LR48_mrnaVigan04g223600

Transcript Overview
NameLR48_mrnaVigan04g223600
Unique NameLR48_mrnaVigan04g223600_Va_Jingnong6_v1.1
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length1614
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_4-CM003374.1supercontigChr_4-CM003374.1:31587741..31589354 -Vigna angularis Jingnong 6 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna angularis Jingnong 6 genome v1.12020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.12020-05-21
BLAST: V. angularis Jingnong 6 genome v1.12020-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ascaR536Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR547Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR553Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
asasL046Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asasL206Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asasR208Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asasR214Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasL0055Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0114Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0368Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0422Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0840Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL1090Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL1094Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaiR633Cicer arietinum ICC 4958 genome v2Cicer arietinum
ascaiR651Cicer arietinum ICC 4958 genome v2Cicer arietinum
ascaiR660Cicer arietinum ICC 4958 genome v2Cicer arietinum
asccR0866Cajanus cajan Asha genome v1.0Cajanus cajan
asccR0867Cajanus cajan Asha genome v1.0Cajanus cajan
ascrR614Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR615Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR628Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
aspsR537Pisum sativum Cameor genome v1aPisum sativum
aspsR551Pisum sativum Cameor genome v1aPisum sativum
aspsR576Pisum sativum Cameor genome v1aPisum sativum
aspvR591Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR595Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR644Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
asvuR491Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR532Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR538Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
astifR567Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR576Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR591Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR617Vicia faba cv. Tiffany genome v1.0Vicia faba
asvfhR579Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR590Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR605Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR631Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvrvR466Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR488Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR516Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvssR602Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR614Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR620Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR652Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvuaR487Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR489Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR512Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ascanR484Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR492Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR500Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
evm.model.Chr08.244.1.62122bf9Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
jg35700.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-TanjilR_30702Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
jg55317.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Hedin2.R1.3g206160.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Ca_01727Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
evm.model.Chr09.1578Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-XM_004501311.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Phvul.010G159700.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-XM_014649883.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Ca_14779.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
rna-KK1_009488Cajanus cajan Asha genome v1.0Cajanus cajan
Cr_09593.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
rna-TanjilR_07856Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigun09g213800.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-XM_004498722.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Psat6g028800.1Pisum sativum Cameor genome v1aPisum sativum
Vfaba.Tiffany.R1.2g210520.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vigun10g194300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-XM_014644258.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Ca_09077Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-TanjilR_12478Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-XM_014660204.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Phvul.009G089100.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Phvul.001G046700.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vigun08g050200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Ca_10687.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Vfaba.Hedin2.R1.2g181120.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
jg57514.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Hedin2.R1.2g269480.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vfaba.Tiffany.R1.3g170120.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-KK1_009452Cajanus cajan Asha genome v1.0Cajanus cajan

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
LR48_mrnaVigan07g243600Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LR48_Vigan04g223600gene-LR48_Vigan04g223600_Va_Jingnong6_v1.1Vigna angularisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g223600LR48_mrnaVigan04g223600_Va_Jingnong6_v1.1-proteinVigna angularispolypeptide
LR48_mrnaVigan04g223600_Va_Jingnong6_v1.1LR48_mrnaVigan04g223600_Va_Jingnong6_v1.1Vigna angularispolypeptide


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g223600_Va_Jingnong6_v1.1-start_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:31589352..31589354LR48_mrnaVigan04g223600_Va_Jingnong6_v1.1-start_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:31589352..31589354Vigna angularisstart_codon


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g223600_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:31589216..31589354LR48_mrnaVigan04g223600_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:31589216..31589354Vigna angularisexon
LR48_mrnaVigan04g223600_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:31588644..31588931LR48_mrnaVigan04g223600_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:31588644..31588931Vigna angularisexon
LR48_mrnaVigan04g223600_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:31587741..31587985LR48_mrnaVigan04g223600_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:31587741..31587985Vigna angularisexon


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g223600_Va_Jingnong6_v1.1-intron-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:31588932..31589215LR48_mrnaVigan04g223600_Va_Jingnong6_v1.1-intron-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:31588932..31589215Vigna angularisintron
LR48_mrnaVigan04g223600_Va_Jingnong6_v1.1-intron-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:31587986..31588643LR48_mrnaVigan04g223600_Va_Jingnong6_v1.1-intron-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:31587986..31588643Vigna angularisintron


