LR48_mrnaVigan04g223600
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Homology
BLAST of LR48_mrnaVigan04g223600 vs. DB:Swiss
Match: PPDEX_ARATH (DeSI-like protein At4g17486 OS=Arabidopsis thaliana OX=3702 GN=At4g17486 PE=2 SV=1) HSP 1 Score: 212.231 bits (539), Expect = 3.158e-68 Identity = 87/167 (52.10%), Postives = 129/167 (77.25%), Query Frame = 1 Query: 37 KPGTVPVHLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYGFGAHEHDTTGIFEVQPKHCPGFTFRKSIFIGTTDLGQKDVRAFMEKLAQEYSGNTYHLISKNCNHFCNDVCLKLTGKSIPRWVNRLARLGLLCNCVLPPGLNDTKVPQATSERVQEGEKRKIRSQS 537
+ PV+LNVYDLTP+N Y YW G+G++HSG++ H +EY +GAHE+ T+G++EV+P++CPGF FR+S+ +GTT + + D R++MEKL+++Y G+TYHLI+KNCNHF +VCL+LTGK IP W+NRLAR+G CNC+LP + T V A ER++ ++ + S++
Sbjct: 22 EAALTPVYLNVYDLTPVNNYLYWFGIGIFHSGIEAHNLEYCYGAHEYPTSGVYEVEPRNCPGFIFRRSVLLGTTSMSRSDFRSYMEKLSRKYHGDTYHLIAKNCNHFTEEVCLQLTGKPIPGWINRLARVGSFCNCLLPESIQLTAV-SALPERLEFSDEDESNSEA 187
BLAST of LR48_mrnaVigan04g223600 vs. DB:Swiss
Match: DESI2_XENLA (Deubiquitinase DESI2 OS=Xenopus laevis OX=8355 GN=desi2 PE=2 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 1.083e-38 Identity = 65/160 (40.62%), Postives = 97/160 (60.62%), Query Frame = 1 Query: 52 PVHLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYGFGAHEHDTTGIFEVQPKHCP----GFTFRKSIFIGTTDLGQKDVRAFMEKLAQEYSGNTYHLISKNCNHFCNDVCLKLTGKSIPRWVNRLARLG----LLCNCVLPPGLNDTKVPQATSERVQE 507
P+ LNVYD+ IN Y LG+GV+HSG+QV+G E+ +G H + +G+FE+ P F F+++I +G+TD + D+ +E+L +EY GN YHL+ KNCNHF + + L GK IPRWVNRLA L +C+ L + + S+ +Q+
Sbjct: 5 PIILNVYDMYWINEYTSSLGIGVFHSGIQVYGREFAYGGHPYPFSGVFEISPGDSTELGDTFKFKEAIALGSTDFTENDIEKIIEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWVNRLAYFSTCVPFLQSCLPKEWLTPAALQSSISQELQD 164
BLAST of LR48_mrnaVigan04g223600 vs. DB:Swiss
Match: DESI2_DANRE (Deubiquitinase DESI2 OS=Danio rerio OX=7955 GN=desi2 PE=2 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.819e-37 Identity = 63/159 (39.62%), Postives = 97/159 (61.01%), Query Frame = 1 Query: 52 PVHLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYGFGAHEHDTTGIFEVQPKHC----PGFTFRKSIFIGTTDLGQKDVRAFMEKLAQEYSGNTYHLISKNCNHFCNDVCLKLTGKSIPRWVNRLARLG----LLCNCVLPPGLNDTKVPQATSERVQ 504
PV LNVYD+ IN + LG+GV+HSG++++G E+ +G H + +GIFE+ P F F+++I +G+TD ++DV +E++ +EY GN YHL+ KNCNHF + + L G+ IPRWVNRLA L +C+ L + + S+ +Q
Sbjct: 5 PVILNVYDMYWINEFTSSLGIGVFHSGIEIYGREFAYGGHPYPFSGIFEITPGDATELGETFKFKEAIVLGSTDFTEEDVERIVEEMGKEYKGNAYHLMHKNCNHFSSALSEILCGREIPRWVNRLAYFSSCVPFLQSCLPKEWLTPAALQSSVSQELQ 163
BLAST of LR48_mrnaVigan04g223600 vs. DB:Swiss
Match: DESI2_PONAB (Deubiquitinase DESI2 OS=Pongo abelii OX=9601 GN=DESI2 PE=2 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 1.237e-36 Identity = 61/159 (38.36%), Postives = 97/159 (61.01%), Query Frame = 1 Query: 55 VHLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYGFGAHEHDTTGIFEVQPKHCP----GFTFRKSIFIGTTDLGQKDVRAFMEKLAQEYSGNTYHLISKNCNHFCNDVCLKLTGKSIPRWVNRLARLG----LLCNCVLPPGLNDTKVPQATSERVQE 507
V LNVYD+ +N Y +G+GV+HSG++V+G E+ +G H + +GIFE+ P + F F++++ +G+TD + D+ +E+L +EY GN YHL+ KNCNHF + + L GK IPRW+NRLA L +C+ L + + S+ +Q+
Sbjct: 7 VVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLAYFSSCIPFLQSCLPKEWLTPAALQSSVSQELQD 165
BLAST of LR48_mrnaVigan04g223600 vs. DB:Swiss
Match: DESI2_HUMAN (Deubiquitinase DESI2 OS=Homo sapiens OX=9606 GN=DESI2 PE=1 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 1.237e-36 Identity = 61/159 (38.36%), Postives = 97/159 (61.01%), Query Frame = 1 Query: 55 VHLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYGFGAHEHDTTGIFEVQPKHCP----GFTFRKSIFIGTTDLGQKDVRAFMEKLAQEYSGNTYHLISKNCNHFCNDVCLKLTGKSIPRWVNRLARLG----LLCNCVLPPGLNDTKVPQATSERVQE 507
V LNVYD+ +N Y +G+GV+HSG++V+G E+ +G H + +GIFE+ P + F F++++ +G+TD + D+ +E+L +EY GN YHL+ KNCNHF + + L GK IPRW+NRLA L +C+ L + + S+ +Q+
Sbjct: 7 VVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLAYFSSCIPFLQSCLPKEWLTPAALQSSVSQELQD 165
BLAST of LR48_mrnaVigan04g223600 vs. DB:Swiss
Match: DESI2_CHICK (Deubiquitinase DESI2 OS=Gallus gallus OX=9031 GN=DESI2 PE=2 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.283e-36 Identity = 62/158 (39.24%), Postives = 96/158 (60.76%), Query Frame = 1 Query: 55 VHLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYGFGAHEHDTTGIFEVQPKHCP----GFTFRKSIFIGTTDLGQKDVRAFMEKLAQEYSGNTYHLISKNCNHFCNDVCLKLTGKSIPRWVNRLARLG----LLCNCVLPPGLNDTKVPQATSERVQ 504
V LNVYD+ +N Y LG+GV+HSG++V+G E+ +G H + +GIFE+ P + F F++++ +G+TD + D+ +E+L +E+ GN YHL+ KNCNHF + + L GK IPRWVNRLA L +C+ L + + S+ +Q
Sbjct: 6 VILNVYDMYWMNEYTSSLGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGETFKFKEAVVLGSTDFMEDDIEKIVEELGKEFKGNAYHLMHKNCNHFSSALSEILCGKEIPRWVNRLAYFSSCIPFLQSCLPKEWLTPAALQSSVSQELQ 163
BLAST of LR48_mrnaVigan04g223600 vs. DB:Swiss
Match: DESI2_MOUSE (Deubiquitinase DESI2 OS=Mus musculus OX=10090 GN=Desi2 PE=1 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.378e-36 Identity = 61/159 (38.36%), Postives = 97/159 (61.01%), Query Frame = 1 Query: 55 VHLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYGFGAHEHDTTGIFEVQPKHCP----GFTFRKSIFIGTTDLGQKDVRAFMEKLAQEYSGNTYHLISKNCNHFCNDVCLKLTGKSIPRWVNRLARLG----LLCNCVLPPGLNDTKVPQATSERVQE 507
V LNVYD+ +N Y +G+GV+HSG++V+G E+ +G H + +GIFE+ P + F F++++ +G+TD + D+ +E+L +EY GN YHL+ KNCNHF + + L GK IPRW+NRLA L +C+ L + + S+ +Q+
Sbjct: 7 VVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLAYFSSCIPFLQSCLPKEWLTPAALQSSVSQELQD 165
BLAST of LR48_mrnaVigan04g223600 vs. DB:Swiss
Match: DESI2_PIG (Deubiquitinase DESI2 OS=Sus scrofa OX=9823 GN=DESI2 PE=2 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 2.031e-36 Identity = 61/158 (38.61%), Postives = 96/158 (60.76%), Query Frame = 1 Query: 55 VHLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYGFGAHEHDTTGIFEVQPKHCP----GFTFRKSIFIGTTDLGQKDVRAFMEKLAQEYSGNTYHLISKNCNHFCNDVCLKLTGKSIPRWVNRLARLG----LLCNCVLPPGLNDTKVPQATSERVQ 504
V LNVYD+ +N Y +G+GV+HSG++V+G E+ +G H + +GIFE+ P + F F++++ +G+TD + D+ +E+L +EY GN YHL+ KNCNHF + + L GK IPRW+NRLA L +C+ L + + S+ +Q
Sbjct: 7 VVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLAYFSSCIPFLQSCLPKEWLTPAALQSSVSQELQ 164
