LR48_mrnaVigan04g229200
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Homology
BLAST of LR48_mrnaVigan04g229200 vs. DB:Swiss
Match: ERF18_ARATH (Ethylene-responsive transcription factor ERF018 OS=Arabidopsis thaliana OX=3702 GN=ERF018 PE=2 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 4.780e-39 Identity = 67/91 (73.63%), Postives = 73/91 (80.22%), Query Frame = 1 Query: 73 YKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALFCLRGRRANFNFPNTPCNMDTNVPLPLPALQSLTPHEIQEVAAKFAN 345
YKGVRKRKWGKWVSEIRLP+SRERIWLGSYD+PEKAARAFDAA FCLRG ANFNFPN P ++ +SLTP EIQE AA+FAN
Sbjct: 21 YKGVRKRKWGKWVSEIRLPHSRERIWLGSYDTPEKAARAFDAAQFCLRGGDANFNFPNNPPSISVE--------KSLTPPEIQEAAARFAN 103
BLAST of LR48_mrnaVigan04g229200 vs. DB:Swiss
Match: ERF17_ARATH (Ethylene-responsive transcription factor ERF017 OS=Arabidopsis thaliana OX=3702 GN=ERF017 PE=2 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 5.370e-37 Identity = 65/100 (65.00%), Postives = 76/100 (76.00%), Query Frame = 1 Query: 46 GDCKSGEKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALFCLRGRRANFNFPNTPCNMDTNVPLPLPALQSLTPHEIQEVAAKFAN 345
G S + YKGVRKRKWGKWVSEIRLPNSRERIWLGSYD+PEKAARAFDAAL+CLRG A FNFP+ P P+ + ++L+ EI+E AA+FAN
Sbjct: 3 GSSSSMQSKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPEKAARAFDAALYCLRGNNAKFNFPDNP-------PV-ISGGRNLSRSEIREAAARFAN 94
BLAST of LR48_mrnaVigan04g229200 vs. DB:Swiss
Match: ERF16_ARATH (Ethylene-responsive transcription factor ERF016 OS=Arabidopsis thaliana OX=3702 GN=ERF016 PE=2 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 1.074e-34 Identity = 63/96 (65.62%), Postives = 74/96 (77.08%), Query Frame = 1 Query: 73 YKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALFCLRGRRANFNFPNTPCNMDTNVPLPLPALQSLTPHEIQEVAAKFANEDPLL 360
Y GVRKRKWGKWV+EIRLPNSR+RIWLGS+DS EKAARAFDAAL+CLRG A FNFP+ P +P +SLTP +IQ VA++FA E+ LL
Sbjct: 7 YTGVRKRKWGKWVAEIRLPNSRDRIWLGSFDSAEKAARAFDAALYCLRGPGARFNFPDNPPE--------IPGGRSLTPQQIQVVASRFACEEELL 94
BLAST of LR48_mrnaVigan04g229200 vs. DB:Swiss
Match: ERF15_ARATH (Ethylene-responsive transcription factor ERF015 OS=Arabidopsis thaliana OX=3702 GN=ERF015 PE=2 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 7.136e-29 Identity = 51/93 (54.84%), Postives = 67/93 (72.04%), Query Frame = 1 Query: 67 KLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALFCLRGRRANFNFPNTPCNMDTNVPLPLPALQSLTPHEIQEVAAKFAN 345
K Y+GVRKR WGKWVSEIR+P + RIWLGSYD+PEKAARA+DAALFC+RG + +NFP D LP +++ L+ +IQ +A +A+
Sbjct: 25 KCYRGVRKRSWGKWVSEIRVPKTGRRIWLGSYDAPEKAARAYDAALFCIRGEKGVYNFPT-----DKKPQLPEGSVRPLSKLDIQTIATNYAS 112
BLAST of LR48_mrnaVigan04g229200 vs. DB:Swiss
Match: ERF12_ARATH (Ethylene-responsive transcription factor ERF012 OS=Arabidopsis thaliana OX=3702 GN=ERF012 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 2.343e-24 Identity = 50/92 (54.35%), Postives = 59/92 (64.13%), Query Frame = 1 Query: 73 YKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALFCLRGRRANFNFPNTPCNMDTNVPLPLPALQSLTPHEIQEVAAKFANE 348
YKGVR R WG WVSEIR PN + RIWLGSY + E AARA+D AL CL+G +AN NFP + + L L L+P IQ VAA+ AN
Sbjct: 50 YKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDVALLCLKGPQANLNFPTSSSSHHLLDNL-LDENTLLSPKSIQRVAAQAANS 140
BLAST of LR48_mrnaVigan04g229200 vs. DB:Swiss
Match: ERF23_ARATH (Ethylene-responsive transcription factor ERF023 OS=Arabidopsis thaliana OX=3702 GN=ERF023 PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 6.243e-22 Identity = 44/84 (52.38%), Postives = 55/84 (65.48%), Query Frame = 1 Query: 70 LYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALFCLRGRRANFNFPNTPCNMDTNVPLPLPALQSLTPHEIQ 321
+Y GVRKR+WGKWVSEIR P + RIWLGS+ PE AA+A+D A FCL+GR+A NFP + LP + TP +IQ
