LR48_mrnaVigan04g223400

Transcript Overview
NameLR48_mrnaVigan04g223400
Unique NameLR48_mrnaVigan04g223400_Va_Jingnong6_v1.1
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length700
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_4-CM003374.1supercontigChr_4-CM003374.1:31557375..31558074 +Vigna angularis Jingnong 6 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna angularis Jingnong 6 genome v1.12020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.12020-05-21
BLAST: V. angularis Jingnong 6 genome v1.12020-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ascaR536Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR547Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR553Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
asasL046Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asasL206Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asasR208Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asasR214Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasL0055Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0114Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0368Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0422Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0840Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL1090Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL1094Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaiR633Cicer arietinum ICC 4958 genome v2Cicer arietinum
ascaiR651Cicer arietinum ICC 4958 genome v2Cicer arietinum
ascaiR660Cicer arietinum ICC 4958 genome v2Cicer arietinum
asccR0866Cajanus cajan Asha genome v1.0Cajanus cajan
asccR0867Cajanus cajan Asha genome v1.0Cajanus cajan
ascrR614Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR615Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR628Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
aspsR537Pisum sativum Cameor genome v1aPisum sativum
aspsR551Pisum sativum Cameor genome v1aPisum sativum
aspsR576Pisum sativum Cameor genome v1aPisum sativum
aspvR591Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR595Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR644Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
asvuR491Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR532Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR538Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
astifR567Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR576Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR591Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR617Vicia faba cv. Tiffany genome v1.0Vicia faba
asvfhR579Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR590Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR605Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR631Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvrvR488Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR516Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvssR602Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR614Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR620Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR652Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvuaR487Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR489Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR512Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ascanR484Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR492Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR500Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Phvul.009G089300.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Ca_14777.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
rna-TanjilR_30703Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
evm.model.Chr09.1580Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-KK1_009486Cajanus cajan Asha genome v1.0Cajanus cajan
rna-TanjilR_12480Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Cr_02962.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Ca_09076Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
jg57509.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigun08g050400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Ca_01729Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vfaba.Hedin2.R1.2g181480.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-TanjilR_07858Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-XM_022781724.1Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vfaba.Hedin2.R1.2g269200.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Phvul.010G159500.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-XM_012716140.2Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-XM_004498721.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
evm.model.Chr08.241Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vfaba.Tiffany.R1.2g210320.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vfaba.Tiffany.R1.2g146480.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Phvul.001G046900.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Cr_09592.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vigun09g213600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-XM_014645190.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
LR48_mrnaVigan07g243300Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LR48_Vigan04g223400gene-LR48_Vigan04g223400_Va_Jingnong6_v1.1Vigna angularisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g223400LR48_mrnaVigan04g223400_Va_Jingnong6_v1.1-proteinVigna angularispolypeptide
LR48_mrnaVigan04g223400_Va_Jingnong6_v1.1LR48_mrnaVigan04g223400_Va_Jingnong6_v1.1Vigna angularispolypeptide


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g223400_Va_Jingnong6_v1.1-start_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:31557375..31557377LR48_mrnaVigan04g223400_Va_Jingnong6_v1.1-start_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:31557375..31557377Vigna angularisstart_codon


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g223400_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:31557375..31557457LR48_mrnaVigan04g223400_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:31557375..31557457Vigna angularisexon
LR48_mrnaVigan04g223400_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:31557579..31558074LR48_mrnaVigan04g223400_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:31557579..31558074Vigna angularisexon


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g223400_Va_Jingnong6_v1.1-intron-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:31557458..31557578LR48_mrnaVigan04g223400_Va_Jingnong6_v1.1-intron-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:31557458..31557578Vigna angularisintron


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS2200CDS2200_Va_Jingnong6_v1.1Vigna angularisCDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g223400_Va_Jingnong6_v1.1-stop_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:31558072..31558074LR48_mrnaVigan04g223400_Va_Jingnong6_v1.1-stop_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:31558072..31558074Vigna angularisstop_codon


