LR48_mrnaVigan04g223400
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Homology
BLAST of LR48_mrnaVigan04g223400 vs. DB:Swiss
Match: PZ02_LUPPO (Protein PPLZ02 OS=Lupinus polyphyllus OX=3874 GN=PPLZ02 PE=2 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 3.681e-60 Identity = 131/169 (77.51%), Postives = 138/169 (81.66%), Query Frame = 1 Query: 1 MARSQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETXXXXXXXXXXXXXLMCGTRARTNFPYNPNASQXXXXXXXXXXXXXXXHRCYMASLQMTRPSSLPEPQRVASPNVITSASNFSVKSNETKTMLPQKRXXXXXXXXXNWVLKKVKVERTQQFKPLEEDHIEQ 507
MAR QQRYRG RQRHWGSWVSEIRH ILKTRIW GTFE+AEDAARAYDEAARLMCGTRARTNFPYNPNASQSSSSKLLSATL AKLHRCYMASLQMTRPSSLPE +P +I S +N +LP+KREQEEQE N KKVKVE +QQFKPLEEDHI Q
Sbjct: 1 MARPQQRYRGFRQRHWGSWVSEIRHSILKTRIWQGTFESAEDAARAYDEAARLMCGTRARTNFPYNPNASQSSSSKLLSATLIAKLHRCYMASLQMTRPSSLPE-----APRIIASPNNAVKGIGADAMLLPKKREQEEQETGGNLDFKKVKVECSQQFKPLEEDHIAQ 164
BLAST of LR48_mrnaVigan04g223400 vs. DB:Swiss
Match: ERF03_ARATH (Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana OX=3702 GN=ERF003 PE=2 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 1.371e-54 Identity = 124/191 (64.92%), Postives = 141/191 (73.82%), Query Frame = 1 Query: 1 MARSQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETXXXXXXXXXXXXXLMCGTRARTNFPYNPNASQXXXXXXXXXXXXXXXHRCYMASLQMTRPSSLPEPQRVASPNVITSASNFSVKSNETKTMLPQKRXXXXXXXXXNWVLKKVKVERTQQFKPLEEDHIEQMIEELLHYGTVELCSVIPHHRL 573
MAR QQR+RGVRQRHWGSWVSEIRHP+LKTRIWLGTFETAEDAARAYDEAARLMCG RARTNFPYNPNA +SSSKLLSATLTAKLH+CYMASLQMT+ + + A SA + V +NE+ + E W ++ Q F+PLEEDHIEQMIEELLHYG++ELCSV+P L
Sbjct: 1 MARPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNPNAIPTSSSKLLSATLTAKLHKCYMASLQMTKQTQTQTQTQTARSQ---SADSDGVTANES-----HLNRGVTETTEIKWEDGNANMQ--QNFRPLEEDHIEQMIEELLHYGSIELCSVLPTQTL 181
BLAST of LR48_mrnaVigan04g223400 vs. DB:Swiss
Match: WIN1_ARATH (Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana OX=3702 GN=WIN1 PE=2 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 2.445e-21 Identity = 49/63 (77.78%), Postives = 56/63 (88.89%), Query Frame = 1 Query: 16 QRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETXXXXXXXXXXXXXLMCGTRARTNFPYNPN 204
+++RGVRQRHWGSWV+EIRHP+LK RIWLGTFETAE+AARAYDEAA LM G A+TNFP N N
Sbjct: 5 KKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPLNNN 67
BLAST of LR48_mrnaVigan04g223400 vs. DB:Swiss
Match: SHN3_ARATH (Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana OX=3702 GN=SHN3 PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 3.465e-18 Identity = 44/59 (74.58%), Postives = 52/59 (88.14%), Query Frame = 1 Query: 16 QRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETXXXXXXXXXXXXXLMCGTRARTNFP 192
+++RGVRQR WGSWVSEIRHP+LK R+WLGTF+TAE AARAYD+AA LM G A+TNFP
Sbjct: 5 KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFP 63
BLAST of LR48_mrnaVigan04g223400 vs. DB:Swiss
Match: SHN2_ARATH (Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana OX=3702 GN=SHN2 PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 5.625e-18 Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 1 Query: 16 QRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETXXXXXXXXXXXXXLMCGTRARTNFPY 195
+++RGVRQR WGSWVSEIRHP+LK R+WLGTFETAE AARAYD+AA LM G A+TNFP
Sbjct: 5 RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKTNFPV 64
BLAST of LR48_mrnaVigan04g223400 vs. DB:Swiss
Match: ERF56_ARATH (Ethylene-responsive transcription factor ERF056 OS=Arabidopsis thaliana OX=3702 GN=ERF056 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.424e-13 Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 1 Query: 4 ARSQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETXXXXXXXXXXXXXLMCGTRARTNFP 192
++++ YRGVRQRHWG WV+EIR P +TR+WLGTFETAE AA AYD+AA + G A+ NFP
