LR48_mrnaVigan04g230500
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Homology
BLAST of LR48_mrnaVigan04g230500 vs. DB:Swiss
Match: ABHD6_HUMAN (Monoacylglycerol lipase ABHD6 OS=Homo sapiens OX=9606 GN=ABHD6 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 8.027e-14 Identity = 77/316 (24.37%), Postives = 137/316 (43.35%), Query Frame = 1 Query: 94 VDHETTVHFWAPTNRTAQKPAVVLIHGFGPAAIWQWRQQVQFLAPHFNVYVPDLIFF-GGXXXXXXXXXXXFQAASVGKLLDKLKVEK--FQVVGTSYGGMVAYNLAKMFGEERVEKVVIASSGVNMKRSNNVALVQR-------AELEKIEDLMLPATPQQLRKLMSLSVY---RTPQ---------FLPHFLLNDFLHKLYSENRKEKKELLKGLTIGKDESSTLSPLQQGVLIVWGEQDQIFPVQMARELKEXXXXXXXXXXXXXXXXXXXXHLSVRIISRKARLELIKEASHVPQMEKPREFNNILLNFLQA 975 V HE ++ R KP+++++HGF A W V+FL + ++ D+ G + S+ + S Q + + ++ LK+ K F +VGTS GG VA A + + ++ +G+ N VQR A +EKI ++P+TP+++ +++ L Y + PQ +PH N+F KL+ E EK ++ ++ P Q I+WG+QDQ+ V A L + ++EL++ H ME+PR+ ++++FL + Sbjct: 53 VHHEDYQFCYSFRGRPGHKPSILMLHGFS-AHKDMWLSVVKFLPKNLHLVCVDMPGHEGTTRSSLDDLSIDGQVKRIHQFVECLKLNKKPFHLVGTSMGGQVAGVYAAYYPSDVSSLCLVCPAGLQYSTDNQ--FVQRLKELQGSAAVEKIP--LIPSTPEEMSEMLQLCSYVRFKVPQQILQGLVDVRIPH---NNFYRKLFLEIVSEKSR----YSLHQNMDKIKVPTQ----IIWGKQDQVLDVSGADMLAKSIA--------------------------NCQVELLENCGHSVVMERPRKTAKLIIDFLAS 326
BLAST of LR48_mrnaVigan04g230500 vs. DB:Swiss
Match: ABHD6_BOVIN (Monoacylglycerol lipase ABHD6 OS=Bos taurus OX=9913 GN=ABHD6 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.600e-13 Identity = 76/314 (24.20%), Postives = 135/314 (42.99%), Query Frame = 1 Query: 94 VDHETTVHFWAPTNRTAQKPAVVLIHGFGPAAIWQWRQQVQFLAPHFNVYVPDLIFF-GGXXXXXXXXXXXFQAASVGKLLDKLKVEK--FQVVGTSYGGMVAYNLAKMFGEERVEKVVIASSGVNMKRSNNVA-----LVQRAELEKIEDLMLPATPQQLRKLMSLSVY---RTPQ---------FLPHFLLNDFLHKLYSENRKEKKELLKGLTIGKDESSTLSPLQQGVLIVWGEQDQIFPVQMARELKEXXXXXXXXXXXXXXXXXXXXHLSVRIISRKARLELIKEASHVPQMEKPREFNNILLNFLQA 975 V HE ++ R KP+++++HGF A W V+FL + ++ D+ G + S+ + S Q + + ++ LK+ K F +VGTS GG VA A + + ++ +G+ N L + A +EKI ++P TP+++ +++ L Y + PQ +PH N F KL+ E EK ++ ++ P Q I+WG+QDQ+ V A L + +++EL++ H ME+PR+ +L++FL + Sbjct: 53 VRHEDYQFCYSFRGRPGHKPSILMLHGFS-AHKDMWLSMVKFLPKNLHLVCVDMPGHEGTTRSSLDDLSIDGQVKRIHQFVECLKLNKKPFHLVGTSMGGHVAGVYAAHYPSDVCSLSLVCPAGLQYSTDNKFVQRLKELQESAAVEKIP--LIPTTPKEMSEMLQLCSYVRFKVPQQILQGLVDVRIPH---NTFYRKLFLEIVSEKSR----YSLHQNMDKIKVPTQ----IIWGKQDQVLDVSGADMLAKSIA--------------------------NSQVELLENCGHSVVMERPRKTAKLLVDFLAS 326
BLAST of LR48_mrnaVigan04g230500 vs. DB:Swiss