Homology
[Close]
BLAST of LR48_mrnaVigan04g223400 vs. DB:Swiss
Match: PZ02_LUPPO (Protein PPLZ02 OS=Lupinus polyphyllus OX=3874 GN=PPLZ02 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.681e-60
Identity = 131/169 (77.51%), Postives = 138/169 (81.66%), Query Frame = 1 
Query:    1 MARSQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETXXXXXXXXXXXXXLMCGTRARTNFPYNPNASQXXXXXXXXXXXXXXXHRCYMASLQMTRPSSLPEPQRVASPNVITSASNFSVKSNETKTMLPQKRXXXXXXXXXNWVLKKVKVERTQQFKPLEEDHIEQ 507
            MAR QQRYRG RQRHWGSWVSEIRH ILKTRIW GTFE+AEDAARAYDEAARLMCGTRARTNFPYNPNASQSSSSKLLSATL AKLHRCYMASLQMTRPSSLPE     +P +I S +N          +LP+KREQEEQE   N   KKVKVE +QQFKPLEEDHI Q
Sbjct:    1 MARPQQRYRGFRQRHWGSWVSEIRHSILKTRIWQGTFESAEDAARAYDEAARLMCGTRARTNFPYNPNASQSSSSKLLSATLIAKLHRCYMASLQMTRPSSLPE-----APRIIASPNNAVKGIGADAMLLPKKREQEEQETGGNLDFKKVKVECSQQFKPLEEDHIAQ 164
[Close]
BLAST of LR48_mrnaVigan04g223400 vs. DB:Swiss
Match: ERF03_ARATH (Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana OX=3702 GN=ERF003 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.371e-54
Identity = 124/191 (64.92%), Postives = 141/191 (73.82%), Query Frame = 1 
Query:    1 MARSQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETXXXXXXXXXXXXXLMCGTRARTNFPYNPNASQXXXXXXXXXXXXXXXHRCYMASLQMTRPSSLPEPQRVASPNVITSASNFSVKSNETKTMLPQKRXXXXXXXXXNWVLKKVKVERTQQFKPLEEDHIEQMIEELLHYGTVELCSVIPHHRL 573
            MAR QQR+RGVRQRHWGSWVSEIRHP+LKTRIWLGTFETAEDAARAYDEAARLMCG RARTNFPYNPNA  +SSSKLLSATLTAKLH+CYMASLQMT+ +      + A      SA +  V +NE+            +  E  W      ++  Q F+PLEEDHIEQMIEELLHYG++ELCSV+P   L
Sbjct:    1 MARPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNPNAIPTSSSKLLSATLTAKLHKCYMASLQMTKQTQTQTQTQTARSQ---SADSDGVTANES-----HLNRGVTETTEIKWEDGNANMQ--QNFRPLEEDHIEQMIEELLHYGSIELCSVLPTQTL 181
[Close]
BLAST of LR48_mrnaVigan04g223400 vs. DB:Swiss
Match: WIN1_ARATH (Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana OX=3702 GN=WIN1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.445e-21
Identity = 49/63 (77.78%), Postives = 56/63 (88.89%), Query Frame = 1 
Query:   16 QRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETXXXXXXXXXXXXXLMCGTRARTNFPYNPN 204
            +++RGVRQRHWGSWV+EIRHP+LK RIWLGTFETAE+AARAYDEAA LM G  A+TNFP N N
Sbjct:    5 KKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPLNNN 67
[Close]
BLAST of LR48_mrnaVigan04g223400 vs. DB:Swiss
Match: SHN3_ARATH (Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana OX=3702 GN=SHN3 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.465e-18
Identity = 44/59 (74.58%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:   16 QRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETXXXXXXXXXXXXXLMCGTRARTNFP 192
            +++RGVRQR WGSWVSEIRHP+LK R+WLGTF+TAE AARAYD+AA LM G  A+TNFP
Sbjct:    5 KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFP 63
[Close]
BLAST of LR48_mrnaVigan04g223400 vs. DB:Swiss
Match: SHN2_ARATH (Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana OX=3702 GN=SHN2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.625e-18
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:   16 QRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETXXXXXXXXXXXXXLMCGTRARTNFPY 195
            +++RGVRQR WGSWVSEIRHP+LK R+WLGTFETAE AARAYD+AA LM G  A+TNFP 
Sbjct:    5 RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKTNFPV 64
[Close]
BLAST of LR48_mrnaVigan04g223400 vs. DB:Swiss
Match: ERF56_ARATH (Ethylene-responsive transcription factor ERF056 OS=Arabidopsis thaliana OX=3702 GN=ERF056 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.424e-13
Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    4 ARSQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETXXXXXXXXXXXXXLMCGTRARTNFP 192
            ++++  YRGVRQRHWG WV+EIR P  +TR+WLGTFETAE AA AYD+AA  + G  A+ NFP
Sbjct:   65 SKTKNLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEKAALAYDQAAFQLRGDIAKLNFP 127
[Close]
