LR48_mrnaVigan04g229200

Transcript Overview
NameLR48_mrnaVigan04g229200
Unique NameLR48_mrnaVigan04g229200_Va_Jingnong6_v1.1
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length792
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_4-CM003374.1supercontigChr_4-CM003374.1:32261887..32262678 +Vigna angularis Jingnong 6 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna angularis Jingnong 6 genome v1.12020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.12020-05-21
BLAST: V. angularis Jingnong 6 genome v1.12020-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ascaR547Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR553Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
asasL207Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asasR222Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasL0072Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0115Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0269Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0368Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0422Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0840Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaiR646Cicer arietinum ICC 4958 genome v2Cicer arietinum
ascaiR649Cicer arietinum ICC 4958 genome v2Cicer arietinum
asccR0860Cajanus cajan Asha genome v1.0Cajanus cajan
ascrR614Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR628Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
aspsR537Pisum sativum Cameor genome v1aPisum sativum
aspsR543Pisum sativum Cameor genome v1aPisum sativum
aspsR579Pisum sativum Cameor genome v1aPisum sativum
aspvR593Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR644Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
asvuR528Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR538Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
astifR576Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR591Vicia faba cv. Tiffany genome v1.0Vicia faba
asvfhR590Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR605Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvrvR487Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR510Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvssR620Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR659Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvuaR495Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR512Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ascanR492Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR500Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Vfaba.Hedin2.R1.3g209480.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vigun08g048000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-TanjilR_29202Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-XM_004501352.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-XM_014648726.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Phvul.001G044500.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vigun09g218500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Ca_01683Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-XM_014643862.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-XM_004498911.2Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
evm.model.Chr09.1538Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Cr_09634.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Psat6g024080.1Pisum sativum Cameor genome v1aPisum sativum
Cr_02920.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
evm.model.Chr08.267Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
jg35610.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Ca_09124Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Ca_09582.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
rna-TanjilR_13519Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vfaba.Tiffany.R1.3g173000.1Vicia faba cv. Tiffany genome v1.0Vicia faba
jg55245.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-TanjilR_09869Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vfaba.Hedin2.R1.2g178160.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Phvul.009G084400.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-TanjilR_30276Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vfaba.Tiffany.R1.2g143840.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-KK1_035675Cajanus cajan Asha genome v1.0Cajanus cajan

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
LR48_mrnaVigan07g246400Vigna angularis Jingnong 6 genome v1.1Vigna angularis
LR48_mrnaVigan04g016800Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LR48_Vigan04g229200gene-LR48_Vigan04g229200_Va_Jingnong6_v1.1Vigna angularisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g229200LR48_mrnaVigan04g229200_Va_Jingnong6_v1.1-proteinVigna angularispolypeptide
LR48_mrnaVigan04g229200_Va_Jingnong6_v1.1LR48_mrnaVigan04g229200_Va_Jingnong6_v1.1Vigna angularispolypeptide


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g229200_Va_Jingnong6_v1.1-start_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32261887..32261889LR48_mrnaVigan04g229200_Va_Jingnong6_v1.1-start_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32261887..32261889Vigna angularisstart_codon


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g229200_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32261887..32262678LR48_mrnaVigan04g229200_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32261887..32262678Vigna angularisexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g229200_Va_Jingnong6_v1.1-CDS-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32261887..32262678LR48_mrnaVigan04g229200_Va_Jingnong6_v1.1-CDS-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32261887..32262678Vigna angularisCDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g229200_Va_Jingnong6_v1.1-stop_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32262676..32262678LR48_mrnaVigan04g229200_Va_Jingnong6_v1.1-stop_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32262676..32262678Vigna angularisstop_codon


