LR48_mrnaVigan04g230100

Transcript Overview
NameLR48_mrnaVigan04g230100
Unique NameLR48_mrnaVigan04g230100_Va_Jingnong6_v1.1
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length4053
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_4-CM003374.1supercontigChr_4-CM003374.1:32353752..32357804 -Vigna angularis Jingnong 6 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna angularis Jingnong 6 genome v1.12020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.12020-05-21
BLAST: V. angularis Jingnong 6 genome v1.12020-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ascaR547Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR553Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
asasL207Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asasR222Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasL0072Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0115Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0269Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0368Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0422Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0840Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaiR646Cicer arietinum ICC 4958 genome v2Cicer arietinum
ascaiR649Cicer arietinum ICC 4958 genome v2Cicer arietinum
asccR0847Cajanus cajan Asha genome v1.0Cajanus cajan
asccR0860Cajanus cajan Asha genome v1.0Cajanus cajan
ascrR614Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR628Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
aspsR537Pisum sativum Cameor genome v1aPisum sativum
aspsR543Pisum sativum Cameor genome v1aPisum sativum
aspsR579Pisum sativum Cameor genome v1aPisum sativum
aspvR593Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR644Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
asvuR528Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR538Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
astifR576Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR591Vicia faba cv. Tiffany genome v1.0Vicia faba
asvfhR590Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR605Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvrvR487Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR510Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvssR620Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR659Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvuaR495Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR512Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ascanR492Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR500Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Psat6g024040.1Pisum sativum Cameor genome v1aPisum sativum
Vigun08g048100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-XM_004498775.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Phvul.009G083600.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vigun09g219300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-TanjilR_30277Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-KK1_032854Cajanus cajan Asha genome v1.0Cajanus cajan