BLAST of LR48_mrnaVigan04g223400 vs. DB:Swiss
Match: ERF60_ARATH (Ethylene-responsive transcription factor ERF060 OS=Arabidopsis thaliana OX=3702 GN=ERF060 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.464e-13
Identity = 40/61 (65.57%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:   10 SQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETXXXXXXXXXXXXXLMCGTRARTNFP 192
            +Q+ YRGVRQRHWG WV+EIR P  +TR+WLGTF+TAE+AA AYD AA  + G  AR NFP
Sbjct:   89 AQKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAAMAYDLAAYKLRGEFARLNFP 149
[Close]
BLAST of LR48_mrnaVigan04g223400 vs. DB:Swiss
Match: RA213_ARATH (Ethylene-responsive transcription factor RAP2-13 OS=Arabidopsis thaliana OX=3702 GN=RAP2-13 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.089e-13
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    4 ARSQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETXXXXXXXXXXXXXLMCGTRARTNFP 192
            A+  + YRGVRQRHWG WV+EIR P  +TR+WLGTF+TAE+AA AYD+AA  + G  AR NFP
Sbjct:   77 AKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFP 139
[Close]
BLAST of LR48_mrnaVigan04g223400 vs. DB:Swiss
Match: ERF55_ARATH (Ethylene-responsive transcription factor ERF055 OS=Arabidopsis thaliana OX=3702 GN=ERF055 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.481e-12
Identity = 39/64 (60.94%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:    1 MARSQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETXXXXXXXXXXXXXLMCGTRARTNFP 192
            +++  + YRGVRQRHWG WV+EIR P  +TR+WLGTF+TAE+AA AYD AA  + G  AR NFP
Sbjct:  136 VSKPAKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDRAAFKLRGDSARLNFP 199
[Close]
BLAST of LR48_mrnaVigan04g223400 vs. DB:Swiss
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana OX=3702 GN=ERF11 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.546e-12
Identity = 39/64 (60.94%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:   19 RYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETXXXXXXXXXXXXXLMCGTRARTNFP-YNPNA 207
            RYRGVR+R WG + +EIR P  K+R+WLGTF+T E+AARAYD+ A    G +A+TNFP YN NA
Sbjct:   19 RYRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFPCYNINA 82
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan04g223400 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 10
Match NameE-valueIdentityDescription
PZ02_LUPPO3.681e-6077.51Protein PPLZ02 OS=Lupinus polyphyllus OX=3874 GN=P... [more]
ERF03_ARATH1.371e-5464.92Ethylene-responsive transcription factor ERF003 OS... [more]
WIN1_ARATH2.445e-2177.78Ethylene-responsive transcription factor WIN1 OS=A... [more]
SHN3_ARATH3.465e-1874.58Ethylene-responsive transcription factor SHINE 3 O... [more]
SHN2_ARATH5.625e-1875.00Ethylene-responsive transcription factor SHINE 2 O... [more]
ERF56_ARATH2.424e-1361.90Ethylene-responsive transcription factor ERF056 OS... [more]
ERF60_ARATH2.464e-1365.57Ethylene-responsive transcription factor ERF060 OS... [more]
RA213_ARATH3.089e-1363.49Ethylene-responsive transcription factor RAP2-13 O... [more]
ERF55_ARATH1.481e-1260.94Ethylene-responsive transcription factor ERF055 OS... [more]
ERF76_ARATH1.546e-1260.94Ethylene-responsive transcription factor 11 OS=Ara... [more]
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InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001471AP2/ERF domainPRINTSPR00367ETHRSPELEMNTcoord: 8..19
score: 66.97
coord: 30..46
score: 70.91
IPR001471AP2/ERF domainSMARTSM00380rav1_2coord: 7..70
e-value: 1.7E-41
score: 153.9
IPR001471AP2/ERF domainPFAMPF00847AP2coord: 7..55
e-value: 1.5E-11
score: 44.2
IPR001471AP2/ERF domainPROSITEPS51032AP2_ERFcoord: 7..64
score: 21.14
IPR001471AP2/ERF domainCDDcd00018AP2coord: 6..66
e-value: 5.07766E-35
score: 115.832
IPR036955AP2/ERF domain superfamilyGENE3D3.30.730.10coord: 6..66
e-value: 1.3E-29
score: 103.7
IPR016177DNA-binding domain superfamilySUPERFAMILY54171DNA-binding domaincoord: 7..66