BLAST of LR48_mrnaVigan04g223600 vs. DB:Swiss
Match: DESI2_RAT (Deubiquitinase DESI2 OS=Rattus norvegicus OX=10116 GN=Desi2 PE=2 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 2.492e-36 Identity = 61/158 (38.61%), Postives = 96/158 (60.76%), Query Frame = 1 Query: 55 VHLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYGFGAHEHDTTGIFEVQPKHCP----GFTFRKSIFIGTTDLGQKDVRAFMEKLAQEYSGNTYHLISKNCNHFCNDVCLKLTGKSIPRWVNRLARLG----LLCNCVLPPGLNDTKVPQATSERVQ 504
V LNVYD+ +N Y +G+GV+HSG++V+G E+ +G H + +GIFE+ P + F F++++ +G+TD + D+ +E+L +EY GN YHL+ KNCNHF + + L GK IPRW+NRLA L +C+ L + + S+ +Q
Sbjct: 7 VVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNAAELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLAYFSSCIPFLQSCLPKEWLTPAALQSSVSQELQ 164
BLAST of LR48_mrnaVigan04g223600 vs. DB:Swiss
Match: SDU1_SCHPO (DeSI-like protein sdu1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sdu1 PE=1 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 3.675e-31 Identity = 62/159 (38.99%), Postives = 95/159 (59.75%), Query Frame = 1 Query: 55 VHLNVYDL---TPINGYAYWLGLGVYHSGVQVHGVEYGFGAHE-HDTTGIFEVQPKH-CPGFTFRKSIFIGTTDLGQKDVRAFMEKLAQEYSGNTYHLISKNCNHFCNDVCLKLTGKSIPRWVNRLARLGLLCNCVLPPGLNDTKVPQATSERVQEGEK 516
V++NVYDL +P+N A+ LGLG+YH+G+ + G EY FGAHE +TG+F P+ G +R SI + L + DV + +L+QE++G +Y L+ +NCNHF N ++LTG IP ++NR++R+GL P T+ +Q G+K
Sbjct: 3 VYINVYDLMPDSPVNKLAWTLGLGIYHTGLVLEGKEYAFGAHEIPGSTGVFATMPRPPLEGCRWRCSIALPNCTLPKPDVDRILIRLSQEFTGLSYSLLERNCNHFTNAAAIELTGSPIPSFLNRISRIGL-------------AFPTITNALLQHGQK 148 The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan04g223600 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan04g223600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g223600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g223600; organism=Vigna angularis; type=mRNA; length=1614bpback to top protein sequence of LR48_mrnaVigan04g223600_Va_Jingnong6_v1.1 >LR48_mrnaVigan04g223600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g223600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g223600_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=223bpback to top mRNA from alignment at Chr_4-CM003374.1:31587741..31589354- Legend: polypeptidestart_codonexonCDSintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>LR48_mrnaVigan04g223600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g223600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g223600; organism=Vigna angularis; type=mRNA; length=1614bp; location=Sequence derived from: Chr_4-CM003374.1:31587741..31589354- (Vigna angularisback to top Coding sequence (CDS) from alignment at Chr_4-CM003374.1:31587741..31589354- >LR48_mrnaVigan04g223600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g223600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g223600; organism=Vigna angularis; type=CDS; length=672bp; location=Sequence derived from: Chr_4-CM003374.1:31587741..31589354- (Vigna angularisback to top |