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS2201CDS2201_Va_Jingnong6_v1.1Vigna angularisCDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g223600_Va_Jingnong6_v1.1-stop_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:31587741..31587743LR48_mrnaVigan04g223600_Va_Jingnong6_v1.1-stop_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:31587741..31587743Vigna angularisstop_codon


Homology
[Close]
BLAST of LR48_mrnaVigan04g223600 vs. DB:Swiss
Match: PPDEX_ARATH (DeSI-like protein At4g17486 OS=Arabidopsis thaliana OX=3702 GN=At4g17486 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 3.158e-68
Identity = 87/167 (52.10%), Postives = 129/167 (77.25%), Query Frame = 1 
Query:   37 KPGTVPVHLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYGFGAHEHDTTGIFEVQPKHCPGFTFRKSIFIGTTDLGQKDVRAFMEKLAQEYSGNTYHLISKNCNHFCNDVCLKLTGKSIPRWVNRLARLGLLCNCVLPPGLNDTKVPQATSERVQEGEKRKIRSQS 537
            +    PV+LNVYDLTP+N Y YW G+G++HSG++ H +EY +GAHE+ T+G++EV+P++CPGF FR+S+ +GTT + + D R++MEKL+++Y G+TYHLI+KNCNHF  +VCL+LTGK IP W+NRLAR+G  CNC+LP  +  T V  A  ER++  ++ +  S++
Sbjct:   22 EAALTPVYLNVYDLTPVNNYLYWFGIGIFHSGIEAHNLEYCYGAHEYPTSGVYEVEPRNCPGFIFRRSVLLGTTSMSRSDFRSYMEKLSRKYHGDTYHLIAKNCNHFTEEVCLQLTGKPIPGWINRLARVGSFCNCLLPESIQLTAV-SALPERLEFSDEDESNSEA 187
[Close]
BLAST of LR48_mrnaVigan04g223600 vs. DB:Swiss
Match: DESI2_XENLA (Deubiquitinase DESI2 OS=Xenopus laevis OX=8355 GN=desi2 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.083e-38
Identity = 65/160 (40.62%), Postives = 97/160 (60.62%), Query Frame = 1 
Query:   52 PVHLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYGFGAHEHDTTGIFEVQPKHCP----GFTFRKSIFIGTTDLGQKDVRAFMEKLAQEYSGNTYHLISKNCNHFCNDVCLKLTGKSIPRWVNRLARLG----LLCNCVLPPGLNDTKVPQATSERVQE 507
            P+ LNVYD+  IN Y   LG+GV+HSG+QV+G E+ +G H +  +G+FE+ P         F F+++I +G+TD  + D+   +E+L +EY GN YHL+ KNCNHF + +   L GK IPRWVNRLA        L +C+    L    +  + S+ +Q+
Sbjct:    5 PIILNVYDMYWINEYTSSLGIGVFHSGIQVYGREFAYGGHPYPFSGVFEISPGDSTELGDTFKFKEAIALGSTDFTENDIEKIIEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWVNRLAYFSTCVPFLQSCLPKEWLTPAALQSSISQELQD 164
[Close]
BLAST of LR48_mrnaVigan04g223600 vs. DB:Swiss
Match: DESI2_DANRE (Deubiquitinase DESI2 OS=Danio rerio OX=7955 GN=desi2 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.819e-37
Identity = 63/159 (39.62%), Postives = 97/159 (61.01%), Query Frame = 1 
Query:   52 PVHLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYGFGAHEHDTTGIFEVQPKHC----PGFTFRKSIFIGTTDLGQKDVRAFMEKLAQEYSGNTYHLISKNCNHFCNDVCLKLTGKSIPRWVNRLARLG----LLCNCVLPPGLNDTKVPQATSERVQ 504
            PV LNVYD+  IN +   LG+GV+HSG++++G E+ +G H +  +GIFE+ P         F F+++I +G+TD  ++DV   +E++ +EY GN YHL+ KNCNHF + +   L G+ IPRWVNRLA        L +C+    L    +  + S+ +Q
Sbjct:    5 PVILNVYDMYWINEFTSSLGIGVFHSGIEIYGREFAYGGHPYPFSGIFEITPGDATELGETFKFKEAIVLGSTDFTEEDVERIVEEMGKEYKGNAYHLMHKNCNHFSSALSEILCGREIPRWVNRLAYFSSCVPFLQSCLPKEWLTPAALQSSVSQELQ 163
[Close]
BLAST of LR48_mrnaVigan04g223600 vs. DB:Swiss
Match: DESI2_PONAB (Deubiquitinase DESI2 OS=Pongo abelii OX=9601 GN=DESI2 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.237e-36
Identity = 61/159 (38.36%), Postives = 97/159 (61.01%), Query Frame = 1 
Query:   55 VHLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYGFGAHEHDTTGIFEVQPKHCP----GFTFRKSIFIGTTDLGQKDVRAFMEKLAQEYSGNTYHLISKNCNHFCNDVCLKLTGKSIPRWVNRLARLG----LLCNCVLPPGLNDTKVPQATSERVQE 507