rna-XM_014645843.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Ca_09583.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
rna-XM_014649419.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-KK1_035673Cajanus cajan Asha genome v1.0Cajanus cajan
rna-TanjilR_12463Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Phvul.001G044600.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
jg35609.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
evm.model.Chr09.1532.3.62113177Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Ca_09125Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Cr_09635.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
LR48_mrnaVigan07g246200Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LR48_Vigan04g230100gene-LR48_Vigan04g230100_Va_Jingnong6_v1.1Vigna angularisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g230100LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-proteinVigna angularispolypeptide
LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1Vigna angularispolypeptide


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-start_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32357802..32357804LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-start_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32357802..32357804Vigna angularisstart_codon


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32357016..32357804LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32357016..32357804Vigna angularisexon
LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32355703..32356153LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32355703..32356153Vigna angularisexon
LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32355553..32355623LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32355553..32355623Vigna angularisexon
LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32355173..32355297LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32355173..32355297Vigna angularisexon
LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32353752..32354052LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32353752..32354052Vigna angularisexon


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-intron-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32356154..32357015LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-intron-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32356154..32357015Vigna angularisintron
LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-intron-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32355624..32355702LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-intron-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32355624..32355702Vigna angularisintron
LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-intron-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32355298..32355552LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-intron-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32355298..32355552Vigna angularisintron
LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-intron-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32354053..32355172LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-intron-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32354053..32355172Vigna angularisintron


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS2252CDS2252_Va_Jingnong6_v1.1Vigna angularisCDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-stop_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32353752..32353754LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1-stop_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32353752..32353754Vigna angularisstop_codon


Homology
[Close]
BLAST of LR48_mrnaVigan04g230100 vs. DB:Swiss
Match: CID7_ARATH (Polyadenylate-binding protein-interacting protein 7 OS=Arabidopsis thaliana OX=3702 GN=CID7 PE=1 SV=1)

HSP 1 Score: 623.624 bits (1607), Expect = 0.000e+0
Identity = 333/581 (57.31%), Postives = 426/581 (73.32%), Query Frame = 1 
Query:    1 MNLSKKGSQTDAKLLSPNKATTLNPNAAEFIPFALRSSSLPGTTSSVDXXXXXXXXXXXXXXXXDRXXXXXXXXXXXXVHQYWRCQLPDDITPDFKVMGEDE-SQGLDDLPLAGLSIHEDNEASRFPSSKGSKYIINEQEEISQLHNNGNSFVDKVGFSHSSYREDPSSTSFLNALAKPWEGPIGSADQLVSSGQDGLAYDDNSGHGYLNDVLAENAIMDDTDMNPLEYLASMFPGFAAESLAEAYFANGCDLHLTTEMLSQLELQVDGGFNQTLNSKTLSAPNLSAMDFPALTSPDGQAASVKYVVDNVQQSRNPYQSFDSDVMLF-KSSSSIPSRGAVDFASAVRKLASQDSGGIWKYDKNGSGDAAIGSSRNSNVLGSGYNGGQARAHFGDRLQNRGSARAAPIWLETGDAVANMYSELREEARDHACLRNAYFEQARQAYLIGNKALAKELSAKGQLHNMHMKAAHGKAQESIYRQRNAVASEMQGNGRGHERIIDLHGLHAGEAIHVLKHELSVLKSTAIAAEQRLQVYICVGTGHHTRGSRTPARLPIAVQRFLL-EEGIDFTEPQPGLLRVVIY 1734
            M+L+KK S+      S  K TTLNP+AAEF+PF LRS S  G TS++D     S++      + DR+ESS S++SD+E  Q+W  QLPDDITPDF +M +D+ S G   L LA LS+ + NEA +FPS+ G  Y  ++Q  ++  + NGNS  DK  +  SS+ EDP   SF+    KPW+  I +A+QL+ + ++   +   S HG++ND++ E+    D ++NP+++LAS FPGFAAESLAE YFANGCDL LT EML+QLELQVDGG NQ ++ KT + P+L+ MDFPAL+  +      ++  D++QQ+ N YQS + D M F KS  S+   GA+D+ SAVRKLASQDSG +WKY++N S D++IGSSRNS      Y  G+ R+ + D+LQ+R   R AP+W+ETGDAV NMYSELREEARD+A LRN YFEQARQAYL+GNKALAKELS KGQLHNM MKAAHGKAQE+IYRQRN V    QGN RG+ER+IDLHGLH  EA+ VLKHELSVL+STA A ++RLQ+YICVGTGHHTRGSRTPARLP+AVQR+LL EEG+D++EPQ GLLRV+IY
Sbjct:    1 MSLTKKASEPKLSGTS-IKPTTLNPHAAEFVPFTLRSPS-SGGTSTLDTRLLASSSSVGKAVL-DRTESSASHHSDEEARQFWSHQLPDDITPDFGLMTQDDNSYGSGSLSLANLSLFDGNEAEKFPSASGG-YGFSDQTGLASHNANGNSLADKSRYPISSFGEDPQRQSFMQLSPKPWDKQIMNAEQLLGNDRERNPFSGKSRHGFVNDMITESP--GDMEVNPVDFLASQFPGFAAESLAEVYFANGCDLQLTIEMLTQLELQVDGGLNQNISPKTYAPPSLTPMDFPALSISNSHGIPAQFGGDDLQQTGNHYQSPEKDNMFFFKSGPSVSQPGAIDYVSAVRKLASQDSG-MWKYERNDSADSSIGSSRNSGA----YKSGRGRSIYSDKLQSRAQTRPAPVWVETGDAVGNMYSELREEARDYARLRNVYFEQARQAYLVGNKALAKELSVKGQLHNMQMKAAHGKAQEAIYRQRNPVG---QGNSRGNERMIDLHGLHVSEALQVLKHELSVLRSTARATQERLQIYICVGTGHHTRGSRTPARLPVAVQRYLLEEEGLDYSEPQAGLLRVIIY 567
