Transcript Overview
Name LR48_mrnaVigan04g230100
Unique Name LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1
Type mRNA
Organism Vigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length 4053
Product hypothetical protein
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
LR48_mrnaVigan04g230100 LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-protein Vigna angularis polypeptide
LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1 LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1 Vigna angularis polypeptide
The following start_codon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-start_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32357802..32357804 LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-start_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32357802..32357804 Vigna angularis start_codon
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32357016..32357804 LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32357016..32357804 Vigna angularis exon
LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32355703..32356153 LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32355703..32356153 Vigna angularis exon
LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32355553..32355623 LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32355553..32355623 Vigna angularis exon
LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32355173..32355297 LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32355173..32355297 Vigna angularis exon
LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32353752..32354052 LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32353752..32354052 Vigna angularis exon
The following intron feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-intron-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32356154..32357015 LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-intron-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32356154..32357015 Vigna angularis intron
LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-intron-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32355624..32355702 LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-intron-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32355624..32355702 Vigna angularis intron
LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-intron-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32355298..32355552 LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-intron-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32355298..32355552 Vigna angularis intron
LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-intron-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32354053..32355172 LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-intron-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32354053..32355172 Vigna angularis intron
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
CDS2252 CDS2252_Va_Jingnong6_v1.1 Vigna angularis CDS
The following stop_codon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-stop_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32353752..32353754 LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-stop_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32353752..32353754 Vigna angularis stop_codon
Homology
BLAST of LR48_mrnaVigan04g230100 vs. DB:Swiss
Match:
CID7_ARATH (Polyadenylate-binding protein-interacting protein 7 OS=Arabidopsis thaliana OX=3702 GN=CID7 PE=1 SV=1)
HSP 1 Score: 623.624 bits (1607), Expect = 0.000e+0
Identity = 333/581 (57.31%), Postives = 426/581 (73.32%), Query Frame = 1
Query: 1 MNLSKKGSQTDAKLLSPNKATTLNPNAAEFIPFALRSSSLPGTTSSVDXXXXXXXXXXXXXXXXDRXXXXXXXXXXXXVHQYWRCQLPDDITPDFKVMGEDE-SQGLDDLPLAGLSIHEDNEASRFPSSKGSKYIINEQEEISQLHNNGNSFVDKVGFSHSSYREDPSSTSFLNALAKPWEGPIGSADQLVSSGQDGLAYDDNSGHGYLNDVLAENAIMDDTDMNPLEYLASMFPGFAAESLAEAYFANGCDLHLTTEMLSQLELQVDGGFNQTLNSKTLSAPNLSAMDFPALTSPDGQAASVKYVVDNVQQSRNPYQSFDSDVMLF-KSSSSIPSRGAVDFASAVRKLASQDSGGIWKYDKNGSGDAAIGSSRNSNVLGSGYNGGQARAHFGDRLQNRGSARAAPIWLETGDAVANMYSELREEARDHACLRNAYFEQARQAYLIGNKALAKELSAKGQLHNMHMKAAHGKAQESIYRQRNAVASEMQGNGRGHERIIDLHGLHAGEAIHVLKHELSVLKSTAIAAEQRLQVYICVGTGHHTRGSRTPARLPIAVQRFLL-EEGIDFTEPQPGLLRVVIY 1734
M+L+KK S+ S K TTLNP+AAEF+PF LRS S G TS++D S++ + DR+ESS S++SD+E Q+W QLPDDITPDF +M +D+ S G L LA LS+ + NEA +FPS+ G Y ++Q ++ + NGNS DK + SS+ EDP SF+ KPW+ I +A+QL+ + ++ + S HG++ND++ E+ D ++NP+++LAS FPGFAAESLAE YFANGCDL LT EML+QLELQVDGG NQ ++ KT + P+L+ MDFPAL+ + ++ D++QQ+ N YQS + D M F KS S+ GA+D+ SAVRKLASQDSG +WKY++N S D++IGSSRNS Y G+ R+ + D+LQ+R R AP+W+ETGDAV NMYSELREEARD+A LRN YFEQARQAYL+GNKALAKELS KGQLHNM MKAAHGKAQE+IYRQRN V QGN RG+ER+IDLHGLH EA+ VLKHELSVL+STA A ++RLQ+YICVGTGHHTRGSRTPARLP+AVQR+LL EEG+D++EPQ GLLRV+IY
Sbjct: 1 MSLTKKASEPKLSGTS-IKPTTLNPHAAEFVPFTLRSPS-SGGTSTLDTRLLASSSSVGKAVL-DRTESSASHHSDEEARQFWSHQLPDDITPDFGLMTQDDNSYGSGSLSLANLSLFDGNEAEKFPSASGG-YGFSDQTGLASHNANGNSLADKSRYPISSFGEDPQRQSFMQLSPKPWDKQIMNAEQLLGNDRERNPFSGKSRHGFVNDMITESP--GDMEVNPVDFLASQFPGFAAESLAEVYFANGCDLQLTIEMLTQLELQVDGGLNQNISPKTYAPPSLTPMDFPALSISNSHGIPAQFGGDDLQQTGNHYQSPEKDNMFFFKSGPSVSQPGAIDYVSAVRKLASQDSG-MWKYERNDSADSSIGSSRNSGA----YKSGRGRSIYSDKLQSRAQTRPAPVWVETGDAVGNMYSELREEARDYARLRNVYFEQARQAYLVGNKALAKELSVKGQLHNMQMKAAHGKAQEAIYRQRNPVG---QGNSRGNERMIDLHGLHVSEALQVLKHELSVLRSTARATQERLQIYICVGTGHHTRGSRTPARLPVAVQRYLLEEEGLDYSEPQAGLLRVIIY 567