            V LNVYD+  +N Y   +G+GV+HSG++V+G E+ +G H +  +GIFE+ P +       F F++++ +G+TD  + D+   +E+L +EY GN YHL+ KNCNHF + +   L GK IPRW+NRLA        L +C+    L    +  + S+ +Q+
Sbjct:    7 VVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLAYFSSCIPFLQSCLPKEWLTPAALQSSVSQELQD 165
[Close]
BLAST of LR48_mrnaVigan04g223600 vs. DB:Swiss
Match: DESI2_HUMAN (Deubiquitinase DESI2 OS=Homo sapiens OX=9606 GN=DESI2 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.237e-36
Identity = 61/159 (38.36%), Postives = 97/159 (61.01%), Query Frame = 1 
Query:   55 VHLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYGFGAHEHDTTGIFEVQPKHCP----GFTFRKSIFIGTTDLGQKDVRAFMEKLAQEYSGNTYHLISKNCNHFCNDVCLKLTGKSIPRWVNRLARLG----LLCNCVLPPGLNDTKVPQATSERVQE 507
            V LNVYD+  +N Y   +G+GV+HSG++V+G E+ +G H +  +GIFE+ P +       F F++++ +G+TD  + D+   +E+L +EY GN YHL+ KNCNHF + +   L GK IPRW+NRLA        L +C+    L    +  + S+ +Q+
Sbjct:    7 VVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLAYFSSCIPFLQSCLPKEWLTPAALQSSVSQELQD 165
[Close]
BLAST of LR48_mrnaVigan04g223600 vs. DB:Swiss
Match: DESI2_CHICK (Deubiquitinase DESI2 OS=Gallus gallus OX=9031 GN=DESI2 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.283e-36
Identity = 62/158 (39.24%), Postives = 96/158 (60.76%), Query Frame = 1 
Query:   55 VHLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYGFGAHEHDTTGIFEVQPKHCP----GFTFRKSIFIGTTDLGQKDVRAFMEKLAQEYSGNTYHLISKNCNHFCNDVCLKLTGKSIPRWVNRLARLG----LLCNCVLPPGLNDTKVPQATSERVQ 504
            V LNVYD+  +N Y   LG+GV+HSG++V+G E+ +G H +  +GIFE+ P +       F F++++ +G+TD  + D+   +E+L +E+ GN YHL+ KNCNHF + +   L GK IPRWVNRLA        L +C+    L    +  + S+ +Q
Sbjct:    6 VILNVYDMYWMNEYTSSLGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGETFKFKEAVVLGSTDFMEDDIEKIVEELGKEFKGNAYHLMHKNCNHFSSALSEILCGKEIPRWVNRLAYFSSCIPFLQSCLPKEWLTPAALQSSVSQELQ 163
[Close]
BLAST of LR48_mrnaVigan04g223600 vs. DB:Swiss
Match: DESI2_MOUSE (Deubiquitinase DESI2 OS=Mus musculus OX=10090 GN=Desi2 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.378e-36
Identity = 61/159 (38.36%), Postives = 97/159 (61.01%), Query Frame = 1 
Query:   55 VHLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYGFGAHEHDTTGIFEVQPKHCP----GFTFRKSIFIGTTDLGQKDVRAFMEKLAQEYSGNTYHLISKNCNHFCNDVCLKLTGKSIPRWVNRLARLG----LLCNCVLPPGLNDTKVPQATSERVQE 507
            V LNVYD+  +N Y   +G+GV+HSG++V+G E+ +G H +  +GIFE+ P +       F F++++ +G+TD  + D+   +E+L +EY GN YHL+ KNCNHF + +   L GK IPRW+NRLA        L +C+    L    +  + S+ +Q+
Sbjct:    7 VVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLAYFSSCIPFLQSCLPKEWLTPAALQSSVSQELQD 165
[Close]
BLAST of LR48_mrnaVigan04g223600 vs. DB:Swiss
Match: DESI2_PIG (Deubiquitinase DESI2 OS=Sus scrofa OX=9823 GN=DESI2 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.031e-36
Identity = 61/158 (38.61%), Postives = 96/158 (60.76%), Query Frame = 1 
Query:   55 VHLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYGFGAHEHDTTGIFEVQPKHCP----GFTFRKSIFIGTTDLGQKDVRAFMEKLAQEYSGNTYHLISKNCNHFCNDVCLKLTGKSIPRWVNRLARLG----LLCNCVLPPGLNDTKVPQATSERVQ 504
            V LNVYD+  +N Y   +G+GV+HSG++V+G E+ +G H +  +GIFE+ P +       F F++++ +G+TD  + D+   +E+L +EY GN YHL+ KNCNHF + +   L GK IPRW+NRLA        L +C+    L    +  + S+ +Q
Sbjct:    7 VVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLAYFSSCIPFLQSCLPKEWLTPAALQSSVSQELQ 164