Sbjct: 65 SKTKNLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEKAALAYDQAAFQLRGDIAKLNFP 127
BLAST of LR48_mrnaVigan04g223400 vs. DB:Swiss
Match: ERF60_ARATH (Ethylene-responsive transcription factor ERF060 OS=Arabidopsis thaliana OX=3702 GN=ERF060 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.464e-13 Identity = 40/61 (65.57%), Postives = 48/61 (78.69%), Query Frame = 1 Query: 10 SQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETXXXXXXXXXXXXXLMCGTRARTNFP 192
+Q+ YRGVRQRHWG WV+EIR P +TR+WLGTF+TAE+AA AYD AA + G AR NFP
Sbjct: 89 AQKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAAMAYDLAAYKLRGEFARLNFP 149
BLAST of LR48_mrnaVigan04g223400 vs. DB:Swiss
Match: RA213_ARATH (Ethylene-responsive transcription factor RAP2-13 OS=Arabidopsis thaliana OX=3702 GN=RAP2-13 PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 3.089e-13 Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 1 Query: 4 ARSQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETXXXXXXXXXXXXXLMCGTRARTNFP 192
A+ + YRGVRQRHWG WV+EIR P +TR+WLGTF+TAE+AA AYD+AA + G AR NFP
Sbjct: 77 AKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFP 139
BLAST of LR48_mrnaVigan04g223400 vs. DB:Swiss
Match: ERF55_ARATH (Ethylene-responsive transcription factor ERF055 OS=Arabidopsis thaliana OX=3702 GN=ERF055 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 1.481e-12 Identity = 39/64 (60.94%), Postives = 49/64 (76.56%), Query Frame = 1 Query: 1 MARSQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETXXXXXXXXXXXXXLMCGTRARTNFP 192
+++ + YRGVRQRHWG WV+EIR P +TR+WLGTF+TAE+AA AYD AA + G AR NFP
Sbjct: 136 VSKPAKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDRAAFKLRGDSARLNFP 199
BLAST of LR48_mrnaVigan04g223400 vs. DB:Swiss
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana OX=3702 GN=ERF11 PE=2 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 1.546e-12 Identity = 39/64 (60.94%), Postives = 49/64 (76.56%), Query Frame = 1 Query: 19 RYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETXXXXXXXXXXXXXLMCGTRARTNFP-YNPNA 207
RYRGVR+R WG + +EIR P K+R+WLGTF+T E+AARAYD+ A G +A+TNFP YN NA
Sbjct: 19 RYRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFPCYNINA 82 The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan04g223400 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan04g223400_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g223400_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g223400; organism=Vigna angularis; type=mRNA; length=700bpback to top protein sequence of LR48_mrnaVigan04g223400_Va_Jingnong6_v1.1 >LR48_mrnaVigan04g223400_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g223400_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g223400_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=192bpback to top mRNA from alignment at Chr_4-CM003374.1:31557375..31558074+ Legend: polypeptidestart_codonexonCDSintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>LR48_mrnaVigan04g223400_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g223400_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g223400; organism=Vigna angularis; type=mRNA; length=700bp; location=Sequence derived from: Chr_4-CM003374.1:31557375..31558074+ (Vigna angularisback to top Coding sequence (CDS) from alignment at Chr_4-CM003374.1:31557375..31558074+ >LR48_mrnaVigan04g223400_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g223400_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g223400; organism=Vigna angularis; type=CDS; length=579bp; location=Sequence derived from: Chr_4-CM003374.1:31557375..31558074+ (Vigna angularisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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