BLAST of LR48_mrnaVigan04g230100 vs. DB:Swiss
Match:
N4BP2_HUMAN (NEDD4-binding protein 2 OS=Homo sapiens OX=9606 GN=N4BP2 PE=1 SV=2)
HSP 1 Score: 72.4034 bits (176), Expect = 8.945e-12
Identity = 53/164 (32.32%), Postives = 86/164 (52.44%), Query Frame = 1
Query: 1249 YSELREEARDHACLRNAYFEQARQAYLIGNKALAKELSAKGQLHNMHMKAAHGKAQESIYRQRNAVASEMQGNGRGHERIIDLHGLHAGEAIHVLKHELSVLKSTAIAAEQ---RLQVYICVGTGHHTRGSRTPARLPIAVQRFLLEEGIDFTEPQPGLLRVVI 1731
Y + R EA H R + +A++AY IG K +A + +G LH MK A+ A I+ + N AS + N ++DLHGLH EA L+H + VL+ +Q + + + G G+H++G AR+ AV ++L+ F+E +PG L+V++
Sbjct: 1619 YDDYRAEAFLHQQKRMECYSKAKEAYRIGKKNVATFYAQQGTLHEQKMKEANHLAAIEIFEKVN--ASLLPQN------VLDLHGLHVDEA---LEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGG--VARIKPAVIKYLISHSFRFSEIKPGCLKVML 1769
BLAST of LR48_mrnaVigan04g230100 vs. DB:Swiss
Match:
Y5872_ARATH (SMR domain-containing protein At5g58720 OS=Arabidopsis thaliana OX=3702 GN=PIPC PE=1 SV=1)
HSP 1 Score: 59.6918 bits (143), Expect = 4.789e-8
Identity = 46/163 (28.22%), Postives = 80/163 (49.08%), Query Frame = 1
Query: 1249 YSELREEARDHACLRNAYFEQARQAYLIGNKALAKELSAKGQLHNMHMKAAHGKAQESIYRQRNAVASEMQGNGRGHERI--IDLHGLHAGEAIHVLKHELSVLKSTAIAAEQRLQVYICVGTGHHTRGSRTPARLPIAVQRFLLEEGIDFTEPQPGLLRVVI 1731
Y ELR+ A D + +Y+++A +AY G +A A LS KG++ + + A +A + I+ RN +G E + IDLHG H A+ +LK L +L + + + Q L+V G + +++ +V + L EG+ + E G L + +
Sbjct: 356 YHELRKGANDQWNVTKSYYQKAAEAYSKGGRAHAAYLSDKGRVASKQAQRADERASQDIFVARN----------KGIENVVTIDLHGQHVKPAMKLLK--LHLLFGSYVPSIQTLRVITGCGASGFGK-----SKVKQSVVKLLEREGVRYCEENRGTLLIKL 501
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan04g230100 vs. DB:Swiss
Analysis Date: 2020-05-21 (
BLAST: V. angularis Jingnong 6 genome v1.1 )
Total hits: 3
500 1000 1500 2000 2500 3000 3500 4000 Expect = 0.00e+0 / Id = 57.31 Expect = 8.94e-12 / Id = 32.32 Expect = 4.79e-8 / Id = 28.22 Sequence CID7_ARATH N4BP2_HUMAN Y5872_ARATH
Match Name E-value Identity Description
CID7_ARATH 0.000e+0 57.31 Polyadenylate-binding protein-interacting protein ... [more]
N4BP2_HUMAN 8.945e-12 32.32 NEDD4-binding protein 2 OS=Homo sapiens OX=9606 GN... [more]
Y5872_ARATH 4.789e-8 28.22 SMR domain-containing protein At5g58720 OS=Arabido... [more]
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InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
