LR48_mrnaVigan04g220300
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Homology
BLAST of LR48_mrnaVigan04g220300 vs. DB:Swiss
Match: 14KD_DAUCA (14 kDa proline-rich protein DC2.15 OS=Daucus carota OX=4039 PE=2 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 1.257e-11 Identity = 38/65 (58.46%), Postives = 55/65 (84.62%), Query Frame = 1 Query: 379 NIIVGNPPTSDCCALIKXXXXXXXXXXXXXXIKANVLGVNLNVPVTLSVILSACQKTVPPGFQCS 573
N+++G+PPT CC+L++ L +LEAA+CLCTAIKAN+LG NLN+P+ LS++L+ C K VP GF+C+
Sbjct: 73 NVVIGSPPTLPCCSLLEGLVNLEAAVCLCTAIKANILGKNLNLPIALSLVLNNCGKQVPNGFECT 137
BLAST of LR48_mrnaVigan04g220300 vs. DB:Swiss
Match: ERLL1_ARATH (pEARLI1-like lipid transfer protein 1 OS=Arabidopsis thaliana OX=3702 GN=AZI1 PE=1 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 1.710e-11 Identity = 37/65 (56.92%), Postives = 54/65 (83.08%), Query Frame = 1 Query: 379 NIIVGNPPTSDCCALIKXXXXXXXXXXXXXXIKANVLGVNLNVPVTLSVILSACQKTVPPGFQCS 573
NI +G P + CC+LI+ L D++AA+CLCTA++ANVLG+NLNVP++LSV+L+ C + +P GFQC+
Sbjct: 97 NIQLGQPSSQQCCSLIQGLVDVDAAICLCTALRANVLGINLNVPISLSVLLNVCNRKLPSGFQCA 161
BLAST of LR48_mrnaVigan04g220300 vs. DB:Swiss
Match: ERLI1_ARATH (Lipid transfer protein EARLI 1 OS=Arabidopsis thaliana OX=3702 GN=EARLI1 PE=1 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 4.358e-11 Identity = 39/65 (60.00%), Postives = 53/65 (81.54%), Query Frame = 1 Query: 379 NIIVGNPPTSDCCALIKXXXXXXXXXXXXXXIKANVLGVNLNVPVTLSVILSACQKTVPPGFQCS 573
NI +G P CC+LI+ L DL+AA+CLCTA++ANVLG+NLNVP++LSV+L+ C + VP GFQC+
Sbjct: 104 NIQLGQPSAQPCCSLIQGLVDLDAAICLCTALRANVLGINLNVPISLSVLLNVCNRKVPSGFQCA 168
BLAST of LR48_mrnaVigan04g220300 vs. DB:Swiss
Match: ERLL3_ARATH (pEARLI1-like lipid transfer protein 3 OS=Arabidopsis thaliana OX=3702 GN=At4g12500 PE=2 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 2.406e-9 Identity = 36/65 (55.38%), Postives = 52/65 (80.00%), Query Frame = 1 Query: 379 NIIVGNPPTSDCCALIKXXXXXXXXXXXXXXIKANVLGVNLNVPVTLSVILSACQKTVPPGFQCS 573
N+ +G P CC+LI+ L DL+AA+CLCTA++ANVLG+NLNVP++LSV+L+ C + +P FQC+
Sbjct: 113 NVQLGQPSAQPCCSLIQGLVDLDAAICLCTALRANVLGINLNVPISLSVLLNVCNRRLPSDFQCA 177
BLAST of LR48_mrnaVigan04g220300 vs. DB:Swiss
Match: AIR1L_ARATH (Putative lipid-binding protein AIR1B OS=Arabidopsis thaliana OX=3702 GN=AIR1B PE=3 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 3.100e-9 Identity = 38/66 (57.58%), Postives = 53/66 (80.30%), Query Frame = 1 Query: 379 NIIVGNPPTSDCCALIKXXXXXXXXXXXXXXIKANVLG-VNLNVPVTLSVILSACQKTVPPGFQCS 573
++ +GNPP CC+LI+ LADLEAA CLCTA+KA++LG VN+N+P+ LSV+L+ C + P GFQC+
Sbjct: 43 DLTLGNPPVKPCCSLIQGLADLEAAACLCTALKASILGIVNINLPINLSVLLNVCSRNAPKGFQCA 108
BLAST of LR48_mrnaVigan04g220300 vs. DB:Swiss
Match: ERLL2_ARATH (pEARLI1-like lipid transfer protein 2 OS=Arabidopsis thaliana OX=3702 GN=At4g12490 PE=2 SV=1) HSP 1 Score: 55.4546 bits (132), Expect = 1.323e-8 Identity = 36/65 (55.38%), Postives = 52/65 (80.00%), Query Frame = 1 Query: 379 NIIVGNPPTSDCCALIKXXXXXXXXXXXXXXIKANVLGVNLNVPVTLSVILSACQKTVPPGFQCS 573
N+ +G P CC+LI+ L DL+AA+CLCTA++ANVLG+NLNVP++LSV+L+ C + +P FQC+
Sbjct: 118 NVQLGQPSPQPCCSLIQGLVDLDAAVCLCTALRANVLGINLNVPISLSVLLNVCNRRLPSNFQCA 182
BLAST of LR48_mrnaVigan04g220300 vs. DB:Swiss
Match: AIR1_ARATH (Putative lipid-binding protein AIR1 OS=Arabidopsis thaliana OX=3702 GN=AIR1 PE=2 SV=1) HSP 1 Score: 53.1434 bits (126), Expect = 2.974e-8 Identity = 37/66 (56.06%), Postives = 53/66 (80.30%), Query Frame = 1 Query: 379 NIIVGNPPTSDCCALIKXXXXXXXXXXXXXXIKANVLG-VNLNVPVTLSVILSACQKTVPPGFQCS 573
++ +GNPP CC+LI+ LADLEAA+CLCTA+KA++LG VN+N+P+ LSV+L+ C + P FQC+
Sbjct: 46 DLTLGNPPVKPCCSLIQGLADLEAAVCLCTAVKASILGIVNINLPINLSVLLNVCSRNAPKSFQCA 111 The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan04g220300 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1) Total hits: 7 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan04g220300_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g220300_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g220300; organism=Vigna angularis; type=mRNA; length=576bpback to top protein sequence of LR48_mrnaVigan04g220300_Va_Jingnong6_v1.1 >LR48_mrnaVigan04g220300_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g220300_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g220300_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=191bpback to top mRNA from alignment at Chr_4-CM003374.1:31196008..31196583- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>LR48_mrnaVigan04g220300_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g220300_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g220300; organism=Vigna angularis; type=mRNA; length=576bp; location=Sequence derived from: Chr_4-CM003374.1:31196008..31196583- (Vigna angularisback to top Coding sequence (CDS) from alignment at Chr_4-CM003374.1:31196008..31196583- >LR48_mrnaVigan04g220300_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g220300_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g220300; organism=Vigna angularis; type=CDS; length=576bp; location=Sequence derived from: Chr_4-CM003374.1:31196008..31196583- (Vigna angularisback to top |