[Close]
BLAST of LR48_mrnaVigan04g230100 vs. DB:Swiss
Match: N4BP2_HUMAN (NEDD4-binding protein 2 OS=Homo sapiens OX=9606 GN=N4BP2 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 8.945e-12
Identity = 53/164 (32.32%), Postives = 86/164 (52.44%), Query Frame = 1 
Query: 1249 YSELREEARDHACLRNAYFEQARQAYLIGNKALAKELSAKGQLHNMHMKAAHGKAQESIYRQRNAVASEMQGNGRGHERIIDLHGLHAGEAIHVLKHELSVLKSTAIAAEQ---RLQVYICVGTGHHTRGSRTPARLPIAVQRFLLEEGIDFTEPQPGLLRVVI 1731
            Y + R EA  H   R   + +A++AY IG K +A   + +G LH   MK A+  A   I+ + N  AS +  N      ++DLHGLH  EA   L+H + VL+      +Q   +  + +  G G+H++G    AR+  AV ++L+     F+E +PG L+V++
Sbjct: 1619 YDDYRAEAFLHQQKRMECYSKAKEAYRIGKKNVATFYAQQGTLHEQKMKEANHLAAIEIFEKVN--ASLLPQN------VLDLHGLHVDEA---LEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGG--VARIKPAVIKYLISHSFRFSEIKPGCLKVML 1769
[Close]
BLAST of LR48_mrnaVigan04g230100 vs. DB:Swiss
Match: Y5872_ARATH (SMR domain-containing protein At5g58720 OS=Arabidopsis thaliana OX=3702 GN=PIPC PE=1 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 4.789e-8
Identity = 46/163 (28.22%), Postives = 80/163 (49.08%), Query Frame = 1 
Query: 1249 YSELREEARDHACLRNAYFEQARQAYLIGNKALAKELSAKGQLHNMHMKAAHGKAQESIYRQRNAVASEMQGNGRGHERI--IDLHGLHAGEAIHVLKHELSVLKSTAIAAEQRLQVYICVGTGHHTRGSRTPARLPIAVQRFLLEEGIDFTEPQPGLLRVVI 1731
            Y ELR+ A D   +  +Y+++A +AY  G +A A  LS KG++ +   + A  +A + I+  RN          +G E +  IDLHG H   A+ +LK  L +L  + + + Q L+V    G     +     +++  +V + L  EG+ + E   G L + +
Sbjct:  356 YHELRKGANDQWNVTKSYYQKAAEAYSKGGRAHAAYLSDKGRVASKQAQRADERASQDIFVARN----------KGIENVVTIDLHGQHVKPAMKLLK--LHLLFGSYVPSIQTLRVITGCGASGFGK-----SKVKQSVVKLLEREGVRYCEENRGTLLIKL 501
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan04g230100 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 3
Match NameE-valueIdentityDescription
CID7_ARATH0.000e+057.31Polyadenylate-binding protein-interacting protein ... [more]
N4BP2_HUMAN8.945e-1232.32NEDD4-binding protein 2 OS=Homo sapiens OX=9606 GN... [more]
Y5872_ARATH4.789e-828.22SMR domain-containing protein At5g58720 OS=Arabido... [more]
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InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013899Domain of unknown function DUF1771SMARTSM01162DUF1771_2coord: 416..481
e-value: 1.0E-21
score: 88.2
IPR013899Domain of unknown function DUF1771PFAMPF08590DUF1771coord: 417..480
e-value: 2.5E-17
score: 62.9
IPR002625Smr domainSMARTSM00463SMR_2coord: 494..578
e-value: 3.2E-16
score: 69.9
IPR002625Smr domainPROSITEPS50828SMRcoord: 497..578
score: 15.955
NoneNo IPR availableGENE3D3.30.1370.110coord: 464..578
e-value: 3.8E-21
score: 76.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
IPR041806Polyadenylate-binding protein-interacting protein 5/6/7, CUE domainCDDcd14371CUE_CID7_likecoord: 224..265
e-value: 8.79328E-18
score: 74.9888
IPR036063Smr domain superfamilySUPERFAMILY160443SMR domain-likecoord: 495..576

Sequences
The following sequences are available for this feature:

mRNA sequence

>LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g230100; organism=Vigna angularis; type=mRNA; length=4053bp
ATGAACTTATCCAAGAAAGGATCCCAAACGGATGCAAAGCTATTAAGCCC
TAACAAGGCAACAACTCTGAATCCAAATGCAGCAGAGTTTATTCCTTTTG
CCCTCAGATCATCATCATTACCTGGAACTACCAGCTCGGTAGATGCAACA
GCAGGGCTTTCGGCTGCTGGAGCTCTTGGGAAAGCAGTTTTAGATAGATC
AGAATCATCCATTTCAAATAATTCTGATGATGAGGTGCACCAATACTGGC
GATGTCAGCTCCCTGATGATATTACCCCTGATTTCAAGGTCATGGGAGAA
GATGAATCTCAAGGTCTAGATGATCTTCCTTTAGCAGGTTTATCCATACA
TGAGGACAATGAAGCCTCAAGGTTTCCTTCTTCCAAAGGAAGTAAATATA
TAATAAATGAGCAGGAGGAAATATCTCAACTGCATAATAATGGCAATAGC
TTTGTGGATAAAGTAGGGTTTTCTCATTCAAGCTACAGGGAGGACCCATC
TTCTACAAGCTTTTTGAATGCTCTGGCAAAGCCTTGGGAGGGGCCAATTG
GGAGCGCTGACCAGCTTGTTAGCAGTGGTCAAGATGGGCTTGCTTATGAT
GACAACAGTGGACATGGATACTTAAATGATGTTTTGGCTGAAAATGCAAT
TATGGATGATACTGATATGAATCCTTTGGAGTATTTAGCTTCCATGTTCC
CTGGTTTTGCAGCAGAAAGCCTCGCAGAAGCTTACTTTGCCAATGGATGT
GATTTACATCTGACCACCGAGATGCTCAGTCAGTTAGAGGTAGGTTGATT
TTAATATATTAACTGACATGCTGTCAAACAATGATTCCTTATAAGCTCTA
TCTCATGCATTTGATTGTGAAAATGGATGTGTTGTCACTTATATTTATGG
TCAACATCTATCTTCTGCTAGTTGCAATGCAGTATGCTCTAGTGCATTTG
AATAAACTTTTCTGGAAACACATATAGGAGAAGAACATTGAGGTGAAGTG
AAACGAATCAAACTTTTCCCATGGATTAAAATCAACTCATTTCCTCAACT
TTTTCTAGAATCATTTACATCATTCCACGAGTTGATTTCAATTTATGGTA
AAAGCTCAACTCGTCTTACTCCGTAATTATTTTTAGTCTTCTCATGTATG
TTTTTGTTGAGAAGTTTATCCATATTAACTCTTAATACAAGGCTAAGTAT
GATGGGATGGATACTAAGTATTTAGAGCAATACCTGTGCCTTGTTTTGGC
AGGGAAGATCCGGCTCTCTATAAAGTTGTGAAGTGATTCAGGTCCAACCT
ACCTCTAGCTTCCAATTTCTAATTGCAGTTGCCTGGTACTGGGGGAGGGT
GTTGTTAGAGATGATAATCTTGTTGTTGTTATTGTTTCTTTTCTTTTTTT
TAAATAATTTTGATCTACGTTCTGATATTAATTGTGATTATAGTCCCCTT
TTCATGTTATCAATGGGCCATTGGCATTTTATGAGACCTACACATATATT
TGTATATGATCAAGCAGTACAATTTGTTCTCCATTTCGTGGAATCCTATA
GTCATCTCTTATGATTAGTAATTATTTCTCTGGAATATTTTTTAACCTAG
GAGCTTTATGTTGATAATCTCTCTCTCTTCACCTGTTCAAATTTGTAGCA
GCTTCAAGTTGATGGTGGTTTCAATCAAACTTTGAATTCAAAGACTCTGT
CAGCTCCCAATCTGAGTGCAATGGACTTTCCTGCACTTACTTCACCAGAT
GGCCAGGCTGCTTCAGTTAAATACGTGGTTGATAATGTCCAGCAAAGTCG
AAATCCTTACCAGTCATTTGACAGTGATGTGATGCTTTTCAAATCTAGTT
CTTCAATTCCATCTAGAGGTGCTGTTGACTTTGCTTCAGCTGTTAGAAAG
TTGGCTTCTCAGGATTCTGGTGGTATTTGGAAGTATGACAAGAATGGCTC
TGGTGATGCTGCTATAGGTTCAAGTAGGAATTCAAATGTTTTGGGTAGTG
GCTACAATGGTGGACAGGCCAGAGCACACTTTGGTGATCGATTGCAGAAC
CGTGGCTCAGCTCGAGCAGCTCCAATTTGGCTTGAAACTGGTGATGCCGT
TGGTAAGTACTTATGTTAAAAGGCTTCAATTGTGGGGTGTTTTCTCTGTG
CACTATTTTCGTTAACAATTTTGCATGGCAGCAAATATGTATTCAGAGCT
GCGGGAAGAGGCTCGTGATCATGCATGCTTACGTAATGCATATTTTGAGC
AGGTGGGTTTTCAAATTCATGCTTTGGTGAAGTTACTGGCTATCAAAATT
TAAAATAATGGTTTTGGCTACATACCTCTTGATTTGATTCTTTTGGCATT
CCCTTGACTTTCTCAACTCCTTTTAATGTGTGTGTGATTCAATAGGTACT
GTTGGGATGATACTAGTTCAAGAATCAGATAACAAAGTCTCTTCCAGAGG
CATTGGTCTTGAATCTATTTCTTCGTTTAATTTTAATTCGTTTCTAATTT
GAAACAGGCTCGTCAAGCTTACCTTATTGGTAATAAAGCCCTGGCAAAGG
AACTAAGTGCTAAAGGGCAGCTTCACAATATGCATATGAAGGCAGCTCAT
GGAAAAGCTCAAGAATCCATTTACCGTCAGAGGTTTGTTGTTCCCCAATG
CTTCCCTTCTCGCTCTCGATTTAAGTTTGGATTATAAAAAAACTTACACT
CCCTCTGTTCCAGTATCATAGTTGTTTAAGGTTGTTTCACCCAAACTAAG
GAAGCATTTAGATTCGTTAATCTTCAATGCAATTTTACTCCTTCTATACC
TATTATACCCCTTTAAGTTTTCTCTAGCCATATTAATTGAATTAAATTTT
TGCACTTTTATCGCCCAAACGCACCATTTATTTGTTCTGTATTTCTTATT
ATTTATAACTCACTTATTCTCTCTCCATATCGAAGATAAGTAACATTTGT
ACTACAAGTACTATTTTTTGCATTTCTCTCACTAATATATAACTACAAGC
AGTATCTCATTTTATTTTGTTATAAATTATTTTATTTTATTATCTTTCGA
AGAGTTATTATTTTAAAAAAAAAATTGATAAAAATTAAACTTCCCTTTTG
GTGACATGACATTATTTCAACTTCTCTTCTTTAAATCTAAATCCTGGTAA
ATATGATCGCCGATTTTCTTTGTCGGAAATAGGTCACACAAGAAAATTTT
TCTCAATGTGATATAAGTACTGTTTATGCACAAAATGTATTTCATAAAGC
GACTATTATACAGGGACCAAAGGGAGTATTATATGGCATTTTGATGTTAA
AATATTTTGCTACTCCTCAGCAATCTATTATGTATGTTTATTGACACGAA
AGAGTTCACTCTGATGTCTCGACCCTTTTTCGTACTTACCACTTGTTTCT
TTTCCTCAAATGTTTCTTATTGCCGTCCTCACGTCGTTCTGAAGGAGAGT
TATTGTCTCTGACTTATTTAAGATGCGTGAACAATCTGAACCCCTTAAAG
TAGGATTTTGTAATGCCAATTCGTTAGCTGGTTGCTTTGGAAAAAATGCT
CGAGTTGAGAGTACTTTTACGAGTACTTTTAATCCATGGATAACATTAGC
TCGACCTTTTTCTTGGTCACCTCGTGACAGTTTCTCTCTAGAATGGCTAC
CTGGAGTATCATGCTATATTATTGTACGAACCAGAATGTTTATATACATT
GCTCTAAAGTTTTGGGTTCTGCCTCAGTAATTACAAATGTTGATTTTTTC
AGAAACGCAGTTGCTTCAGAGATGCAGGGCAATGGAAGAGGACACGAGAG
GATAATAGACCTACATGGGTTGCATGCGGGTGAAGCCATTCATGTGCTGA
AACATGAGTTGAGTGTGCTGAAAAGCACTGCCATAGCTGCTGAGCAGCGT
TTGCAGGTGTATATTTGTGTGGGCACAGGTCATCATACCAGGGGTTCCCG
CACTCCCGCAAGACTTCCAATAGCTGTACAGCGTTTTCTTCTTGAAGAGG
GCATTGACTTCACGGAACCTCAACCAGGCCTACTTCGCGTTGTGATATAT
TGA
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protein sequence of LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1

>LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=578bp
MNLSKKGSQTDAKLLSPNKATTLNPNAAEFIPFALRSSSLPGTTSSVDAT
AGLSAAGALGKAVLDRSESSISNNSDDEVHQYWRCQLPDDITPDFKVMGE
DESQGLDDLPLAGLSIHEDNEASRFPSSKGSKYIINEQEEISQLHNNGNS
FVDKVGFSHSSYREDPSSTSFLNALAKPWEGPIGSADQLVSSGQDGLAYD
DNSGHGYLNDVLAENAIMDDTDMNPLEYLASMFPGFAAESLAEAYFANGC
DLHLTTEMLSQLELQVDGGFNQTLNSKTLSAPNLSAMDFPALTSPDGQAA
SVKYVVDNVQQSRNPYQSFDSDVMLFKSSSSIPSRGAVDFASAVRKLASQ
DSGGIWKYDKNGSGDAAIGSSRNSNVLGSGYNGGQARAHFGDRLQNRGSA
RAAPIWLETGDAVANMYSELREEARDHACLRNAYFEQARQAYLIGNKALA
KELSAKGQLHNMHMKAAHGKAQESIYRQRNAVASEMQGNGRGHERIIDLH
GLHAGEAIHVLKHELSVLKSTAIAAEQRLQVYICVGTGHHTRGSRTPARL
PIAVQRFLLEEGIDFTEPQPGLLRVVIY
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mRNA from alignment at Chr_4-CM003374.1:32353752..32357804-

Legend: polypeptidestart_codonexonCDSintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g230100; organism=Vigna angularis; type=mRNA; length=4053bp; location=Sequence derived from: Chr_4-CM003374.1:32353752..32357804- (Vigna angularis
ATGAACTTATCCAAGAAAGGATCCCAAACGGATGCAAAGCTATTAAGCCC
TAACAAGGCAACAACTCTGAATCCAAATGCAGCAGAGTTTATTCCTTTTG
CCCTCAGATCATCATCATTACCTGGAACTACCAGCTCGGTAGATGCAACA
GCAGGGCTTTCGGCTGCTGGAGCTCTTGGGAAAGCAGTTTTAGATAGATC
AGAATCATCCATTTCAAATAATTCTGATGATGAGGTGCACCAATACTGGC
GATGTCAGCTCCCTGATGATATTACCCCTGATTTCAAGGTCATGGGAGAA
GATGAATCTCAAGGTCTAGATGATCTTCCTTTAGCAGGTTTATCCATACA
TGAGGACAATGAAGCCTCAAGGTTTCCTTCTTCCAAAGGAAGTAAATATA
TAATAAATGAGCAGGAGGAAATATCTCAACTGCATAATAATGGCAATAGC
TTTGTGGATAAAGTAGGGTTTTCTCATTCAAGCTACAGGGAGGACCCATC