500 1000 1500 2000 2500 3000 3500 4000 Expect = 1.0E-21 / Score = 88.2 Expect = 2.5E-17 / Score = 62.9 Expect = 3.2E-16 / Score = 69.9 Score = 15.955 Expect = 3.8E-21 / Score = 76.9 Score = Expect = 8.79328E-18 / Score = 74.9888 Score = Sequence SM01162 PF08590 SM00463 PS50828 G3DSA:3.30.1370.110 mobidb-lite cd14371 SSF160443
IPR Term IPR Description Source Source Term Source Description Alignment
IPR013899 Domain of unknown function DUF1771 SMART SM01162 DUF1771_2 coord: 416..481 e-value: 1.0E-21 score: 88.2
IPR013899 Domain of unknown function DUF1771 PFAM PF08590 DUF1771 coord: 417..480 e-value: 2.5E-17 score: 62.9
IPR002625 Smr domain SMART SM00463 SMR_2 coord: 494..578 e-value: 3.2E-16 score: 69.9
IPR002625 Smr domain PROSITE PS50828 SMR coord: 497..578 score: 15.955
None No IPR available GENE3D 3.30.1370.110 coord: 464..578 e-value: 3.8E-21 score: 76.9
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..21
IPR041806 Polyadenylate-binding protein-interacting protein 5/6/7, CUE domain CDD cd14371 CUE_CID7_like coord: 224..265 e-value: 8.79328E-18 score: 74.9888
IPR036063 Smr domain superfamily SUPERFAMILY 160443 SMR domain-like coord: 495..576
Sequences
The
following sequences are available for this feature:
mRNA sequence
>LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g230100; organism=Vigna angularis; type=mRNA; length=4053bp ATGAACTTATCCAAGAAAGGATCCCAAACGGATGCAAAGCTATTAAGCCC TAACAAGGCAACAACTCTGAATCCAAATGCAGCAGAGTTTATTCCTTTTG CCCTCAGATCATCATCATTACCTGGAACTACCAGCTCGGTAGATGCAACA GCAGGGCTTTCGGCTGCTGGAGCTCTTGGGAAAGCAGTTTTAGATAGATC AGAATCATCCATTTCAAATAATTCTGATGATGAGGTGCACCAATACTGGC GATGTCAGCTCCCTGATGATATTACCCCTGATTTCAAGGTCATGGGAGAA GATGAATCTCAAGGTCTAGATGATCTTCCTTTAGCAGGTTTATCCATACA TGAGGACAATGAAGCCTCAAGGTTTCCTTCTTCCAAAGGAAGTAAATATA TAATAAATGAGCAGGAGGAAATATCTCAACTGCATAATAATGGCAATAGC TTTGTGGATAAAGTAGGGTTTTCTCATTCAAGCTACAGGGAGGACCCATC TTCTACAAGCTTTTTGAATGCTCTGGCAAAGCCTTGGGAGGGGCCAATTG GGAGCGCTGACCAGCTTGTTAGCAGTGGTCAAGATGGGCTTGCTTATGAT GACAACAGTGGACATGGATACTTAAATGATGTTTTGGCTGAAAATGCAAT TATGGATGATACTGATATGAATCCTTTGGAGTATTTAGCTTCCATGTTCC CTGGTTTTGCAGCAGAAAGCCTCGCAGAAGCTTACTTTGCCAATGGATGT GATTTACATCTGACCACCGAGATGCTCAGTCAGTTAGAGGTAGGTTGATT TTAATATATTAACTGACATGCTGTCAAACAATGATTCCTTATAAGCTCTA TCTCATGCATTTGATTGTGAAAATGGATGTGTTGTCACTTATATTTATGG TCAACATCTATCTTCTGCTAGTTGCAATGCAGTATGCTCTAGTGCATTTG AATAAACTTTTCTGGAAACACATATAGGAGAAGAACATTGAGGTGAAGTG AAACGAATCAAACTTTTCCCATGGATTAAAATCAACTCATTTCCTCAACT TTTTCTAGAATCATTTACATCATTCCACGAGTTGATTTCAATTTATGGTA AAAGCTCAACTCGTCTTACTCCGTAATTATTTTTAGTCTTCTCATGTATG TTTTTGTTGAGAAGTTTATCCATATTAACTCTTAATACAAGGCTAAGTAT GATGGGATGGATACTAAGTATTTAGAGCAATACCTGTGCCTTGTTTTGGC