVI + AG AYEAM+NAG ++S ++VILND+ S+ P V A+S+ LS+L S K++R REAAK + KR+ + A +V+EY+RG + G TLFEELG YY+GP+DGHN++ L+ VL+ V ++ GP+LVHV+T + +G ++ + K + FD Y + F ++LV EA+KD+ IV + A M + +++F + FPDR FDVG+AEQHAVTFA+GLA G KPFC I S+FLQR YDQ++HDV Q +PVRF I AGLVG+DG G+FD ++ CLPNM++MA +DE EL+HMVAT I+D+P+ RYPRG G+G + GIP++IG+GR++ +G +A L +G+ + C KA LA G+ T+ADARF KPLD +L+ +L + H LIT+EEGS+GGFGSHVA+F+ G LD G +K+R +VLPD + +H +P +AGL I A LG+
Sbjct: 32 IRTPDDLRKLKIEQVRQVADELRQETIDAVSVTGGHFGAGLGVVELTTAIHYVFDTPRDRLIWDVGHQAYPHKILTGRRDRIRTLRTGGGLSGFTKRSESDYDPFGAAHSSTSISAGLGMAVARDLSGGKNNVIAVIGDGAMSAGMAYEAMNNAGAMNSRLIVILNDNDMSIAP--------PVGAMSAYLSRLYSGKTYRTLREAAKQINKRLPKIIANRANRVEEYSRGFM-MDGGTLFEELGFYYVGPIDGHNLDHLLPVLKNVRDMEE-GPILVHVVTQKGKG---YGPAEASADKYHAVVKFDVATGTQAKAKPNAPAYQNVFGQSLVKEAQKDEKIVAITAAMPSGTGVDIFNKAFPDRTFDVGIAEQHAVTFAAGLASEGYKPFCAIYSTFLQRGYDQIVHDVAIQNLPVRFAIDRAGLVGADGATHAGSFDNAYLGCLPNMVIMAAADEAELVHMVATQVAIDDRPSSLRYPRGE--GRGIEMPEVGIPLEIGKGRMIRQGSKIALLSFGTRLAECEKAADELAAHGLSTTIADARFMKPLDTELVLKLARDHEILITIEEGSVGGFGSHVAQFLTDQGALDSGMVKFRTMVLPDVFQDHDTPAAMYARAGLDAKGIVAKVFEALGK 651
BLAST of LR48_mrnaVigan04g215300 vs. DB:Swiss
Match: DXS_RHOP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain HaA2) OX=316058 GN=dxs PE=3 SV=1) HSP 1 Score: 568.54 bits (1464), Expect = 0.000e+0 Identity = 301/639 (47.10%), Postives = 412/639 (64.48%), Query Frame = 1 Query: 4 VENPLCLKNLSIKELKQLAVEIRSDLSSIMSRTQISAKASMAVVELTVAIHYVFNAPVDKILWDVGDQTYAHKILTGRRSLMTTVKRKNGLSGFTSRFESEYDAFGAGHGCNSISAGLGMAVARDIKGRQERVVAVISNWTTMAGQAYEAMSNAGYLDSNMVVILNDSRHSLLPKIEESPKTSVNAXXXXXXXXXXXXXFRRFREAAKGVTKRIG--MHELAAKVDEYARG-MIGPQGSTLFEELGLYYIGPVDGHNVEDLICVLQEVASLDSMGPVLVHVITDESQGDENNQKSDITDMKQDGGISFDPFKYDTLDNVVRPQTYGDCFVETLVAEAEKDKDIVVVHAGMAMESSLELFQEKFPDRIFDVGMAEQHAVTFASGLACGGLKPFCLIPSSFLQRAYDQVIHDVDQQRIPVRFVITSAGLVGSDGPLQCGAFDITFMSCLPNMIVMAPSDEVELMHMVATATHINDQPACFRYPRGALVGKGYTGGD-GIPIKIGRGRILVEGKDVAFLGYGSMVQNCLKAHSLLAKLGIEVTVADARFCKPLDIKLLRQLCKHHSFLITVEEGSIGGFGSHVAEFIAVNGLLDGRIKWRPIVLPDRYIEHASPNEQLDQAGLSGHHIAATALSLLGRTREA 1908