[Close]
BLAST of LR48_mrnaVigan04g223600 vs. DB:Swiss
Match: DESI2_RAT (Deubiquitinase DESI2 OS=Rattus norvegicus OX=10116 GN=Desi2 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.492e-36
Identity = 61/158 (38.61%), Postives = 96/158 (60.76%), Query Frame = 1 
Query:   55 VHLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYGFGAHEHDTTGIFEVQPKHCP----GFTFRKSIFIGTTDLGQKDVRAFMEKLAQEYSGNTYHLISKNCNHFCNDVCLKLTGKSIPRWVNRLARLG----LLCNCVLPPGLNDTKVPQATSERVQ 504
            V LNVYD+  +N Y   +G+GV+HSG++V+G E+ +G H +  +GIFE+ P +       F F++++ +G+TD  + D+   +E+L +EY GN YHL+ KNCNHF + +   L GK IPRW+NRLA        L +C+    L    +  + S+ +Q
Sbjct:    7 VVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNAAELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLAYFSSCIPFLQSCLPKEWLTPAALQSSVSQELQ 164
[Close]
BLAST of LR48_mrnaVigan04g223600 vs. DB:Swiss
Match: SDU1_SCHPO (DeSI-like protein sdu1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sdu1 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 3.675e-31
Identity = 62/159 (38.99%), Postives = 95/159 (59.75%), Query Frame = 1 
Query:   55 VHLNVYDL---TPINGYAYWLGLGVYHSGVQVHGVEYGFGAHE-HDTTGIFEVQPKH-CPGFTFRKSIFIGTTDLGQKDVRAFMEKLAQEYSGNTYHLISKNCNHFCNDVCLKLTGKSIPRWVNRLARLGLLCNCVLPPGLNDTKVPQATSERVQEGEK 516
            V++NVYDL   +P+N  A+ LGLG+YH+G+ + G EY FGAHE   +TG+F   P+    G  +R SI +    L + DV   + +L+QE++G +Y L+ +NCNHF N   ++LTG  IP ++NR++R+GL               P  T+  +Q G+K
Sbjct:    3 VYINVYDLMPDSPVNKLAWTLGLGIYHTGLVLEGKEYAFGAHEIPGSTGVFATMPRPPLEGCRWRCSIALPNCTLPKPDVDRILIRLSQEFTGLSYSLLERNCNHFTNAAAIELTGSPIPSFLNRISRIGL-------------AFPTITNALLQHGQK 148
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan04g223600 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 10
Match NameE-valueIdentityDescription
PPDEX_ARATH3.158e-6852.10DeSI-like protein At4g17486 OS=Arabidopsis thalian... [more]
DESI2_XENLA1.083e-3840.63Deubiquitinase DESI2 OS=Xenopus laevis OX=8355 GN=... [more]
DESI2_DANRE1.819e-3739.62Deubiquitinase DESI2 OS=Danio rerio OX=7955 GN=des... [more]
DESI2_PONAB1.237e-3638.36Deubiquitinase DESI2 OS=Pongo abelii OX=9601 GN=DE... [more]
DESI2_HUMAN1.237e-3638.36Deubiquitinase DESI2 OS=Homo sapiens OX=9606 GN=DE... [more]
DESI2_CHICK1.283e-3639.24Deubiquitinase DESI2 OS=Gallus gallus OX=9031 GN=D... [more]
DESI2_MOUSE1.378e-3638.36Deubiquitinase DESI2 OS=Mus musculus OX=10090 GN=D... [more]
DESI2_PIG2.031e-3638.61Deubiquitinase DESI2 OS=Sus scrofa OX=9823 GN=DESI... [more]
DESI2_RAT2.492e-3638.61Deubiquitinase DESI2 OS=Rattus norvegicus OX=10116... [more]
SDU1_SCHPO3.675e-3138.99DeSI-like protein sdu1 OS=Schizosaccharomyces pomb... [more]
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InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008580PPPDE putative peptidase domainSMARTSM01179DUF862_2acoord: 17..155
e-value: 1.7E-57
score: 207.0
IPR008580PPPDE putative peptidase domainPFAMPF05903Peptidase_C97coord: 18..150
e-value: 3.3E-49
score: 166.5
IPR042266PPPDE putative peptidase domain superfamilyGENE3D3.90.1720.30coord: 11..171
e-value: 7.4E-37
score: 128.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 159..209
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 165..179
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 180..209
NoneNo IPR availablePROSITEPS51858PPPDEcoord: 17..154
score: 59.169