Homology
[Close]
BLAST of LR48_mrnaVigan04g229200 vs. DB:Swiss
Match: ERF18_ARATH (Ethylene-responsive transcription factor ERF018 OS=Arabidopsis thaliana OX=3702 GN=ERF018 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.780e-39
Identity = 67/91 (73.63%), Postives = 73/91 (80.22%), Query Frame = 1 
Query:   73 YKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALFCLRGRRANFNFPNTPCNMDTNVPLPLPALQSLTPHEIQEVAAKFAN 345
            YKGVRKRKWGKWVSEIRLP+SRERIWLGSYD+PEKAARAFDAA FCLRG  ANFNFPN P ++           +SLTP EIQE AA+FAN
Sbjct:   21 YKGVRKRKWGKWVSEIRLPHSRERIWLGSYDTPEKAARAFDAAQFCLRGGDANFNFPNNPPSISVE--------KSLTPPEIQEAAARFAN 103
[Close]
BLAST of LR48_mrnaVigan04g229200 vs. DB:Swiss
Match: ERF17_ARATH (Ethylene-responsive transcription factor ERF017 OS=Arabidopsis thaliana OX=3702 GN=ERF017 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 5.370e-37
Identity = 65/100 (65.00%), Postives = 76/100 (76.00%), Query Frame = 1 
Query:   46 GDCKSGEKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALFCLRGRRANFNFPNTPCNMDTNVPLPLPALQSLTPHEIQEVAAKFAN 345
            G   S +  YKGVRKRKWGKWVSEIRLPNSRERIWLGSYD+PEKAARAFDAAL+CLRG  A FNFP+ P       P+ +   ++L+  EI+E AA+FAN
Sbjct:    3 GSSSSMQSKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPEKAARAFDAALYCLRGNNAKFNFPDNP-------PV-ISGGRNLSRSEIREAAARFAN 94
[Close]
BLAST of LR48_mrnaVigan04g229200 vs. DB:Swiss
Match: ERF16_ARATH (Ethylene-responsive transcription factor ERF016 OS=Arabidopsis thaliana OX=3702 GN=ERF016 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.074e-34
Identity = 63/96 (65.62%), Postives = 74/96 (77.08%), Query Frame = 1 
Query:   73 YKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALFCLRGRRANFNFPNTPCNMDTNVPLPLPALQSLTPHEIQEVAAKFANEDPLL 360
            Y GVRKRKWGKWV+EIRLPNSR+RIWLGS+DS EKAARAFDAAL+CLRG  A FNFP+ P          +P  +SLTP +IQ VA++FA E+ LL
Sbjct:    7 YTGVRKRKWGKWVAEIRLPNSRDRIWLGSFDSAEKAARAFDAALYCLRGPGARFNFPDNPPE--------IPGGRSLTPQQIQVVASRFACEEELL 94
[Close]
BLAST of LR48_mrnaVigan04g229200 vs. DB:Swiss
Match: ERF15_ARATH (Ethylene-responsive transcription factor ERF015 OS=Arabidopsis thaliana OX=3702 GN=ERF015 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.136e-29
Identity = 51/93 (54.84%), Postives = 67/93 (72.04%), Query Frame = 1 
Query:   67 KLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALFCLRGRRANFNFPNTPCNMDTNVPLPLPALQSLTPHEIQEVAAKFAN 345
            K Y+GVRKR WGKWVSEIR+P +  RIWLGSYD+PEKAARA+DAALFC+RG +  +NFP      D    LP  +++ L+  +IQ +A  +A+
Sbjct:   25 KCYRGVRKRSWGKWVSEIRVPKTGRRIWLGSYDAPEKAARAYDAALFCIRGEKGVYNFPT-----DKKPQLPEGSVRPLSKLDIQTIATNYAS 112
[Close]
BLAST of LR48_mrnaVigan04g229200 vs. DB:Swiss
Match: ERF12_ARATH (Ethylene-responsive transcription factor ERF012 OS=Arabidopsis thaliana OX=3702 GN=ERF012 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.343e-24
Identity = 50/92 (54.35%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:   73 YKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALFCLRGRRANFNFPNTPCNMDTNVPLPLPALQSLTPHEIQEVAAKFANE 348
            YKGVR R WG WVSEIR PN + RIWLGSY + E AARA+D AL CL+G +AN NFP +  +      L L     L+P  IQ VAA+ AN 
Sbjct:   50 YKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDVALLCLKGPQANLNFPTSSSSHHLLDNL-LDENTLLSPKSIQRVAAQAANS 140
[Close]
BLAST of LR48_mrnaVigan04g229200 vs. DB:Swiss
Match: ERF23_ARATH (Ethylene-responsive transcription factor ERF023 OS=Arabidopsis thaliana OX=3702 GN=ERF023 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.243e-22
Identity = 44/84 (52.38%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:   70 LYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALFCLRGRRANFNFPNTPCNMDTNVPLPLPALQSLTPHEIQ 321
            +Y GVRKR+WGKWVSEIR P  + RIWLGS+  PE AA+A+D A FCL+GR+A  NFP    +        LP   + TP +IQ
Sbjct:   44 VYHGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAAKAYDVAAFCLKGRKAQLNFPEEIED--------LPRPSTCTPRDIQ 119
[Close]
BLAST of LR48_mrnaVigan04g229200 vs. DB:Swiss