AGGGAAGATCCGGCTCTCTATAAAGTTGTGAAGTGATTCAGGTCCAACCT ACCTCTAGCTTCCAATTTCTAATTGCAGTTGCCTGGTACTGGGGGAGGGT GTTGTTAGAGATGATAATCTTGTTGTTGTTATTGTTTCTTTTCTTTTTTT TAAATAATTTTGATCTACGTTCTGATATTAATTGTGATTATAGTCCCCTT TTCATGTTATCAATGGGCCATTGGCATTTTATGAGACCTACACATATATT TGTATATGATCAAGCAGTACAATTTGTTCTCCATTTCGTGGAATCCTATA GTCATCTCTTATGATTAGTAATTATTTCTCTGGAATATTTTTTAACCTAG GAGCTTTATGTTGATAATCTCTCTCTCTTCACCTGTTCAAATTTGTAGCA GCTTCAAGTTGATGGTGGTTTCAATCAAACTTTGAATTCAAAGACTCTGT CAGCTCCCAATCTGAGTGCAATGGACTTTCCTGCACTTACTTCACCAGAT GGCCAGGCTGCTTCAGTTAAATACGTGGTTGATAATGTCCAGCAAAGTCG AAATCCTTACCAGTCATTTGACAGTGATGTGATGCTTTTCAAATCTAGTT CTTCAATTCCATCTAGAGGTGCTGTTGACTTTGCTTCAGCTGTTAGAAAG TTGGCTTCTCAGGATTCTGGTGGTATTTGGAAGTATGACAAGAATGGCTC TGGTGATGCTGCTATAGGTTCAAGTAGGAATTCAAATGTTTTGGGTAGTG GCTACAATGGTGGACAGGCCAGAGCACACTTTGGTGATCGATTGCAGAAC CGTGGCTCAGCTCGAGCAGCTCCAATTTGGCTTGAAACTGGTGATGCCGT TGGTAAGTACTTATGTTAAAAGGCTTCAATTGTGGGGTGTTTTCTCTGTG CACTATTTTCGTTAACAATTTTGCATGGCAGCAAATATGTATTCAGAGCT GCGGGAAGAGGCTCGTGATCATGCATGCTTACGTAATGCATATTTTGAGC AGGTGGGTTTTCAAATTCATGCTTTGGTGAAGTTACTGGCTATCAAAATT TAAAATAATGGTTTTGGCTACATACCTCTTGATTTGATTCTTTTGGCATT CCCTTGACTTTCTCAACTCCTTTTAATGTGTGTGTGATTCAATAGGTACT GTTGGGATGATACTAGTTCAAGAATCAGATAACAAAGTCTCTTCCAGAGG CATTGGTCTTGAATCTATTTCTTCGTTTAATTTTAATTCGTTTCTAATTT GAAACAGGCTCGTCAAGCTTACCTTATTGGTAATAAAGCCCTGGCAAAGG AACTAAGTGCTAAAGGGCAGCTTCACAATATGCATATGAAGGCAGCTCAT GGAAAAGCTCAAGAATCCATTTACCGTCAGAGGTTTGTTGTTCCCCAATG CTTCCCTTCTCGCTCTCGATTTAAGTTTGGATTATAAAAAAACTTACACT CCCTCTGTTCCAGTATCATAGTTGTTTAAGGTTGTTTCACCCAAACTAAG GAAGCATTTAGATTCGTTAATCTTCAATGCAATTTTACTCCTTCTATACC TATTATACCCCTTTAAGTTTTCTCTAGCCATATTAATTGAATTAAATTTT TGCACTTTTATCGCCCAAACGCACCATTTATTTGTTCTGTATTTCTTATT ATTTATAACTCACTTATTCTCTCTCCATATCGAAGATAAGTAACATTTGT ACTACAAGTACTATTTTTTGCATTTCTCTCACTAATATATAACTACAAGC AGTATCTCATTTTATTTTGTTATAAATTATTTTATTTTATTATCTTTCGA AGAGTTATTATTTTAAAAAAAAAATTGATAAAAATTAAACTTCCCTTTTG GTGACATGACATTATTTCAACTTCTCTTCTTTAAATCTAAATCCTGGTAA ATATGATCGCCGATTTTCTTTGTCGGAAATAGGTCACACAAGAAAATTTT TCTCAATGTGATATAAGTACTGTTTATGCACAAAATGTATTTCATAAAGC GACTATTATACAGGGACCAAAGGGAGTATTATATGGCATTTTGATGTTAA AATATTTTGCTACTCCTCAGCAATCTATTATGTATGTTTATTGACACGAA AGAGTTCACTCTGATGTCTCGACCCTTTTTCGTACTTACCACTTGTTTCT TTTCCTCAAATGTTTCTTATTGCCGTCCTCACGTCGTTCTGAAGGAGAGT TATTGTCTCTGACTTATTTAAGATGCGTGAACAATCTGAACCCCTTAAAG TAGGATTTTGTAATGCCAATTCGTTAGCTGGTTGCTTTGGAAAAAATGCT CGAGTTGAGAGTACTTTTACGAGTACTTTTAATCCATGGATAACATTAGC TCGACCTTTTTCTTGGTCACCTCGTGACAGTTTCTCTCTAGAATGGCTAC CTGGAGTATCATGCTATATTATTGTACGAACCAGAATGTTTATATACATT GCTCTAAAGTTTTGGGTTCTGCCTCAGTAATTACAAATGTTGATTTTTTC