+ P L+ L I +++Q+A E+R + +S T A + VVELT AIHYVF+ P D+++WDVG Q Y HKILTGRR + T++ GLSGFT R ES+YD FGA H SISAGLGMAVARD+ G V+AVI + + AG AYEAM+NAG ++S ++VILND+ S+ P V A+S+ LS+L S K++R REA K + K + + + AA+ +EY+RG M+G G TLFEELG YY+GP+DGHN++ L+ +LQ V ++ GP L+HV+T + +G ++ K + FD +Y + F ++LV EA KD +V + A M + +++F++ FPDR FDVG+AEQHAVTFA+GLA G KPFC I S+FLQR YDQ++HDV Q +PVRF I AGLVG+DG G+FD ++ CLPN ++MA SDE EL+HMVAT IND+P+ RYPRG G+G D G+P++IG+GR++ +G VA L +G+ + C KA LA LG+ TVADARF KPLD+ L+ +L H LIT+EEGSIGGFGSHV + ++ +G LDG +K R +VLPD +++H +P AGL I LG+ A
Sbjct: 10 IRTPDDLRKLRIDQVQQVADELRQETIDAVSVTGGHFGAGLGVVELTTAIHYVFDTPRDRLIWDVGHQAYPHKILTGRRDRIRTLRTAGGLSGFTKRTESDYDPFGAAHSSTSISAGLGMAVARDLAGGTNNVIAVIGDGSISAGMAYEAMNNAGAMNSRLIVILNDNNMSIAP--------PVGAMSAYLSRLYSGKTYRSLREAGKQIGKHLPKLIADRAARAEEYSRGFMMG--GGTLFEELGFYYVGPIDGHNLDHLLPILQNVRDAET-GPFLIHVVTQKGKG---YAPAEAASDKYHAVVKFDIATGTQAKAKSNAPSYQNVFGQSLVKEAAKDDKVVGITAAMPSGTGIDIFEKAFPDRTFDVGIAEQHAVTFAAGLATEGFKPFCAIYSTFLQRGYDQIVHDVAIQSLPVRFAIDRAGLVGADGATHAGSFDNAYLGCLPNFVIMAASDEAELVHMVATQVAINDRPSAVRYPRGE--GRGVEMPDVGVPLEIGKGRVIRQGNKVALLSFGTRLAECEKAAEELATLGLSTTVADARFMKPLDVDLVIKLANEHEILITIEEGSIGGFGSHVMQTLSDHGKLDGEVKMRAMVLPDVFLDHDTPAAMYAAAGLDAKAIVKKVFEALGKEHAA 632
BLAST of LR48_mrnaVigan04g215300 vs. DB:Swiss
Match: DXS_RHOP5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain BisA53) OX=316055 GN=dxs PE=3 SV=1) HSP 1 Score: 568.155 bits (1463), Expect = 0.000e+0 Identity = 300/637 (47.10%), Postives = 415/637 (65.15%), Query Frame = 1 Query: 4 VENPLCLKNLSIKELKQLAVEIRSDLSSIMSRTQISAKASMAVVELTVAIHYVFNAPVDKILWDVGDQTYAHKILTGRRSLMTTVKRKNGLSGFTSRFESEYDAFGAGHGCNSISAGLGMAVARDIKGRQERVVAVISNWTTMAGQAYEAMSNAGYLDSNMVVILNDSRHSLLPKIEESPKTSVNAXXXXXXXXXXXXXFRRFREAAKGVTKRIG--MHELAAKVDEYARG-MIGPQGSTLFEELGLYYIGPVDGHNVEDLICVLQEVASLDSMGPVLVHVITDESQGDENNQKSDITDMKQDGGISFDPFKYDTLDNVVRPQTYGDCFVETLVAEAEKDKDIVVVHAGMAMESSLELFQEKFPDRIFDVGMAEQHAVTFASGLACGGLKPFCLIPSSFLQRAYDQVIHDVDQQRIPVRFVITSAGLVGSDGPLQCGAFDITFMSCLPNMIVMAPSDEVELMHMVATATHINDQPACFRYPRGALVGKGYTGGD-GIPIKIGRGRILVEGKDVAFLGYGSMVQNCLKAHSLLAKLGIEVTVADARFCKPLDIKLLRQLCKHHSFLITVEEGSIGGFGSHVAEFIAVNGLLDGRIKWRPIVLPDRYIEHASPNEQLDQAGLSGHHIAATALSLLGRTR 1902
+ P L+ L I +++Q+A E+R + +S T A + VVELT AIHYVF+ P D+++WDVG Q Y HKILTGRR + T++ GLSGFT R ES++D FGAGH SISAGLGMAVA D+ G + V+AVI + + AG AYEAM+NAG ++S ++VILND+ S+ P V A+S+ LS+L S K++R REA K + K + + + AA+ +EY+RG M+G G TLFEELG YY+GP+DGHN++ L+ +LQ V D+ GP L+HV+T + +G ++ K + FD +Y + F +LV EA+KD IV + A M + +++F++ FP R FDVG+AEQHAVTFA+GLA G KPFC I S+FLQR YDQ++HDV Q +PVRF I AGLVG+DG G+FD ++ CLPN ++MA SDE EL+HMVAT IND P+ RYPRG G+G + GIP++IG+GR++ +G +A L +G+ + C KA LA LG+ TVADARF KPLD++L+ +L + H LITVEEGSIGGFGSHV + +A +G+LDG ++ R +VLPD +++H +P +AGL I LG+ +