Match: RA210_ARATH (Ethylene-responsive transcription factor RAP2-10 OS=Arabidopsis thaliana OX=3702 GN=RAP2-10 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 7.068e-22
Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:   64 EKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALFCLRGRRANFNFP 243
            +K YKG+R RKWGKWV+EIR PN R RIWLGSY +PE AARA+D A+F LRG  A  NFP
Sbjct:   27 DKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPEAAARAYDTAVFYLRGPSARLNFP 86
[Close]
BLAST of LR48_mrnaVigan04g229200 vs. DB:Swiss
Match: ERF11_ARATH (Ethylene-responsive transcription factor ERF011 OS=Arabidopsis thaliana OX=3702 GN=ERF011 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 8.889e-22
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:   64 EKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALFCLRGRRANFNFPN-TPCN 258
            E+ +KG+R RKWGKWV+EIR PN R R+WLGSY +PE AARA+D A+F LRG  A  NFP   PC 
Sbjct:   18 ERPFKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTATLNFPELLPCT 83
[Close]
BLAST of LR48_mrnaVigan04g229200 vs. DB:Swiss
Match: ERF21_ARATH (Ethylene-responsive transcription factor ERF021 OS=Arabidopsis thaliana OX=3702 GN=ERF021 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.969e-21
Identity = 44/81 (54.32%), Postives = 52/81 (64.20%), Query Frame = 1 
Query:   49 DCKSGEKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALFCLRGRRANFNFPNTPCNMDTNVPLPLPA 291
            D K     Y+GVRKRKWGKWVSEIR P ++ RIWLGS+++PE AA A+D A F  RGR A  NFP    +      LP PA
Sbjct:   16 DGKGVPSAYRGVRKRKWGKWVSEIREPGTKNRIWLGSFETPEMAATAYDVAAFHFRGREARLNFPELASS------LPRPA 90
[Close]
BLAST of LR48_mrnaVigan04g229200 vs. DB:Swiss
Match: RAP29_ARATH (Ethylene-responsive transcription factor RAP2-9 OS=Arabidopsis thaliana OX=3702 GN=RAP2-9 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.876e-21
Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:   58 SGEKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALFCLRGRRANFNFP 243
            S EK YKG+R RKWGKWV+EIR PN R RIWLGSY +   AARA+D A+F LRG  A  NFP
Sbjct:   31 SNEKRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYKTAVAAARAYDTAVFYLRGPSARLNFP 92
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan04g229200 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 10
Match NameE-valueIdentityDescription
ERF18_ARATH4.780e-3973.63Ethylene-responsive transcription factor ERF018 OS... [more]
ERF17_ARATH5.370e-3765.00Ethylene-responsive transcription factor ERF017 OS... [more]
ERF16_ARATH1.074e-3465.63Ethylene-responsive transcription factor ERF016 OS... [more]
ERF15_ARATH7.136e-2954.84Ethylene-responsive transcription factor ERF015 OS... [more]
ERF12_ARATH2.343e-2454.35Ethylene-responsive transcription factor ERF012 OS... [more]
ERF23_ARATH6.243e-2252.38Ethylene-responsive transcription factor ERF023 OS... [more]
RA210_ARATH7.068e-2268.33Ethylene-responsive transcription factor RAP2-10 O... [more]
ERF11_ARATH8.889e-2262.12Ethylene-responsive transcription factor ERF011 OS... [more]
ERF21_ARATH1.969e-2154.32Ethylene-responsive transcription factor ERF021 OS... [more]
RAP29_ARATH2.876e-2166.13Ethylene-responsive transcription factor RAP2-9 OS... [more]
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InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001471AP2/ERF domainPRINTSPR00367ETHRSPELEMNTcoord: 25..36
score: 63.03
coord: 47..63
score: 52.83
IPR001471AP2/ERF domainSMARTSM00380rav1_2coord: 24..87
e-value: 2.0E-32
score: 123.7
IPR001471AP2/ERF domainPFAMPF00847AP2coord: 24..73
e-value: 1.3E-10
score: 41.3
IPR001471AP2/ERF domainPROSITEPS51032AP2_ERFcoord: 24..81
score: 21.957
IPR001471AP2/ERF domainCDDcd00018AP2coord: 23..83
e-value: 2.34889E-30
score: 106.202
IPR036955AP2/ERF domain superfamilyGENE3D3.30.730.10coord: 23..83
e-value: 2.0E-26
score: 93.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 155..174
IPR016177DNA-binding domain superfamilySUPERFAMILY54171DNA-binding domaincoord: 24..81