AGAAACGCAGTTGCTTCAGAGATGCAGGGCAATGGAAGAGGACACGAGAG GATAATAGACCTACATGGGTTGCATGCGGGTGAAGCCATTCATGTGCTGA AACATGAGTTGAGTGTGCTGAAAAGCACTGCCATAGCTGCTGAGCAGCGT TTGCAGGTGTATATTTGTGTGGGCACAGGTCATCATACCAGGGGTTCCCG CACTCCCGCAAGACTTCCAATAGCTGTACAGCGTTTTCTTCTTGAAGAGG GCATTGACTTCACGGAACCTCAACCAGGCCTACTTCGCGTTGTGATATAT TGA back to top protein sequence of LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1
>LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=578bp MNLSKKGSQTDAKLLSPNKATTLNPNAAEFIPFALRSSSLPGTTSSVDAT AGLSAAGALGKAVLDRSESSISNNSDDEVHQYWRCQLPDDITPDFKVMGE DESQGLDDLPLAGLSIHEDNEASRFPSSKGSKYIINEQEEISQLHNNGNS FVDKVGFSHSSYREDPSSTSFLNALAKPWEGPIGSADQLVSSGQDGLAYD DNSGHGYLNDVLAENAIMDDTDMNPLEYLASMFPGFAAESLAEAYFANGC DLHLTTEMLSQLELQVDGGFNQTLNSKTLSAPNLSAMDFPALTSPDGQAA SVKYVVDNVQQSRNPYQSFDSDVMLFKSSSSIPSRGAVDFASAVRKLASQ DSGGIWKYDKNGSGDAAIGSSRNSNVLGSGYNGGQARAHFGDRLQNRGSA RAAPIWLETGDAVANMYSELREEARDHACLRNAYFEQARQAYLIGNKALA KELSAKGQLHNMHMKAAHGKAQESIYRQRNAVASEMQGNGRGHERIIDLH GLHAGEAIHVLKHELSVLKSTAIAAEQRLQVYICVGTGHHTRGSRTPARL PIAVQRFLLEEGIDFTEPQPGLLRVVIY back to top mRNA from alignment at Chr_4-CM003374.1:32353752..32357804-
Legend: polypeptide start_codon exon CDS intron stop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g230100; organism=Vigna angularis; type=mRNA; length=4053bp; location=Sequence derived from: Chr_4-CM003374.1:32353752..32357804- (Vigna angularisATG AACTTATCCAAGAAAGGATCCCAAACGGATGCAAAGCTATTAAGCCC
TAACAAGGCAACAACTCTGAATCCAAATGCAGCAGAGTTTATTCCTTTTG
CCCTCAGATCATCATCATTACCTGGAACTACCAGCTCGGTAGATGCAACA
GCAGGGCTTTCGGCTGCTGGAGCTCTTGGGAAAGCAGTTTTAGATAGATC
AGAATCATCCATTTCAAATAATTCTGATGATGAGGTGCACCAATACTGGC
GATGTCAGCTCCCTGATGATATTACCCCTGATTTCAAGGTCATGGGAGAA
GATGAATCTCAAGGTCTAGATGATCTTCCTTTAGCAGGTTTATCCATACA
TGAGGACAATGAAGCCTCAAGGTTTCCTTCTTCCAAAGGAAGTAAATATA
TAATAAATGAGCAGGAGGAAATATCTCAACTGCATAATAATGGCAATAGC
TTTGTGGATAAAGTAGGGTTTTCTCATTCAAGCTACAGGGAGGACCCATC
TTCTACAAGCTTTTTGAATGCTCTGGCAAAGCCTTGGGAGGGGCCAATTG
GGAGCGCTGACCAGCTTGTTAGCAGTGGTCAAGATGGGCTTGCTTATGAT
GACAACAGTGGACATGGATACTTAAATGATGTTTTGGCTGAAAATGCAAT
TATGGATGATACTGATATGAATCCTTTGGAGTATTTAGCTTCCATGTTCC
CTGGTTTTGCAGCAGAAAGCCTCGCAGAAGCTTACTTTGCCAATGGATGT
GATTTACATCTGACCACCGAGATGCTCAGTCAGTTAGAGGTAGGTTGATT
TTAATATATTAACTGACATGCTGTCAAACAATGATTCCTTATAAGCTCTA
TCTCATGCATTTGATTGTGAAAATGGATGTGTTGTCACTTATATTTATGG
TCAACATCTATCTTCTGCTAGTTGCAATGCAGTATGCTCTAGTGCATTTG
AATAAACTTTTCTGGAAACACATATAGGAGAAGAACATTGAGGTGAAGTG
AAACGAATCAAACTTTTCCCATGGATTAAAATCAACTCATTTCCTCAACT
TTTTCTAGAATCATTTACATCATTCCACGAGTTGATTTCAATTTATGGTA
AAAGCTCAACTCGTCTTACTCCGTAATTATTTTTAGTCTTCTCATGTATG