Sequences
The following sequences are available for this feature:

mRNA sequence

>LR48_mrnaVigan04g223400_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g223400_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g223400; organism=Vigna angularis; type=mRNA; length=700bp
ATGGCTAGATCACAACAGCGATACCGAGGTGTCCGACAAAGGCATTGGGG
CTCTTGGGTCTCTGAAATTCGACACCCCATATTGTAAGTGACCCTCTTGG
ACCATGATGAATCAACGTTCCAATATCTgttaaaacatgtttatatttaG
CATCTGACAGTATCTCGAACATTATTGATTTAAACTTTGTTTTCTTATGT
ACAGAAAAACTAGGATATGGCTAGGAACTTTTGAAACTGCTGAGGATGCA
GCAAGAGCCTATGATGAAGCAGCAAGGCTAATGTGCGGCACAAGGGCAAG
AACAAATTTCCCTTACAACCCAAATGCATCTCAGTCATCATCTTCGAAGC
TTCTATCGGCAACTTTAACTGCAAAACTGCATAGGTGCTACATGGCTTCT
TTGCAAATGACAAGGCCATCATCACTACCAGAGCCTCAGAGAGTGGCTTC
ACCGAACGTCATCACCTCTGCAAGTAACTTCTCCGTAAAGAGTAACGAAA
CTAAAACAATGTTGCCACAGAAGAGAGAACAGGAGGAGCAAGAAGTGGAG
GAGAATTGGGTTTTGAAGAAGGTTAAGGTGGAAAGGACTCAGCAGTTCAA
GCCTCTTGAAGAGGATCACATTGAACAAATGATAGAGGAGTTGCTGCATT
ATGGCACTGTTGAGCTTTGCTCTGTCATTCCCCACCATAGGCTCTTTTAA
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protein sequence of LR48_mrnaVigan04g223400_Va_Jingnong6_v1.1

>LR48_mrnaVigan04g223400_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g223400_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g223400_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=192bp
MARSQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEA
ARLMCGTRARTNFPYNPNASQSSSSKLLSATLTAKLHRCYMASLQMTRPS
SLPEPQRVASPNVITSASNFSVKSNETKTMLPQKREQEEQEVEENWVLKK
VKVERTQQFKPLEEDHIEQMIEELLHYGTVELCSVIPHHRLF
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mRNA from alignment at Chr_4-CM003374.1:31557375..31558074+