Sequences
The following sequences are available for this feature:

mRNA sequence

>LR48_mrnaVigan04g229200_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g229200_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g229200; organism=Vigna angularis; type=mRNA; length=792bp
ATGAACATGGACACGGACATGGAGAAGCAGGCGATGTCTGGTGGTGGAGA
TTGTAAGAGTGGCGAAAAGTTATACAAAGGGGTGAGGAAGAGAAAGTGGG
GGAAATGGGTTTCTGAAATCAGACTCCCCAATAGCCGAGAACGCATATGG
CTAGGGTCTTATGATTCTCCTGAAAAAGCAGCACGAGCCTTCGATGCTGC
CCTTTTCTGTCTACGTGGTCGCCGTGCCAATTTCAACTTCCCCAACACTC
CTTGCAACATGGACACCAATGTGCCTCTGCCTTTGCCTGCTCTCCAATCT
CTTACCCCACACGAGATTCAAGAGGTTGCTGCTAAGTTTGCAAACGAGGA
CCCATTACTACTAAAACCTCTTGCACAAGAATCTCATGCTGATGCTGATG
CTcatgctgctgctgctgctgggAATTCTTCATCATTTAGGGGGAATTTG
TGTAAATCTGACAGCACAGTAGAGAGTAGTTCTAGTACCCGCACGCCCAC
CGCCACTACTTCCTCATGTTCTACTactatgcatgaatgtgatggATTGG
TGCAGGTGGACCATGGGGACATGGATTGGACATTCTTGAAAGAGTTTGAT
TACTCCAACGAAGTTTTCCCTGTTGGATCCGACTATGATCTCTACTTTGA
GCTACACAAGATGCACTCAACTTCAGGTGAGTTATTGTATTCCACTCCAC
CCCCACCTCCTTTTGAGGGTTACCAAGAATTGACCGAAGCCGAAGAGGAT
CCTTTTTCTCACCAATCATTCCTTTGGAATTGGAACTTTTGA
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protein sequence of LR48_mrnaVigan04g229200_Va_Jingnong6_v1.1

>LR48_mrnaVigan04g229200_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g229200_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g229200_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=263bp
MNMDTDMEKQAMSGGGDCKSGEKLYKGVRKRKWGKWVSEIRLPNSRERIW
LGSYDSPEKAARAFDAALFCLRGRRANFNFPNTPCNMDTNVPLPLPALQS
LTPHEIQEVAAKFANEDPLLLKPLAQESHADADAHAAAAAGNSSSFRGNL
CKSDSTVESSSSTRTPTATTSSCSTTMHECDGLVQVDHGDMDWTFLKEFD
YSNEVFPVGSDYDLYFELHKMHSTSGELLYSTPPPPPFEGYQELTEAEED
PFSHQSFLWNWNF
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mRNA from alignment at Chr_4-CM003374.1:32261887..32262678+