TTTTTGTTGAGAAGTTTATCCATATTAACTCTTAATACAAGGCTAAGTAT
GATGGGATGGATACTAAGTATTTAGAGCAATACCTGTGCCTTGTTTTGGC
AGGGAAGATCCGGCTCTCTATAAAGTTGTGAAGTGATTCAGGTCCAACCT
ACCTCTAGCTTCCAATTTCTAATTGCAGTTGCCTGGTACTGGGGGAGGGT
GTTGTTAGAGATGATAATCTTGTTGTTGTTATTGTTTCTTTTCTTTTTTT
TAAATAATTTTGATCTACGTTCTGATATTAATTGTGATTATAGTCCCCTT
TTCATGTTATCAATGGGCCATTGGCATTTTATGAGACCTACACATATATT
TGTATATGATCAAGCAGTACAATTTGTTCTCCATTTCGTGGAATCCTATA
GTCATCTCTTATGATTAGTAATTATTTCTCTGGAATATTTTTTAACCTAG
GAGCTTTATGTTGATAATCTCTCTCTCTTCACCTGTTCAAATTTGTAGCA
G CTTCAAGTTGATGGTGGTTTCAATCAAACTTTGAATTCAAAGACTCTGT
CAGCTCCCAATCTGAGTGCAATGGACTTTCCTGCACTTACTTCACCAGAT
GGCCAGGCTGCTTCAGTTAAATACGTGGTTGATAATGTCCAGCAAAGTCG
AAATCCTTACCAGTCATTTGACAGTGATGTGATGCTTTTCAAATCTAGTT
CTTCAATTCCATCTAGAGGTGCTGTTGACTTTGCTTCAGCTGTTAGAAAG
TTGGCTTCTCAGGATTCTGGTGGTATTTGGAAGTATGACAAGAATGGCTC
TGGTGATGCTGCTATAGGTTCAAGTAGGAATTCAAATGTTTTGGGTAGTG
GCTACAATGGTGGACAGGCCAGAGCACACTTTGGTGATCGATTGCAGAAC
CGTGGCTCAGCTCGAGCAGCTCCAATTTGGCTTGAAACTGGTGATGCCGT
TG GTAAGTACTTATGTTAAAAGGCTTCAATTGTGGGGTGTTTTCTCTGTG
CACTATTTTCGTTAACAATTTTGCATGGCAG CAAATATGTATTCAGAGCT
GCGGGAAGAGGCTCGTGATCATGCATGCTTACGTAATGCATATTTTGAGC
AG GTGGGTTTTCAAATTCATGCTTTGGTGAAGTTACTGGCTATCAAAATT
TAAAATAATGGTTTTGGCTACATACCTCTTGATTTGATTCTTTTGGCATT
CCCTTGACTTTCTCAACTCCTTTTAATGTGTGTGTGATTCAATAGGTACT
GTTGGGATGATACTAGTTCAAGAATCAGATAACAAAGTCTCTTCCAGAGG
CATTGGTCTTGAATCTATTTCTTCGTTTAATTTTAATTCGTTTCTAATTT
GAAACAG GCTCGTCAAGCTTACCTTATTGGTAATAAAGCCCTGGCAAAGG
AACTAAGTGCTAAAGGGCAGCTTCACAATATGCATATGAAGGCAGCTCAT
GGAAAAGCTCAAGAATCCATTTACCGTCAGAG GTTTGTTGTTCCCCAATG
CTTCCCTTCTCGCTCTCGATTTAAGTTTGGATTATAAAAAAACTTACACT
CCCTCTGTTCCAGTATCATAGTTGTTTAAGGTTGTTTCACCCAAACTAAG
GAAGCATTTAGATTCGTTAATCTTCAATGCAATTTTACTCCTTCTATACC
TATTATACCCCTTTAAGTTTTCTCTAGCCATATTAATTGAATTAAATTTT
TGCACTTTTATCGCCCAAACGCACCATTTATTTGTTCTGTATTTCTTATT
ATTTATAACTCACTTATTCTCTCTCCATATCGAAGATAAGTAACATTTGT
ACTACAAGTACTATTTTTTGCATTTCTCTCACTAATATATAACTACAAGC
AGTATCTCATTTTATTTTGTTATAAATTATTTTATTTTATTATCTTTCGA
AGAGTTATTATTTTAAAAAAAAAATTGATAAAAATTAAACTTCCCTTTTG
GTGACATGACATTATTTCAACTTCTCTTCTTTAAATCTAAATCCTGGTAA
ATATGATCGCCGATTTTCTTTGTCGGAAATAGGTCACACAAGAAAATTTT
TCTCAATGTGATATAAGTACTGTTTATGCACAAAATGTATTTCATAAAGC
GACTATTATACAGGGACCAAAGGGAGTATTATATGGCATTTTGATGTTAA
AATATTTTGCTACTCCTCAGCAATCTATTATGTATGTTTATTGACACGAA
AGAGTTCACTCTGATGTCTCGACCCTTTTTCGTACTTACCACTTGTTTCT
TTTCCTCAAATGTTTCTTATTGCCGTCCTCACGTCGTTCTGAAGGAGAGT
TATTGTCTCTGACTTATTTAAGATGCGTGAACAATCTGAACCCCTTAAAG
TAGGATTTTGTAATGCCAATTCGTTAGCTGGTTGCTTTGGAAAAAATGCT
CGAGTTGAGAGTACTTTTACGAGTACTTTTAATCCATGGATAACATTAGC
TCGACCTTTTTCTTGGTCACCTCGTGACAGTTTCTCTCTAGAATGGCTAC