TTCTACAAGCTTTTTGAATGCTCTGGCAAAGCCTTGGGAGGGGCCAATTG
GGAGCGCTGACCAGCTTGTTAGCAGTGGTCAAGATGGGCTTGCTTATGAT
GACAACAGTGGACATGGATACTTAAATGATGTTTTGGCTGAAAATGCAAT
TATGGATGATACTGATATGAATCCTTTGGAGTATTTAGCTTCCATGTTCC
CTGGTTTTGCAGCAGAAAGCCTCGCAGAAGCTTACTTTGCCAATGGATGT
GATTTACATCTGACCACCGAGATGCTCAGTCAGTTAGAGGTAGGTTGATT
TTAATATATTAACTGACATGCTGTCAAACAATGATTCCTTATAAGCTCTA
TCTCATGCATTTGATTGTGAAAATGGATGTGTTGTCACTTATATTTATGG
TCAACATCTATCTTCTGCTAGTTGCAATGCAGTATGCTCTAGTGCATTTG
AATAAACTTTTCTGGAAACACATATAGGAGAAGAACATTGAGGTGAAGTG
AAACGAATCAAACTTTTCCCATGGATTAAAATCAACTCATTTCCTCAACT
TTTTCTAGAATCATTTACATCATTCCACGAGTTGATTTCAATTTATGGTA
AAAGCTCAACTCGTCTTACTCCGTAATTATTTTTAGTCTTCTCATGTATG
TTTTTGTTGAGAAGTTTATCCATATTAACTCTTAATACAAGGCTAAGTAT
GATGGGATGGATACTAAGTATTTAGAGCAATACCTGTGCCTTGTTTTGGC
AGGGAAGATCCGGCTCTCTATAAAGTTGTGAAGTGATTCAGGTCCAACCT
ACCTCTAGCTTCCAATTTCTAATTGCAGTTGCCTGGTACTGGGGGAGGGT
GTTGTTAGAGATGATAATCTTGTTGTTGTTATTGTTTCTTTTCTTTTTTT
TAAATAATTTTGATCTACGTTCTGATATTAATTGTGATTATAGTCCCCTT
TTCATGTTATCAATGGGCCATTGGCATTTTATGAGACCTACACATATATT
TGTATATGATCAAGCAGTACAATTTGTTCTCCATTTCGTGGAATCCTATA
GTCATCTCTTATGATTAGTAATTATTTCTCTGGAATATTTTTTAACCTAG
GAGCTTTATGTTGATAATCTCTCTCTCTTCACCTGTTCAAATTTGTAGCA
GCTTCAAGTTGATGGTGGTTTCAATCAAACTTTGAATTCAAAGACTCTGT
CAGCTCCCAATCTGAGTGCAATGGACTTTCCTGCACTTACTTCACCAGAT
GGCCAGGCTGCTTCAGTTAAATACGTGGTTGATAATGTCCAGCAAAGTCG
AAATCCTTACCAGTCATTTGACAGTGATGTGATGCTTTTCAAATCTAGTT
CTTCAATTCCATCTAGAGGTGCTGTTGACTTTGCTTCAGCTGTTAGAAAG
TTGGCTTCTCAGGATTCTGGTGGTATTTGGAAGTATGACAAGAATGGCTC
TGGTGATGCTGCTATAGGTTCAAGTAGGAATTCAAATGTTTTGGGTAGTG
GCTACAATGGTGGACAGGCCAGAGCACACTTTGGTGATCGATTGCAGAAC
CGTGGCTCAGCTCGAGCAGCTCCAATTTGGCTTGAAACTGGTGATGCCGT
TGGTAAGTACTTATGTTAAAAGGCTTCAATTGTGGGGTGTTTTCTCTGTG
CACTATTTTCGTTAACAATTTTGCATGGCAGCAAATATGTATTCAGAGCT
GCGGGAAGAGGCTCGTGATCATGCATGCTTACGTAATGCATATTTTGAGC
AGGTGGGTTTTCAAATTCATGCTTTGGTGAAGTTACTGGCTATCAAAATT
TAAAATAATGGTTTTGGCTACATACCTCTTGATTTGATTCTTTTGGCATT
CCCTTGACTTTCTCAACTCCTTTTAATGTGTGTGTGATTCAATAGGTACT
GTTGGGATGATACTAGTTCAAGAATCAGATAACAAAGTCTCTTCCAGAGG
CATTGGTCTTGAATCTATTTCTTCGTTTAATTTTAATTCGTTTCTAATTT
GAAACAGGCTCGTCAAGCTTACCTTATTGGTAATAAAGCCCTGGCAAAGG
AACTAAGTGCTAAAGGGCAGCTTCACAATATGCATATGAAGGCAGCTCAT
GGAAAAGCTCAAGAATCCATTTACCGTCAGAGGTTTGTTGTTCCCCAATG
CTTCCCTTCTCGCTCTCGATTTAAGTTTGGATTATAAAAAAACTTACACT
CCCTCTGTTCCAGTATCATAGTTGTTTAAGGTTGTTTCACCCAAACTAAG
GAAGCATTTAGATTCGTTAATCTTCAATGCAATTTTACTCCTTCTATACC
TATTATACCCCTTTAAGTTTTCTCTAGCCATATTAATTGAATTAAATTTT
TGCACTTTTATCGCCCAAACGCACCATTTATTTGTTCTGTATTTCTTATT
ATTTATAACTCACTTATTCTCTCTCCATATCGAAGATAAGTAACATTTGT
ACTACAAGTACTATTTTTTGCATTTCTCTCACTAATATATAACTACAAGC
AGTATCTCATTTTATTTTGTTATAAATTATTTTATTTTATTATCTTTCGA
AGAGTTATTATTTTAAAAAAAAAATTGATAAAAATTAAACTTCCCTTTTG
GTGACATGACATTATTTCAACTTCTCTTCTTTAAATCTAAATCCTGGTAA
ATATGATCGCCGATTTTCTTTGTCGGAAATAGGTCACACAAGAAAATTTT
TCTCAATGTGATATAAGTACTGTTTATGCACAAAATGTATTTCATAAAGC
GACTATTATACAGGGACCAAAGGGAGTATTATATGGCATTTTGATGTTAA
AATATTTTGCTACTCCTCAGCAATCTATTATGTATGTTTATTGACACGAA
AGAGTTCACTCTGATGTCTCGACCCTTTTTCGTACTTACCACTTGTTTCT