Sbjct: 44 VYHGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAAKAYDVAAFCLKGRKAQLNFPEEIED--------LPRPSTCTPRDIQ 119
BLAST of LR48_mrnaVigan04g229200 vs. DB:Swiss
Match: RA210_ARATH (Ethylene-responsive transcription factor RAP2-10 OS=Arabidopsis thaliana OX=3702 GN=RAP2-10 PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 7.068e-22 Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = 1 Query: 64 EKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALFCLRGRRANFNFP 243
+K YKG+R RKWGKWV+EIR PN R RIWLGSY +PE AARA+D A+F LRG A NFP
Sbjct: 27 DKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPEAAARAYDTAVFYLRGPSARLNFP 86
BLAST of LR48_mrnaVigan04g229200 vs. DB:Swiss
Match: ERF11_ARATH (Ethylene-responsive transcription factor ERF011 OS=Arabidopsis thaliana OX=3702 GN=ERF011 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 8.889e-22 Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = 1 Query: 64 EKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALFCLRGRRANFNFPN-TPCN 258
E+ +KG+R RKWGKWV+EIR PN R R+WLGSY +PE AARA+D A+F LRG A NFP PC
Sbjct: 18 ERPFKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTATLNFPELLPCT 83
BLAST of LR48_mrnaVigan04g229200 vs. DB:Swiss
Match: ERF21_ARATH (Ethylene-responsive transcription factor ERF021 OS=Arabidopsis thaliana OX=3702 GN=ERF021 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.969e-21 Identity = 44/81 (54.32%), Postives = 52/81 (64.20%), Query Frame = 1 Query: 49 DCKSGEKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALFCLRGRRANFNFPNTPCNMDTNVPLPLPA 291
D K Y+GVRKRKWGKWVSEIR P ++ RIWLGS+++PE AA A+D A F RGR A NFP + LP PA
Sbjct: 16 DGKGVPSAYRGVRKRKWGKWVSEIREPGTKNRIWLGSFETPEMAATAYDVAAFHFRGREARLNFPELASS------LPRPA 90
BLAST of LR48_mrnaVigan04g229200 vs. DB:Swiss
Match: RAP29_ARATH (Ethylene-responsive transcription factor RAP2-9 OS=Arabidopsis thaliana OX=3702 GN=RAP2-9 PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 2.876e-21 Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = 1 Query: 58 SGEKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALFCLRGRRANFNFP 243
S EK YKG+R RKWGKWV+EIR PN R RIWLGSY + AARA+D A+F LRG A NFP
Sbjct: 31 SNEKRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYKTAVAAARAYDTAVFYLRGPSARLNFP 92 The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan04g229200 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan04g229200_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g229200_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g229200; organism=Vigna angularis; type=mRNA; length=792bpback to top protein sequence of LR48_mrnaVigan04g229200_Va_Jingnong6_v1.1 >LR48_mrnaVigan04g229200_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g229200_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g229200_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=263bpback to top mRNA from alignment at Chr_4-CM003374.1:32261887..32262678+ Legend: mRNApolypeptidestart_codonexonCDSstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>LR48_mrnaVigan04g229200_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g229200_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g229200; organism=Vigna angularis; type=mRNA; length=792bp; location=Sequence derived from: Chr_4-CM003374.1:32261887..32262678+ (Vigna angularisback to top Coding sequence (CDS) from alignment at Chr_4-CM003374.1:32261887..32262678+ >LR48_mrnaVigan04g229200_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g229200_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g229200; organism=Vigna angularis; type=CDS; length=792bp; location=Sequence derived from: Chr_4-CM003374.1:32261887..32262678+ (Vigna angularisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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