Sbjct: 13 IRTPDDLRKLRIDQVQQVADELRLETIDAVSVTGGHFGAGLGVVELTTAIHYVFDTPRDRLIWDVGHQAYPHKILTGRRDRIRTLRTGGGLSGFTKRTESDHDPFGAGHSSTSISAGLGMAVASDLAGTKNNVIAVIGDGSISAGMAYEAMNNAGAMNSRLIVILNDNNMSIAP--------PVGAMSAYLSRLYSGKTYRSLREAGKQIGKHLPKLIADRAARAEEYSRGFMMG--GGTLFEELGFYYVGPIDGHNLDHLLPILQNVRDADA-GPFLIHVVTQKGKG---YAPAEAAADKYHAVVKFDIATGTQAKTKSNAPSYQNVFGASLVKEAQKDDKIVGITAAMPSGTGIDIFEKAFPKRTFDVGIAEQHAVTFAAGLATEGFKPFCAIYSTFLQRGYDQIVHDVAIQNLPVRFAIDRAGLVGADGATHAGSFDNAYLGCLPNFVIMAASDEAELVHMVATQVAINDAPSAVRYPRGE--GRGVEMPEVGIPLEIGKGRVVRQGNKIALLSFGTRLAECEKAADELATLGLSTTVADARFMKPLDVELVLKLAREHEVLITVEEGSIGGFGSHVMQTLAEHGMLDGEVRMRSLVLPDEFMDHDTPAVMYARAGLDAKGIVKKVFEALGKDK 633
BLAST of LR48_mrnaVigan04g215300 vs. DB:Swiss
Match: DXS_RHOPT (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain TIE-1) OX=395960 GN=dxs PE=3 SV=1) HSP 1 Score: 566.229 bits (1458), Expect = 0.000e+0 Identity = 298/635 (46.93%), Postives = 420/635 (66.14%), Query Frame = 1 Query: 4 VENPLCLKNLSIKELKQLAVEIRSDLSSIMSRTQISAKASMAVVELTVAIHYVFNAPVDKILWDVGDQTYAHKILTGRRSLMTTVKRKNGLSGFTSRFESEYDAFGAGHGCNSISAGLGMAVARDIKGRQERVVAVISNWTTMAGQAYEAMSNAGYLDSNMVVILNDSRHSLLPKIEESPKTSVNAXXXXXXXXXXXXXFRRFREAAKGVTKRIG--MHELAAKVDEYARG-MIGPQGSTLFEELGLYYIGPVDGHNVEDLICVLQEVASLDSMGPVLVHVITDESQGDENNQKSDITDMKQDGGISFDPFKYDTLDNVVRPQTYGDCFVETLVAEAEKDKDIVVVHAGMAMESSLELFQEKFPDRIFDVGMAEQHAVTFASGLACGGLKPFCLIPSSFLQRAYDQVIHDVDQQRIPVRFVITSAGLVGSDGPLQCGAFDITFMSCLPNMIVMAPSDEVELMHMVATATHINDQPACFRYPRGALVGKGYTGGD-GIPIKIGRGRILVEGKDVAFLGYGSMVQNCLKAHSLLAKLGIEVTVADARFCKPLDIKLLRQLCKHHSFLITVEEGSIGGFGSHVAEFIAVNGLLDGRIKWRPIVLPDRYIEHASPNEQLDQAGLSGHHIAATALSLLGR 1896
+ P L+ L I +++Q+A E+R + +S T A + VVELT A+HYVF+ P D+++WDVG Q Y HKILTGRR + T++ GLSGFT R ES++D FGAGH SISAGLGMAVA ++ G++ V+AVI + + AG AYEAM+NAG ++S ++VILND+ S+ P V A+S+ LS+L S K++R REA K + K + + + AA+ +EY+RG M+G G TLFEELG YY+GPVDGHN++ L+ +LQ V D+ GP L+HV+T + +G ++ K + FD +Y + F ++LV EA+KD IV + A M + +++F++ FP R FDVG+AEQHAVTFA+GLA G KPFC I S+FLQRAYDQ++HDV Q++PVRF I AGLVG+DG G+FD ++ CLPNM++MA +DE EL+HMVAT I+D+P+ RYPRG G+G + GIP++IG+GR++ +G VA L +G+ + KA LA LG+ TVADARF KPLD++L+ +L + H L+T+EEGSIGGFGSHV + +A +G+LDG +K R +VLPD +++H +P +AGL I +LG+