CTGGAGTATCATGCTATATTATTGTACGAACCAGAATGTTTATATACATT
GCTCTAAAGTTTTGGGTTCTGCCTCAGTAATTACAAATGTTGATTTTTTC
AG AAACGCAGTTGCTTCAGAGATGCAGGGCAATGGAAGAGGACACGAGAG
GATAATAGACCTACATGGGTTGCATGCGGGTGAAGCCATTCATGTGCTGA
AACATGAGTTGAGTGTGCTGAAAAGCACTGCCATAGCTGCTGAGCAGCGT
TTGCAGGTGTATATTTGTGTGGGCACAGGTCATCATACCAGGGGTTCCCG
CACTCCCGCAAGACTTCCAATAGCTGTACAGCGTTTTCTTCTTGAAGAGG
GCATTGACTTCACGGAACCTCAACCAGGCCTACTTCGCGTTGTGATATAT
TGA back to top Coding sequence (CDS) from alignment at Chr_4-CM003374.1:32353752..32357804-
>LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g230100; organism=Vigna angularis; type=CDS; length=1737bp; location=Sequence derived from: Chr_4-CM003374.1:32353752..32357804- (Vigna angularis ATGAACTTATCCAAGAAAGGATCCCAAACGGATGCAAAGCTATTAAGCCC TAACAAGGCAACAACTCTGAATCCAAATGCAGCAGAGTTTATTCCTTTTG CCCTCAGATCATCATCATTACCTGGAACTACCAGCTCGGTAGATGCAACA GCAGGGCTTTCGGCTGCTGGAGCTCTTGGGAAAGCAGTTTTAGATAGATC AGAATCATCCATTTCAAATAATTCTGATGATGAGGTGCACCAATACTGGC GATGTCAGCTCCCTGATGATATTACCCCTGATTTCAAGGTCATGGGAGAA GATGAATCTCAAGGTCTAGATGATCTTCCTTTAGCAGGTTTATCCATACA TGAGGACAATGAAGCCTCAAGGTTTCCTTCTTCCAAAGGAAGTAAATATA TAATAAATGAGCAGGAGGAAATATCTCAACTGCATAATAATGGCAATAGC TTTGTGGATAAAGTAGGGTTTTCTCATTCAAGCTACAGGGAGGACCCATC TTCTACAAGCTTTTTGAATGCTCTGGCAAAGCCTTGGGAGGGGCCAATTG GGAGCGCTGACCAGCTTGTTAGCAGTGGTCAAGATGGGCTTGCTTATGAT GACAACAGTGGACATGGATACTTAAATGATGTTTTGGCTGAAAATGCAAT TATGGATGATACTGATATGAATCCTTTGGAGTATTTAGCTTCCATGTTCC CTGGTTTTGCAGCAGAAAGCCTCGCAGAAGCTTACTTTGCCAATGGATGT GATTTACATCTGACCACCGAGATGCTCAGTCAGTTAGAGCTTCAAGTTGA TGGTGGTTTCAATCAAACTTTGAATTCAAAGACTCTGTCAGCTCCCAATC TGAGTGCAATGGACTTTCCTGCACTTACTTCACCAGATGGCCAGGCTGCT TCAGTTAAATACGTGGTTGATAATGTCCAGCAAAGTCGAAATCCTTACCA GTCATTTGACAGTGATGTGATGCTTTTCAAATCTAGTTCTTCAATTCCAT CTAGAGGTGCTGTTGACTTTGCTTCAGCTGTTAGAAAGTTGGCTTCTCAG GATTCTGGTGGTATTTGGAAGTATGACAAGAATGGCTCTGGTGATGCTGC TATAGGTTCAAGTAGGAATTCAAATGTTTTGGGTAGTGGCTACAATGGTG GACAGGCCAGAGCACACTTTGGTGATCGATTGCAGAACCGTGGCTCAGCT CGAGCAGCTCCAATTTGGCTTGAAACTGGTGATGCCGTTGCAAATATGTA TTCAGAGCTGCGGGAAGAGGCTCGTGATCATGCATGCTTACGTAATGCAT ATTTTGAGCAGGCTCGTCAAGCTTACCTTATTGGTAATAAAGCCCTGGCA AAGGAACTAAGTGCTAAAGGGCAGCTTCACAATATGCATATGAAGGCAGC TCATGGAAAAGCTCAAGAATCCATTTACCGTCAGAGAAACGCAGTTGCTT CAGAGATGCAGGGCAATGGAAGAGGACACGAGAGGATAATAGACCTACAT GGGTTGCATGCGGGTGAAGCCATTCATGTGCTGAAACATGAGTTGAGTGT GCTGAAAAGCACTGCCATAGCTGCTGAGCAGCGTTTGCAGGTGTATATTT GTGTGGGCACAGGTCATCATACCAGGGGTTCCCGCACTCCCGCAAGACTT CCAATAGCTGTACAGCGTTTTCTTCTTGAAGAGGGCATTGACTTCACGGA ACCTCAACCAGGCCTACTTCGCGTTGTGATATATTGA back to top
Annotated Terms
The
following terms have been associated with
this mRNA: