LR48_mrnaVigan04g220800
|
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Homology
BLAST of LR48_mrnaVigan04g220800 vs. DB:Swiss
Match: Y4213_ARATH (ER membrane protein complex subunit 7 homolog OS=Arabidopsis thaliana OX=3702 GN=At4g32130 PE=2 SV=1) HSP 1 Score: 251.906 bits (642), Expect = 1.859e-84 Identity = 130/177 (73.45%), Postives = 152/177 (85.88%), Query Frame = 1 Query: 85 ATGSTEGYTIYGRVKIPSVGTKEYILPGKISNVKVILNGGQRVTFLRPDGYFSFHNVPAGTHLIEVAAIGYFFSPVRVDVSARHHGKIQAALTENRRGLSEFVLEPLRDEQYYEVREPFSIMSVVKSPMGLMVGFMLIVVFLMPKLMENMDPEEMRRAQEEMRNQGVPSLASLLPGA 615
++GS + YTI GRV++P+ + K SN+KVILNGGQ VTFLRPDGYF+FH VPAGTHLIEV A+GYFFSPVRVDVSARH GK+QA LTE RR L+E VLEPLR EQYYE+REPFS+MS+VKSPMGLMVGFM++VVFLMPKLMEN+DPEEM+ AQE+MR+QGVPSL SLLP +
Sbjct: 27 SSGSEDSYTITGRVRVPASTVIGHA--AKFSNIKVILNGGQHVTFLRPDGYFTFHKVPAGTHLIEVYALGYFFSPVRVDVSARHRGKVQATLTETRRSLTELVLEPLRAEQYYEMREPFSVMSIVKSPMGLMVGFMVVVVFLMPKLMENIDPEEMKSAQEQMRSQGVPSLTSLLPAS 201
BLAST of LR48_mrnaVigan04g220800 vs. DB:Swiss
Match: EMC7_XENTR (ER membrane protein complex subunit 7 OS=Xenopus tropicalis OX=8364 GN=emc7 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.290e-19 Identity = 55/173 (31.79%), Postives = 97/173 (56.07%), Query Frame = 1 Query: 79 SPATGSTEGYTIYGRVKIPSVGTKEYILPGKISNVKVILNGGQRVTFLRPDGYFSFHNVPAGTHLIEVAAIGYFFSPVRVDVSARHHGKIQAALTENRRGLSEFVLEPLRDE-------QYYEVREPFSIMSVVKSPMGLMVGFMLIVVFLMPKLMENMDPEEMRRAQEEMRN 576
SP +GS + + + GR +P V ++++ + +V+++G + V FLR DG F H+VP+G++++EV + + F PVRVD++++ GK++A N SE V P + Y+ RE + + +PM +M+ L++ L+PK++ DP EMRR E+ N
Sbjct: 34 SPGSGS-DKFKVEGRAVVPGVRPQDWV-----NTARVLVDGEEHVGFLRTDGSFVVHDVPSGSYVVEVISPAHRFEPVRVDITSK--GKMRARYV-NHIKTSEVVRLPYPLQMKSSGPPSYFIKRETWGWTDFLMNPMVMMMVLPLLIFVLLPKVVNTSDP-EMRREMEQSMN 196
BLAST of LR48_mrnaVigan04g220800 vs. DB:Swiss
Match: EMC7_MACFA (ER membrane protein complex subunit 7 OS=Macaca fascicularis OX=9541 GN=EMC7 PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.417e-18 Identity = 52/164 (31.71%), Postives = 91/164 (55.49%), Query Frame = 1 Query: 106 YTIYGRVKIPSVGTKEYILPGKISNVKVILNGGQRVTFLRPDGYFSFHNVPAGTHLIEVAAIGYFFSPVRVDVSARHHGKIQAALTENRRGLSEFVLEPLRDE-------QYYEVREPFSIMSVVKSPMGLMVGFMLIVVFLMPKLMENMDPEEMRRAQEEMRN 576
+ I GR +P V +++I S +V+++G + V FL+ DG F H++P+G++++EV + Y F PVRVD++++ GK++A N SE V P + Y+ RE + + +PM +M+ L++ L+PK++ DP +MRR E+ N
Sbjct: 45 FKIEGRAVVPGVKPQDWI-----SAARVLVDGEEHVGFLKTDGSFVVHDIPSGSYVVEVVSPAYRFDPVRVDITSK--GKMRARYV-NHIKTSEVVRLPYPLQMKSSGPPSYFIKRESWGWTDFLMNPMVMMMVLPLLIFVLLPKVVNTSDP-DMRREMEQSMN 199
BLAST of LR48_mrnaVigan04g220800 vs. DB:Swiss
Match: EMC7_HUMAN (ER membrane protein complex subunit 7 OS=Homo sapiens OX=9606 GN=EMC7 PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 2.667e-18 Identity = 52/164 (31.71%), Postives = 91/164 (55.49%), Query Frame = 1 Query: 106 YTIYGRVKIPSVGTKEYILPGKISNVKVILNGGQRVTFLRPDGYFSFHNVPAGTHLIEVAAIGYFFSPVRVDVSARHHGKIQAALTENRRGLSEFVLEPLRDE-------QYYEVREPFSIMSVVKSPMGLMVGFMLIVVFLMPKLMENMDPEEMRRAQEEMRN 576
+ I GR +P V +++I S +V+++G + V FL+ DG F H++P+G++++EV + Y F PVRVD++++ GK++A N SE V P + Y+ RE + + +PM +M+ L++ L+PK++ DP +MRR E+ N
Sbjct: 45 FKIEGRAVVPGVKPQDWI-----SAARVLVDGEEHVGFLKTDGSFVVHDIPSGSYVVEVVSPAYRFDPVRVDITSK--GKMRARYV-NYIKTSEVVRLPYPLQMKSSGPPSYFIKRESWGWTDFLMNPMVMMMVLPLLIFVLLPKVVNTSDP-DMRREMEQSMN 199
BLAST of LR48_mrnaVigan04g220800 vs. DB:Swiss
Match: EMC7_BOVIN (ER membrane protein complex subunit 7 OS=Bos taurus OX=9913 GN=EMC7 PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 3.729e-18 Identity = 52/164 (31.71%), Postives = 91/164 (55.49%), Query Frame = 1 Query: 106 YTIYGRVKIPSVGTKEYILPGKISNVKVILNGGQRVTFLRPDGYFSFHNVPAGTHLIEVAAIGYFFSPVRVDVSARHHGKIQAALTENRRGLSEFVLEPLRDE-------QYYEVREPFSIMSVVKSPMGLMVGFMLIVVFLMPKLMENMDPEEMRRAQEEMRN 576
+ I GR +P V +++I S +V+++G + V FL+ DG F H++P+G++++EV + Y F PVRVD++++ GK++A N SE V P + Y+ RE + + +PM +M+ L++ L+PK++ DP +MRR E+ N
Sbjct: 44 FKIEGRAVVPGVKPQDWI-----SAARVLVDGEEHVGFLKTDGSFVVHDIPSGSYVVEVISPAYRFDPVRVDITSK--GKMRARYV-NYIKTSEVVRLPYPLQMKSSGPPSYFIKRESWGWTDFLMNPMVMMMVLPLLIFVLLPKVVNTSDP-DMRREMEQSMN 198
BLAST of LR48_mrnaVigan04g220800 vs. DB:Swiss
Match: EMC7_MOUSE (ER membrane protein complex subunit 7 OS=Mus musculus OX=10090 GN=Emc7 PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 3.968e-18 Identity = 52/164 (31.71%), Postives = 91/164 (55.49%), Query Frame = 1 Query: 106 YTIYGRVKIPSVGTKEYILPGKISNVKVILNGGQRVTFLRPDGYFSFHNVPAGTHLIEVAAIGYFFSPVRVDVSARHHGKIQAALTENRRGLSEFVLEPLRDE-------QYYEVREPFSIMSVVKSPMGLMVGFMLIVVFLMPKLMENMDPEEMRRAQEEMRN 576
+ I GR +P V +++I S +V+++G + V FL+ DG F H++P+G++++EV + Y F PVRVD++++ GK++A N SE V P + Y+ RE + + +PM +M+ L++ L+PK++ DP +MRR E+ N
Sbjct: 44 FKIEGRAVVPGVKPQDWI-----SAARVLVDGEEHVGFLKTDGSFVVHDIPSGSYVVEVISPAYKFDPVRVDITSK--GKMRARYV-NYIKTSEVVRLPYPLQMKSSGPPSYFIKRESWGWTDFLMNPMVMMMVLPLLIFVLLPKVVNTSDP-DMRREMEQSMN 198
BLAST of LR48_mrnaVigan04g220800 vs. DB:Swiss
Match: EMC7_DANRE (ER membrane protein complex subunit 7 OS=Danio rerio OX=7955 GN=emc7 PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 8.088e-16 Identity = 61/207 (29.47%), Postives = 114/207 (55.07%), Query Frame = 1 Query: 13 RSLILFLLIQLCFSVL-------PLSFAQSPATGSTEGYTIYGRVKIPSVGTKEYILPGKISNVKVILNGGQRVTFLRPDGYFSFHNVPAGTHLIEVAAIGYFFSPVRVDVSARHHGKIQAALTENRRGLSEFVLEP----LRD---EQYYEVREPFSIMSVVKSPMGLMVGFMLIVVFLMPKLMENMDPEEMRRAQEEMRNQGVPS 591
R L +++ +Q F++ P A S + G + + I GR +P V T+++I S +V++ G + V FL+ DG F+ ++VP+G++++E+ + + F PVRVD++++ GK++A L N SE + +P +R Y+ RE + + +PM +M+ L+++ L+PK++ DP EMR+ E+ N P+
Sbjct: 6 RLLDVYIALQALFALSWGFSDPEPGPVAASQSNG--DRFKIEGRAIVPGVKTQDWI-----STARVLVEGEEYVGFLKTDGSFAVNDVPSGSYVVEIVSPSFRFEPVRVDITSK--GKMRARLV-NYIKTSEVIRQPYPLQIRAGGPHTYFMKRETWGWTDFLMNPMVMMMVLPLLIIVLLPKVVNTNDP-EMRKEMEQSMNMLNPN 201
BLAST of LR48_mrnaVigan04g220800 vs. DB:Swiss
Match: Y5281_DICDI (ER membrane protein complex subunit 7 homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0282229 PE=3 SV=2) HSP 1 Score: 61.6178 bits (148), Expect = 1.871e-10 Identity = 39/129 (30.23%), Postives = 69/129 (53.49%), Query Frame = 1 Query: 229 DGYFSFHNVPAGTHLIEVAAIGYFFSPVRVDVSARHHGKIQAALTENRRGLSEFVLEPLRDEQ--YYEVREPFSIMSVVKSPMGLMVGFMLIVVFLMPKLMENMDPEEMRRAQEEMRNQGVPSLASLLP 609
DG FSF N+ G + +E+ ++ Y F +VDV ++ K++ A EN + L+ + +++ PFSI S+V++PM + V F ++FL+PK+M ++ +E + E P+L LP
Sbjct: 79 DGIFSFVNMSNGLYSLEIESMQYNFPHFKVDVLGKNKIKVRPA--ENETSILPLPLQIKATHRIPFFQQHVPFSIFSLVQNPMAISVLFTCALIFLLPKMMSFIEQDEETK---EALKASTPALVQQLP 202
BLAST of LR48_mrnaVigan04g220800 vs. DB:Swiss
Match: YLC1_CAEEL (ER membrane protein complex subunit 7 homolog OS=Caenorhabditis elegans OX=6239 GN=C35D10.1 PE=3 SV=1) HSP 1 Score: 56.6102 bits (135), Expect = 1.354e-8 Identity = 58/198 (29.29%), Postives = 102/198 (51.52%), Query Frame = 1 Query: 19 LILFLLIQLCFSVLPLSFAQSPATGSTEGYTIYGRVKIPSVGTKEYILPGKISNVKVILNGGQRVTFLRPDGYFSFHNVPAGTHLIEVAAIGYFFSPVRVDVSARHHGKIQA-ALTENRRGLSEFVLEPLR-----DEQYYEVREPFSIMSVVKSPMGLMVGFMLIVVFLMPKLMENMDPEEMRRAQEEMRNQGVPSL 594
L+LF LI L + +S + +T +++ G + +PS G ++ LN GQ + F+R D F VP GT+++++ + F P+RVD++++ GK++A LT + + PLR +Y+ RE + I ++ SPM LM+ L+V+ ++PK+ N DPE ++EM N +P +
Sbjct: 5 LLLFSLIVLGSATEEVSRTEQTSTL----FSVEGEIALPSTRNCAKWSAG----ARIHLNHGQYMGFVRQDCTFRVDFVPTGTYIVQIENTDFVFEPIRVDITSK--GKMRARKLTILQPNNVNTLPYPLRLSARGPARYFRKREEWRITDMLFSPMVLMLVVPLVVMLILPKMTAN-DPE----LKKEMENMQMPKV 187 The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan04g220800 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1) Total hits: 9 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan04g220800_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g220800_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g220800; organism=Vigna angularis; type=mRNA; length=2635bpback to top protein sequence of LR48_mrnaVigan04g220800_Va_Jingnong6_v1.1 >LR48_mrnaVigan04g220800_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g220800_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g220800_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=209bpback to top mRNA from alignment at Chr_4-CM003374.1:31289111..31291745+ Legend: polypeptidestart_codonexonCDSintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>LR48_mrnaVigan04g220800_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g220800_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g220800; organism=Vigna angularis; type=mRNA; length=2635bp; location=Sequence derived from: Chr_4-CM003374.1:31289111..31291745+ (Vigna angularisback to top Coding sequence (CDS) from alignment at Chr_4-CM003374.1:31289111..31291745+ >LR48_mrnaVigan04g220800_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g220800_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g220800; organism=Vigna angularis; type=CDS; length=630bp; location=Sequence derived from: Chr_4-CM003374.1:31289111..31291745+ (Vigna angularisback to top |