Match: ABHD6_RAT (Monoacylglycerol lipase ABHD6 OS=Rattus norvegicus OX=10116 GN=Abhd6 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.379e-12 Identity = 74/316 (23.42%), Postives = 138/316 (43.67%), Query Frame = 1 Query: 94 VDHETTVHFWAPTNRTAQKPAVVLIHGFGPAAIWQWRQQVQFLAPHFNVYVPDLIFFGGXXXXXXXXXXXF-QAASVGKLLDKLKVEK--FQVVGTSYGGMVAYNLAKMFGEERVEKVVIASSGVNMKRSNNVALVQRAELEKIEDL-------MLPATPQQLRKLMSLSVY---RTPQ---------FLPHFLLNDFLHKLYSENRKEKKELLKGLTIGKDESSTLSPLQQGVLIVWGEQDQIFPVQMARELKEXXXXXXXXXXXXXXXXXXXXHLSVRIISRKARLELIKEASHVPQMEKPREFNNILLNFLQA 975 V HE ++ R KP+V+++HGF A W V+FL + ++ D+ G++ +S + Q + + ++ LK+ K F ++GTS GG VA A + + ++ +G+ N VQR L+++ED ++P+TP+++ +++ L Y + PQ +PH N F KL+ E EK ++ ++ P Q I+WG+QDQ+ V A L + +++E+++ H ME+PR+ ++++FL + Sbjct: 53 VHHEDYQFCYSFRGRPGHKPSVLMLHGFS-AHKDMWLSVVKFLPKNLHLVCVDMPGHEGTTRSSLDDLSIVGQVKRIHQFVECLKLNKKPFHLIGTSMGGNVAGVYAAYYPSDVCSLSLVCPAGLQYSTDNR--FVQR--LKELEDSAATQKIPLIPSTPEEMSEMLQLCSYVRFKVPQQILQGLVDVRIPH---NSFYRKLFLEIVSEKSR----YSLHENMDKIKVPTQ----IIWGKQDQVLDVSGADILAKSIT--------------------------NSQVEVLENCGHSVVMERPRKTAKLVVDFLAS 326
BLAST of LR48_mrnaVigan04g230500 vs. DB:Swiss
Match: ABHD6_MOUSE (Monoacylglycerol lipase ABHD6 OS=Mus musculus OX=10090 GN=Abhd6 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 4.541e-12 Identity = 72/314 (22.93%), Postives = 136/314 (43.31%), Query Frame = 1 Query: 100 HETTVHFWAPTNRTAQKPAVVLIHGFGPAAIWQWRQQVQFLAPHFNVYVPDLIFFGGXXXXXXXXXXXF-QAASVGKLLDKLKVEK--FQVVGTSYGGMVAYNLAKMFGEERVEKVVIASSGVNMKRSNNVALVQR-------AELEKIEDLMLPATPQQLRKLMSLSVY---RTPQ---------FLPHFLLNDFLHKLYSENRKEKKELLKGLTIGKDESSTLSPLQQGVLIVWGEQDQIFPVQMARELKEXXXXXXXXXXXXXXXXXXXXHLSVRIISRKARLELIKEASHVPQMEKPREFNNILLNFLQA 975 HE ++ R KP+++++HGF A W V+FL + ++ D+ G++ +S + Q + + ++ LK+ K F ++GTS GG VA A + + ++ +G+ N VQR A ++KI ++P+TP+++ +++ L Y + PQ +PH N F KL+ E EK ++ ++ P Q I+WG+QDQ+ V A L + +++E+++ H ME+PR+ ++++FL + Sbjct: 55 HEDYQFCYSFRGRPGHKPSILMLHGFS-AHKDMWLSVVKFLPKNLHLVCVDMPGHEGTTRSSLDDLSIVGQVKRIHQFVECLKLNKKPFHLIGTSMGGHVAGVYAAYYPSDVCSLSLVCPAGLQYSTDN--PFVQRLKELEESAAIQKIP--LIPSTPEEMSEMLQLCSYVRFKVPQQILQGLVDVRIPH---NSFYRKLFLEIVNEKSR----YSLHENMDKIKVPTQ----IIWGKQDQVLDVSGADILAKSIS--------------------------NSQVEVLENCGHSVVMERPRKTAKLIVDFLAS 326
BLAST of LR48_mrnaVigan04g230500 vs. DB:Swiss