Sequences
The following sequences are available for this feature:

mRNA sequence

>LR48_mrnaVigan04g223600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g223600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g223600; organism=Vigna angularis; type=mRNA; length=1614bp
ATGCTGCGTAAGCTTGTCTCAGGGCCACCCAAGAACAAGCCCGGCACCGT
CCCCGTTCACCTCAACGTCTATGATCTCACCCCAATCAATGGCTATGCCT
ATTGGCTTGGCCTTGGTGTCTACCATTCTGGGGTTCAAGGTAACCCTTTA
ACCAATTCCCTCTCTTTTTTCTCTCCTTTTTTTCTTCTTTTTTTCTTTCA
TATCGCCAAACCCAAATCAAGGTACTCTTCAATTTACAAAAAAAAAAAAA
ACATTTGCTCAGACCGAACATTCGGGTTGTTTGATACAACGTTATCGGTT
TGTTTGTCAACTATCATTACTCATTATTGTGTTACAAATCCAACCATATT
ATGTTATTTGGGTGTACAATAGTACCTGTTTTTTCTTTCTTAGTTGATAA
TTAAAGTATTCTTTTACATTTAGTTCACGGTGTTGAGTACGGTTTTGGTG
CACATGAGCATGACACAACGGGGATTTTTGAAGTGCAACCGAAACACTGT
CCTGGGTTCACTTTCAGAAAGTCGATTTTCATCGGAACAACAGATCTGGG
TCAGAAAGATGTTCGGGCGTTCATGGAGAAACTGGCTCAGGAGTACTCTG
GCAACACCTATCATCTCATCTCCAAAAACTGCAACCACTTCTGTAACGAT
GTTTGCCTCAAGTTAACGGGAAAGTCAATCCCTCGATGGGTCAATCGCCT
TGCTCGACTTGGTAAGGAATACATTGATCCTATTCTTGTGCTTTATTAAC
TTGTTATCTTTTGTAGTTTGTGTCTGTTGATTTTTCACATGTCGCCAGTG
AAAACTCCTATGGCACCTACGTTGACGTTATCATAGTTGAATGTTGTGTA
CGGCTTTTAGCTATTGGTGTTGGGTTTTCTTTTTTAGTTAGAATGATATC
TTTTAGGAAAAAAAGGACAGAACTTGCTCACTTGCTCTTGGTGTTGTCTT
TTAATTTGAATTGGAGTTCTTAGCAGCAGCTTTCGTTAGATGTGAAAACT
ACATCTATGTTTTTTTGGGACAAAATCGAGAAGCAAAATTAGAGTTAGTA
AAGGTTTGTCTTAAGGTCAACATAGATTATTAAAGTGAAATTTCAATTCT
GATTAGAAAAGAACTACACTTAAAAGAGTAATTATAAATTGGCTGACAAA
GAAGCATGCTTCTTACAACACAGTACAGCCCTTGCAGAAAGTGGCAAGAG
GAATGCTCTTTGAGAGCTTTTACTGATATATTTTGATTATGCAAAAAATT
TCTTCACAATTAAGTATGTGAATTGATGTTCCTATGATGCACTTTGTAAA
CAAAATTTATGTGATTTCAAAACAACGAGTGAGCATTTCTGAGTTTGAGT
TGTGCTCCTTTACGTGAAGGTCTTCTTTGCAACTGCGTTCTTCCCCCTGG
GCTAAATGACACGAAGGTTCCACAAGCTACATCAGAGAGAGTTCAGGAGG
GAGAAAAGAGGAAAATAAGAAGTCAATCCTGCAGGTACGAGGGTTCTTCG
AATCCTTCATTGTCACGACGTTCGGCAATTAAAAGTAGTAGCCAAAGACA
TTGTCTTCCAGGATCTACATCTTTGCTTAATGCTACTCCAGCCTCAACCT
TAACAGTGAAGTAG
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protein sequence of LR48_mrnaVigan04g223600_Va_Jingnong6_v1.1