Legend: polypeptidestart_codonexonCDSintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan04g223400_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g223400_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g223400; organism=Vigna angularis; type=mRNA; length=700bp; location=Sequence derived from: Chr_4-CM003374.1:31557375..31558074+ (Vigna angularis
ATGGCTAGATCACAACAGCGATACCGAGGTGTCCGACAAAGGCATTGGGG
CTCTTGGGTCTCTGAAATTCGACACCCCATATTGTAAGTGACCCTCTTGG
ACCATGATGAATCAACGTTCCAATATCTgttaaaacatgtttatatttaG
CATCTGACAGTATCTCGAACATTATTGATTTAAACTTTGTTTTCTTATGT
ACAGAAAAACTAGGATATGGCTAGGAACTTTTGAAACTGCTGAGGATGCA
GCAAGAGCCTATGATGAAGCAGCAAGGCTAATGTGCGGCACAAGGGCAAG
AACAAATTTCCCTTACAACCCAAATGCATCTCAGTCATCATCTTCGAAGC
TTCTATCGGCAACTTTAACTGCAAAACTGCATAGGTGCTACATGGCTTCT
TTGCAAATGACAAGGCCATCATCACTACCAGAGCCTCAGAGAGTGGCTTC
ACCGAACGTCATCACCTCTGCAAGTAACTTCTCCGTAAAGAGTAACGAAA
CTAAAACAATGTTGCCACAGAAGAGAGAACAGGAGGAGCAAGAAGTGGAG
GAGAATTGGGTTTTGAAGAAGGTTAAGGTGGAAAGGACTCAGCAGTTCAA
GCCTCTTGAAGAGGATCACATTGAACAAATGATAGAGGAGTTGCTGCATT
ATGGCACTGTTGAGCTTTGCTCTGTCATTCCCCACCATAGGCTCTTTTAA
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Coding sequence (CDS) from alignment at Chr_4-CM003374.1:31557375..31558074+

>LR48_mrnaVigan04g223400_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g223400_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g223400; organism=Vigna angularis; type=CDS; length=579bp; location=Sequence derived from: Chr_4-CM003374.1:31557375..31558074+ (Vigna angularis
ATGGCTAGATCACAACAGCGATACCGAGGTGTCCGACAAAGGCATTGGGG
CTCTTGGGTCTCTGAAATTCGACACCCCATATTAAAAACTAGGATATGGC
TAGGAACTTTTGAAACTGCTGAGGATGCAGCAAGAGCCTATGATGAAGCA
GCAAGGCTAATGTGCGGCACAAGGGCAAGAACAAATTTCCCTTACAACCC
AAATGCATCTCAGTCATCATCTTCGAAGCTTCTATCGGCAACTTTAACTG
CAAAACTGCATAGGTGCTACATGGCTTCTTTGCAAATGACAAGGCCATCA
TCACTACCAGAGCCTCAGAGAGTGGCTTCACCGAACGTCATCACCTCTGC
AAGTAACTTCTCCGTAAAGAGTAACGAAACTAAAACAATGTTGCCACAGA
AGAGAGAACAGGAGGAGCAAGAAGTGGAGGAGAATTGGGTTTTGAAGAAG
GTTAAGGTGGAAAGGACTCAGCAGTTCAAGCCTCTTGAAGAGGATCACAT
TGAACAAATGATAGAGGAGTTGCTGCATTATGGCACTGTTGAGCTTTGCT
CTGTCATTCCCCACCATAGGCTCTTTTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001471AP2/ERF_dom
IPR036955AP2/ERF_dom_sf
IPR016177DNA-bd_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003700DNA-binding transcription factor activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of DNA-templated transcription