Match: BIOH_VIBCB (Pimeloyl-[acyl-carrier protein] methyl ester esterase OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) OX=338187 GN=bioH PE=3 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 3.288e-9 Identity = 60/220 (27.27%), Postives = 101/220 (45.91%), Query Frame = 1 Query: 142 AQKPAVVLIHGFG-PAAIWQWRQQVQFLAPHFNVYVPDLIFFGGXXXXXXXXXXXFQAASVGKLLDKLKVEKFQVVGTSYGGMVAYNLAKMFGEERVEKVVIASSGVNMKRSNNVALVQRAELEKIEDLMLPATPQQLRKLMSLSVYRTPQFLPHFLLNDFLHKLYSENRKEKKELLKGLTIGKDES--STLSPLQQGVLIVWGEQDQIFPVQMARELKE 792 Q P +VL+HG+G A+WQ Q V+ L P+F V+V DL +G S+ + +E A + L+ + EK +G S GG+VA ++A + +RV K++ +S +Q L D +L + + M+L +P + + S + LL GL I D L+ L +L ++G D + P+++A +L E Sbjct: 11 GQGPDLVLLHGWGMNGAVWQ--QTVESLQPYFRVHVVDLPGYGHSAESHAE-----DLAKIADLVLQDAPEKAVWLGWSLGGLVATHIA-LNAPQRVSKLITVASSPKFAAERPWRGIQPNVLTAFTDQLLEDFSVTIERFMALQAMGSPSARKD--VKQLKQAVLSRPQPNPDSLLVGLNILADVDLRDALTSLSMPMLRLYGRLDGLVPIKVASDLNE 220
BLAST of LR48_mrnaVigan04g230500 vs. DB:Swiss
Match: HSAD_MYCTU (4,5:9,10-diseco-3-hydroxy-5,9,17-trioxoandrosta-1(10),2-diene-4-oate hydrolase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=hsaD PE=1 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 3.467e-9 Identity = 68/301 (22.59%), Postives = 122/301 (40.53%), Query Frame = 1 Query: 88 LDVDHETTVHFWAPTNRTAQKPAVVLIHGFGP-AAIW-QWRQQVQFLAPHFNVYVPDLIFFG-GXXXXXXXXXXXFQAASVGKLLDKLKVEKFQVVGTSYGGMVAYNLAKMFGEERVEKVVIASSGVNMKRSNNVALVQRAELEKIEDLMLPATPQQLRKLMSLSVYRTPQFLPHFLLNDFLHKLYSENRKEKKELLKGLTIGKDESSTL----SPLQQGVLIVWGEQDQIFPVQMARELKEXXXXXXXXXXXXXXXXXXXXHLSVRIISRKARLELIKEASHVPQMEKPREFNNILLNFL 969 +DVD +H+ Q VVL+HG GP AA W + + + LA HF+V D +G + + A ++ L D+L + + +VG S GG A A + V++ G+++ N A ++++ + T + L + + VY P + F E+ + + K E+ + L+Q VL++WG +D++ P+ A ++++ I R A+L + + H Q+EK EFN + + FL Sbjct: 18 VDVDGPLKLHYHEAGVGNDQ--TVVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRAEHGQFNRYAAMALKGLFDQLGLGRVPLVGNSLGGGTAVRFALDYPARAGRLVLMGPGGLSI---NLFAPDPTEGVKRLSKFSVAPTRENLEAFLRVMVYDKNLITPELVDQRFALASTPESLTATRAMGKSFAGADFEAGMMWREVYRLRQPVLLIWGREDRVNPLDGAL-------------------------VALKTIPR-AQLHVFGQCGHWVQVEKFDEFNKLTIEFL 287
BLAST of LR48_mrnaVigan04g230500 vs. DB:Swiss
Match: HSAD_MYCTO (4,5:9,10-diseco-3-hydroxy-5,9,17-trioxoandrosta-1(10),2-diene-4-oate hydrolase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=hsaD PE=3 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 3.467e-9 Identity = 68/301 (22.59%), Postives = 122/301 (40.53%), Query Frame = 1 Query: 88 LDVDHETTVHFWAPTNRTAQKPAVVLIHGFGP-AAIW-QWRQQVQFLAPHFNVYVPDLIFFG-GXXXXXXXXXXXFQAASVGKLLDKLKVEKFQVVGTSYGGMVAYNLAKMFGEERVEKVVIASSGVNMKRSNNVALVQRAELEKIEDLMLPATPQQLRKLMSLSVYRTPQFLPHFLLNDFLHKLYSENRKEKKELLKGLTIGKDESSTL----SPLQQGVLIVWGEQDQIFPVQMARELKEXXXXXXXXXXXXXXXXXXXXHLSVRIISRKARLELIKEASHVPQMEKPREFNNILLNFL 969 +DVD +H+ Q VVL+HG GP AA W + + + LA HF+V D +G + + A ++ L D+L + + +VG S GG A A + V++ G+++ N A ++++ + T + L + + VY P + F E+ + + K E+ + L+Q VL++WG +D++ P+ A ++++ I R A+L + + H Q+EK EFN + + FL Sbjct: 18 VDVDGPLKLHYHEAGVGNDQ--TVVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRAEHGQFNRYAAMALKGLFDQLGLGRVPLVGNSLGGGTAVRFALDYPARAGRLVLMGPGGLSI---NLFAPDPTEGVKRLSKFSVAPTRENLEAFLRVMVYDKNLITPELVDQRFALASTPESLTATRAMGKSFAGADFEAGMMWREVYRLRQPVLLIWGREDRVNPLDGAL-------------------------VALKTIPR-AQLHVFGQCGHWVQVEKFDEFNKLTIEFL 287
BLAST of LR48_mrnaVigan04g230500 vs. DB:Swiss
Match: ABH6B_XENLA (Monoacylglycerol lipase abhd6-B OS=Xenopus laevis OX=8355 GN=abhd6-b PE=2 SV=1) HSP 1 Score: 56.9954 bits (136), Expect = 6.859e-8 Identity = 77/335 (22.99%), Postives = 137/335 (40.90%), Query Frame = 1 Query: 28 SAYGLYLRRCFTAAGLSSYTLDVDHETTVHFWAPTNRTAQKPAVVLIHGFGPAAIWQWRQQVQFLAPHFNVYVPDLIFFGGXXXXXXXXXXXF-QAASVGKLLDKLKVEK--FQVVGTSYGGMVAYNLAKMFGEERVEKVVIASSGVNMKRSNNVALVQRAELEKIEDL----MLPATPQQLR---KLMSLSVYRTPQ---------FLPHFLLNDFLHKLYSENRKEKKELLKGLTIGKDESSTLSPLQQGVLIVWGEQDQIFPVQMARELKEXXXXXXXXXXXXXXXXXXXXHLSVRIISRKARLELIKEASHVPQMEKPREFNNILLNFLQA 975 S+YG Y + C+TA G + KP+V+++HGF A W V+FL + ++ D+ G+S ++ + Q + + ++ + + K F +VGTS GG VA A +I +G+ M + L Q LEK D ++P+T ++ +L S ++ PQ +PH N+F KL+ EK ++ ++ + ++P Q I+WG+QDQ+ V A L R ++E+++ H ME+PR+ ++ +FL + Sbjct: 53 SSYGNY-KFCYTARG---------------------KPGNKPSVLMLHGFS-AHKDMWLGMVKFLPKNLHLVCVDMPGHEGTSRSALDYYSICGQVKRIHQFVESIGLNKKPFHLVGTSMGGNVAGVYAAQHPTHISSLTLICPAGL-MYPIESKFLKQLKVLEKSGDNQRIPLIPSTAGEMEDMLRLCSFVRFKIPQQVLQGLIDERIPH---NEFYRKLFLALVDEKSRH----SLHENMNKIMAPTQ----IIWGKQDQVLDVSGAEVLAGSL--------------------------RGCQVEILENCGHSVVMERPRKSAKLMTDFLSS 326
BLAST of LR48_mrnaVigan04g230500 vs. DB:Swiss
Match: MHPC_PARP8 (2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase OS=Paraburkholderia phymatum (strain DSM 17167 / CIP 108236 / LMG 21445 / STM815) OX=391038 GN=mhpC PE=3 SV=1) HSP 1 Score: 55.4546 bits (132), Expect = 1.597e-7 Identity = 78/318 (24.53%), Postives = 126/318 (39.62%), Query Frame = 1 Query: 61 TAAGLSSYT--LDVDHETTVHFWAPTNRTAQKPAVVLIHGFGPAAI-WQ--WRQQVQFLAPHFNVYVPDLIFFGGXXXXXXXXXXXFQAASVGK-LLDKLKVEKFQVVGTSYGGMVAYNLAKMFGEERVEKVVIASSGVNMKRSNNVALVQRAELEKIEDLMLPATPQQLRKLMSLSVYRTPQFLPHFL---LNDFLHKLYSENRKEKKELLKGLTIG----KDESSTLSPLQQGVLIVWGEQDQIFPVQMARELKEXXXXXXXXXXXXXXXXXXXXHLSVRIISR--KARLELIKEASHVPQMEKPREFNNILLNFL 969 T A S Y L+ E VH+ + A K +VL+HG GP A W +R F + V + D +G S S S + A V K +LD L +E+ +VG S GG A A + ERV K+V+ G S V + ++ ++ L T + L+K++++ VY + L++ L + R + +K LT D L+ ++ L++WG D+ P+ + +R++ A + H Q E FN +LL+FL Sbjct: 8 TEAATSKYVNVLEGGTELRVHY---NDTGAGKETLVLLHGSGPGASGWANFYRNVDAFANAGYRVILVDCPGWGKSDSIVCTGSRSDLNARVLKGVLDTLGIERAHLVGNSMGGHSAVAFALSY-PERVGKLVLMGGGTG-GPSQFVPMPTEG-IKLLQGLYRDPTLENLKKMLNVFVYDASTMTEELMQTRLDNMLAR-----RDHLENFVKSLTANPKQFPDYGHRLNEIKAPALVIWGRDDRFVPLDVG----------------------------LRLVWGLPNAEFHVFGRCGHWAQWEHAERFNQMLLDFL 286