Legend: mRNApolypeptidestart_codonexonCDSstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan04g229200_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g229200_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g229200; organism=Vigna angularis; type=mRNA; length=792bp; location=Sequence derived from: Chr_4-CM003374.1:32261887..32262678+ (Vigna angularis
ATGAACATGGACACGGACATGGAGAAGCAGGCGATGTCTGGTGGTGGAGA
TTGTAAGAGTGGCGAAAAGTTATACAAAGGGGTGAGGAAGAGAAAGTGGG
GGAAATGGGTTTCTGAAATCAGACTCCCCAATAGCCGAGAACGCATATGG
CTAGGGTCTTATGATTCTCCTGAAAAAGCAGCACGAGCCTTCGATGCTGC
CCTTTTCTGTCTACGTGGTCGCCGTGCCAATTTCAACTTCCCCAACACTC
CTTGCAACATGGACACCAATGTGCCTCTGCCTTTGCCTGCTCTCCAATCT
CTTACCCCACACGAGATTCAAGAGGTTGCTGCTAAGTTTGCAAACGAGGA
CCCATTACTACTAAAACCTCTTGCACAAGAATCTCATGCTGATGCTGATG
CTcatgctgctgctgctgctgggAATTCTTCATCATTTAGGGGGAATTTG
TGTAAATCTGACAGCACAGTAGAGAGTAGTTCTAGTACCCGCACGCCCAC
CGCCACTACTTCCTCATGTTCTACTactatgcatgaatgtgatggATTGG
TGCAGGTGGACCATGGGGACATGGATTGGACATTCTTGAAAGAGTTTGAT
TACTCCAACGAAGTTTTCCCTGTTGGATCCGACTATGATCTCTACTTTGA
GCTACACAAGATGCACTCAACTTCAGGTGAGTTATTGTATTCCACTCCAC
CCCCACCTCCTTTTGAGGGTTACCAAGAATTGACCGAAGCCGAAGAGGAT
CCTTTTTCTCACCAATCATTCCTTTGGAATTGGAACTTTTGA
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Coding sequence (CDS) from alignment at Chr_4-CM003374.1:32261887..32262678+

>LR48_mrnaVigan04g229200_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g229200_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g229200; organism=Vigna angularis; type=CDS; length=792bp; location=Sequence derived from: Chr_4-CM003374.1:32261887..32262678+ (Vigna angularis
ATGAACATGGACACGGACATGGAGAAGCAGGCGATGTCTGGTGGTGGAGA
TTGTAAGAGTGGCGAAAAGTTATACAAAGGGGTGAGGAAGAGAAAGTGGG
GGAAATGGGTTTCTGAAATCAGACTCCCCAATAGCCGAGAACGCATATGG
CTAGGGTCTTATGATTCTCCTGAAAAAGCAGCACGAGCCTTCGATGCTGC
CCTTTTCTGTCTACGTGGTCGCCGTGCCAATTTCAACTTCCCCAACACTC
CTTGCAACATGGACACCAATGTGCCTCTGCCTTTGCCTGCTCTCCAATCT
CTTACCCCACACGAGATTCAAGAGGTTGCTGCTAAGTTTGCAAACGAGGA
CCCATTACTACTAAAACCTCTTGCACAAGAATCTCATGCTGATGCTGATG
CTcatgctgctgctgctgctgggAATTCTTCATCATTTAGGGGGAATTTG
TGTAAATCTGACAGCACAGTAGAGAGTAGTTCTAGTACCCGCACGCCCAC
CGCCACTACTTCCTCATGTTCTACTactatgcatgaatgtgatggATTGG
TGCAGGTGGACCATGGGGACATGGATTGGACATTCTTGAAAGAGTTTGAT
TACTCCAACGAAGTTTTCCCTGTTGGATCCGACTATGATCTCTACTTTGA
GCTACACAAGATGCACTCAACTTCAGGTGAGTTATTGTATTCCACTCCAC
CCCCACCTCCTTTTGAGGGTTACCAAGAATTGACCGAAGCCGAAGAGGAT
CCTTTTTCTCACCAATCATTCCTTTGGAATTGGAACTTTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001471AP2/ERF_dom
IPR036955AP2/ERF_dom_sf
IPR016177DNA-bd_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003700DNA-binding transcription factor activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of DNA-templated transcription