>LR48_mrnaVigan04g223600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g223600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g223600_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=223bp
MLRKLVSGPPKNKPGTVPVHLNVYDLTPINGYAYWLGLGVYHSGVQVHGV
EYGFGAHEHDTTGIFEVQPKHCPGFTFRKSIFIGTTDLGQKDVRAFMEKL
AQEYSGNTYHLISKNCNHFCNDVCLKLTGKSIPRWVNRLARLGLLCNCVL
PPGLNDTKVPQATSERVQEGEKRKIRSQSCRYEGSSNPSLSRRSAIKSSS
QRHCLPGSTSLLNATPASTLTVK
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mRNA from alignment at Chr_4-CM003374.1:31587741..31589354-

Legend: polypeptidestart_codonexonCDSintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan04g223600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g223600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g223600; organism=Vigna angularis; type=mRNA; length=1614bp; location=Sequence derived from: Chr_4-CM003374.1:31587741..31589354- (Vigna angularis
ATGCTGCGTAAGCTTGTCTCAGGGCCACCCAAGAACAAGCCCGGCACCGT
CCCCGTTCACCTCAACGTCTATGATCTCACCCCAATCAATGGCTATGCCT
ATTGGCTTGGCCTTGGTGTCTACCATTCTGGGGTTCAAGGTAACCCTTTA
ACCAATTCCCTCTCTTTTTTCTCTCCTTTTTTTCTTCTTTTTTTCTTTCA
TATCGCCAAACCCAAATCAAGGTACTCTTCAATTTACAAAAAAAAAAAAA
ACATTTGCTCAGACCGAACATTCGGGTTGTTTGATACAACGTTATCGGTT
TGTTTGTCAACTATCATTACTCATTATTGTGTTACAAATCCAACCATATT
ATGTTATTTGGGTGTACAATAGTACCTGTTTTTTCTTTCTTAGTTGATAA
TTAAAGTATTCTTTTACATTTAGTTCACGGTGTTGAGTACGGTTTTGGTG
CACATGAGCATGACACAACGGGGATTTTTGAAGTGCAACCGAAACACTGT
CCTGGGTTCACTTTCAGAAAGTCGATTTTCATCGGAACAACAGATCTGGG
TCAGAAAGATGTTCGGGCGTTCATGGAGAAACTGGCTCAGGAGTACTCTG
GCAACACCTATCATCTCATCTCCAAAAACTGCAACCACTTCTGTAACGAT
GTTTGCCTCAAGTTAACGGGAAAGTCAATCCCTCGATGGGTCAATCGCCT
TGCTCGACTTGGTAAGGAATACATTGATCCTATTCTTGTGCTTTATTAAC
TTGTTATCTTTTGTAGTTTGTGTCTGTTGATTTTTCACATGTCGCCAGTG
AAAACTCCTATGGCACCTACGTTGACGTTATCATAGTTGAATGTTGTGTA
CGGCTTTTAGCTATTGGTGTTGGGTTTTCTTTTTTAGTTAGAATGATATC
TTTTAGGAAAAAAAGGACAGAACTTGCTCACTTGCTCTTGGTGTTGTCTT
TTAATTTGAATTGGAGTTCTTAGCAGCAGCTTTCGTTAGATGTGAAAACT
ACATCTATGTTTTTTTGGGACAAAATCGAGAAGCAAAATTAGAGTTAGTA
AAGGTTTGTCTTAAGGTCAACATAGATTATTAAAGTGAAATTTCAATTCT
GATTAGAAAAGAACTACACTTAAAAGAGTAATTATAAATTGGCTGACAAA
GAAGCATGCTTCTTACAACACAGTACAGCCCTTGCAGAAAGTGGCAAGAG
GAATGCTCTTTGAGAGCTTTTACTGATATATTTTGATTATGCAAAAAATT
TCTTCACAATTAAGTATGTGAATTGATGTTCCTATGATGCACTTTGTAAA
CAAAATTTATGTGATTTCAAAACAACGAGTGAGCATTTCTGAGTTTGAGT
TGTGCTCCTTTACGTGAAGGTCTTCTTTGCAACTGCGTTCTTCCCCCTGG
GCTAAATGACACGAAGGTTCCACAAGCTACATCAGAGAGAGTTCAGGAGG
GAGAAAAGAGGAAAATAAGAAGTCAATCCTGCAGGTACGAGGGTTCTTCG
AATCCTTCATTGTCACGACGTTCGGCAATTAAAAGTAGTAGCCAAAGACA
TTGTCTTCCAGGATCTACATCTTTGCTTAATGCTACTCCAGCCTCAACCT
TAACAGTGAAGTAG
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Coding sequence (CDS) from alignment at Chr_4-CM003374.1:31587741..31589354-

>LR48_mrnaVigan04g223600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g223600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g223600; organism=Vigna angularis; type=CDS; length=672bp; location=Sequence derived from: Chr_4-CM003374.1:31587741..31589354- (Vigna angularis
ATGCTGCGTAAGCTTGTCTCAGGGCCACCCAAGAACAAGCCCGGCACCGT
CCCCGTTCACCTCAACGTCTATGATCTCACCCCAATCAATGGCTATGCCT
ATTGGCTTGGCCTTGGTGTCTACCATTCTGGGGTTCAAGTTCACGGTGTT
GAGTACGGTTTTGGTGCACATGAGCATGACACAACGGGGATTTTTGAAGT
GCAACCGAAACACTGTCCTGGGTTCACTTTCAGAAAGTCGATTTTCATCG
GAACAACAGATCTGGGTCAGAAAGATGTTCGGGCGTTCATGGAGAAACTG
GCTCAGGAGTACTCTGGCAACACCTATCATCTCATCTCCAAAAACTGCAA
CCACTTCTGTAACGATGTTTGCCTCAAGTTAACGGGAAAGTCAATCCCTC
GATGGGTCAATCGCCTTGCTCGACTTGGTCTTCTTTGCAACTGCGTTCTT
CCCCCTGGGCTAAATGACACGAAGGTTCCACAAGCTACATCAGAGAGAGT
TCAGGAGGGAGAAAAGAGGAAAATAAGAAGTCAATCCTGCAGGTACGAGG
GTTCTTCGAATCCTTCATTGTCACGACGTTCGGCAATTAAAAGTAGTAGC
CAAAGACATTGTCTTCCAGGATCTACATCTTTGCTTAATGCTACTCCAGC
CTCAACCTTAACAGTGAAGTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR008580PPPDE_dom
IPR042266PPPDE_sf