TTTCCTCAAATGTTTCTTATTGCCGTCCTCACGTCGTTCTGAAGGAGAGT
TATTGTCTCTGACTTATTTAAGATGCGTGAACAATCTGAACCCCTTAAAG
TAGGATTTTGTAATGCCAATTCGTTAGCTGGTTGCTTTGGAAAAAATGCT
CGAGTTGAGAGTACTTTTACGAGTACTTTTAATCCATGGATAACATTAGC
TCGACCTTTTTCTTGGTCACCTCGTGACAGTTTCTCTCTAGAATGGCTAC
CTGGAGTATCATGCTATATTATTGTACGAACCAGAATGTTTATATACATT
GCTCTAAAGTTTTGGGTTCTGCCTCAGTAATTACAAATGTTGATTTTTTC
AGAAACGCAGTTGCTTCAGAGATGCAGGGCAATGGAAGAGGACACGAGAG
GATAATAGACCTACATGGGTTGCATGCGGGTGAAGCCATTCATGTGCTGA
AACATGAGTTGAGTGTGCTGAAAAGCACTGCCATAGCTGCTGAGCAGCGT
TTGCAGGTGTATATTTGTGTGGGCACAGGTCATCATACCAGGGGTTCCCG
CACTCCCGCAAGACTTCCAATAGCTGTACAGCGTTTTCTTCTTGAAGAGG
GCATTGACTTCACGGAACCTCAACCAGGCCTACTTCGCGTTGTGATATAT
TGA
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Coding sequence (CDS) from alignment at Chr_4-CM003374.1:32353752..32357804-

>LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g230100_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g230100; organism=Vigna angularis; type=CDS; length=1737bp; location=Sequence derived from: Chr_4-CM003374.1:32353752..32357804- (Vigna angularis
ATGAACTTATCCAAGAAAGGATCCCAAACGGATGCAAAGCTATTAAGCCC
TAACAAGGCAACAACTCTGAATCCAAATGCAGCAGAGTTTATTCCTTTTG
CCCTCAGATCATCATCATTACCTGGAACTACCAGCTCGGTAGATGCAACA
GCAGGGCTTTCGGCTGCTGGAGCTCTTGGGAAAGCAGTTTTAGATAGATC
AGAATCATCCATTTCAAATAATTCTGATGATGAGGTGCACCAATACTGGC
GATGTCAGCTCCCTGATGATATTACCCCTGATTTCAAGGTCATGGGAGAA
GATGAATCTCAAGGTCTAGATGATCTTCCTTTAGCAGGTTTATCCATACA
TGAGGACAATGAAGCCTCAAGGTTTCCTTCTTCCAAAGGAAGTAAATATA
TAATAAATGAGCAGGAGGAAATATCTCAACTGCATAATAATGGCAATAGC
TTTGTGGATAAAGTAGGGTTTTCTCATTCAAGCTACAGGGAGGACCCATC
TTCTACAAGCTTTTTGAATGCTCTGGCAAAGCCTTGGGAGGGGCCAATTG
GGAGCGCTGACCAGCTTGTTAGCAGTGGTCAAGATGGGCTTGCTTATGAT
GACAACAGTGGACATGGATACTTAAATGATGTTTTGGCTGAAAATGCAAT
TATGGATGATACTGATATGAATCCTTTGGAGTATTTAGCTTCCATGTTCC
CTGGTTTTGCAGCAGAAAGCCTCGCAGAAGCTTACTTTGCCAATGGATGT
GATTTACATCTGACCACCGAGATGCTCAGTCAGTTAGAGCTTCAAGTTGA
TGGTGGTTTCAATCAAACTTTGAATTCAAAGACTCTGTCAGCTCCCAATC
TGAGTGCAATGGACTTTCCTGCACTTACTTCACCAGATGGCCAGGCTGCT
TCAGTTAAATACGTGGTTGATAATGTCCAGCAAAGTCGAAATCCTTACCA
GTCATTTGACAGTGATGTGATGCTTTTCAAATCTAGTTCTTCAATTCCAT
CTAGAGGTGCTGTTGACTTTGCTTCAGCTGTTAGAAAGTTGGCTTCTCAG
GATTCTGGTGGTATTTGGAAGTATGACAAGAATGGCTCTGGTGATGCTGC
TATAGGTTCAAGTAGGAATTCAAATGTTTTGGGTAGTGGCTACAATGGTG
GACAGGCCAGAGCACACTTTGGTGATCGATTGCAGAACCGTGGCTCAGCT
CGAGCAGCTCCAATTTGGCTTGAAACTGGTGATGCCGTTGCAAATATGTA
TTCAGAGCTGCGGGAAGAGGCTCGTGATCATGCATGCTTACGTAATGCAT
ATTTTGAGCAGGCTCGTCAAGCTTACCTTATTGGTAATAAAGCCCTGGCA
AAGGAACTAAGTGCTAAAGGGCAGCTTCACAATATGCATATGAAGGCAGC
TCATGGAAAAGCTCAAGAATCCATTTACCGTCAGAGAAACGCAGTTGCTT
CAGAGATGCAGGGCAATGGAAGAGGACACGAGAGGATAATAGACCTACAT
GGGTTGCATGCGGGTGAAGCCATTCATGTGCTGAAACATGAGTTGAGTGT
GCTGAAAAGCACTGCCATAGCTGCTGAGCAGCGTTTGCAGGTGTATATTT
GTGTGGGCACAGGTCATCATACCAGGGGTTCCCGCACTCCCGCAAGACTT
CCAATAGCTGTACAGCGTTTTCTTCTTGAAGAGGGCATTGACTTCACGGA
ACCTCAACCAGGCCTACTTCGCGTTGTGATATATTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR013899DUF1771
IPR002625Smr_dom
IPR041806CID5/6/7_CUE
IPR036063Smr_dom_sf