Sbjct: 13 IRTPEDLRKLRIDQVRQVADELRLETIDAVSVTGGHFGAGLGVVELTTALHYVFDTPRDRLIWDVGHQAYPHKILTGRRDRIRTLRTGGGLSGFTKRTESDHDPFGAGHSSTSISAGLGMAVASELAGKKNNVIAVIGDGSISAGMAYEAMNNAGAMNSRLIVILNDNNMSIAP--------PVGAMSAYLSRLYSGKTYRSLREAGKQIGKHLPKLIADRAARAEEYSRGFMMG--GGTLFEELGFYYVGPVDGHNLDHLLPILQNVRDADT-GPFLIHVVTQKGKG---YGPAEAAADKYHAVVKFDIATGAQAKAKSNAPSYQNVFGQSLVKEAQKDDKIVGITAAMPSGTGIDIFEKAFPKRTFDVGIAEQHAVTFAAGLATEGYKPFCAIYSTFLQRAYDQIVHDVAIQKLPVRFAIDRAGLVGADGATHAGSFDNAYLGCLPNMVIMAAADEAELVHMVATQVAIDDRPSAVRYPRGE--GRGVEMPEVGIPLEIGKGRVIRQGNKVALLSFGTRLAEAEKAADELATLGLSTTVADARFMKPLDVELVLKLARDHEVLLTIEEGSIGGFGSHVMQTLAEHGMLDGEVKMRALVLPDVFMDHDNPVAMYARAGLDAKAIVKKVFDVLGK 631 The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan04g215300 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan04g215300_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g215300_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g215300; organism=Vigna angularis; type=mRNA; length=4712bpback to top protein sequence of LR48_mrnaVigan04g215300_Va_Jingnong6_v1.1 >LR48_mrnaVigan04g215300_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g215300_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g215300_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=643bpback to top mRNA from alignment at Chr_4-CM003374.1:30763801..30768512+ Legend: polypeptidestart_codonexonCDSintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>LR48_mrnaVigan04g215300_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g215300_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g215300; organism=Vigna angularis; type=mRNA; length=4712bp; location=Sequence derived from: Chr_4-CM003374.1:30763801..30768512+ (Vigna angularisback to top Coding sequence (CDS) from alignment at Chr_4-CM003374.1:30763801..30768512+ >LR48_mrnaVigan04g215300_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g215300_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g215300; organism=Vigna angularis; type=CDS; length=1932bp; location=Sequence derived from: Chr_4-CM003374.1:30763801..30768512+ (Vigna angularisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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