BLAST of LR48_mrnaVigan04g230500 vs. DB:Swiss
Match: ACOC_PSEPU (Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system OS=Pseudomonas putida OX=303 GN=acoC PE=3 SV=1) HSP 1 Score: 53.9138 bits (128), Expect = 7.507e-7 Identity = 66/277 (23.83%), Postives = 107/277 (38.63%), Query Frame = 1 Query: 157 VVLIHGFGPAAIWQWRQQVQFLAPHFNVYVPDLIFFGGXXXXXXXXXXXFQAASVGKLLDKLKVEKFQVVGTSYGGMVAYNLAKMFGEERVEKVVIASSGVNMKRSNNVALVQRAELEKIEDLMLPATPQQLRKLMSLSVYRTPQFLPHFLLNDFLHKLYSENRKEK-KELLKGLTIGKDESSTLSPL--QQGVLIVWGEQDQIFPVQMARELKEXXXXXXXXXXXXXXXXXXXXHLSVRIISRKARLELIKEASHVPQMEKPREFNNILLNFLQAH 978 +VL+HGFG + W LA V DL G S+ + +V LLD L + K + G S GG V+ N+A + + +IAS+G+ + + ++ + A L+ M + ++ P + +L D L E E ++L + G + L + Q L+VWG +D I P AR+ E A + ++ EA H+ QME + N +L FL+ H Sbjct: 136 LVLVHGFG-GDLNNWLFNHPALAAERRVIALDLPGHGESAKALQRGDLDELSETVLALLDHLDIAKAHLAGHSMGGAVSLNVAGLAPQRVASLSLIASAGLGEAING----------QYLQGFVAAANRNALKPQM-VQLFADPALVTRQMLEDMLKFKRLEGVDEALRQLALAIADGDRQRHDLRSVLGQHPALVVWGGKDAIIPASHARKGPE------------------------------AEVLVLPEAGHMVQMEAAEQVNQQMLAFLRKH 370 The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan04g230500 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1) Total hits: 10
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan04g230500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g230500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g230500; organism=Vigna angularis; type=mRNA; length=1333bpback to top protein sequence of LR48_mrnaVigan04g230500_Va_Jingnong6_v1.1 >LR48_mrnaVigan04g230500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g230500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g230500_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=327bpback to top mRNA from alignment at Chr_4-CM003374.1:32386082..32387414+ Legend: polypeptidestart_codonexonCDSintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>LR48_mrnaVigan04g230500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g230500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g230500; organism=Vigna angularis; type=mRNA; length=1333bp; location=Sequence derived from: Chr_4-CM003374.1:32386082..32387414+ (Vigna angularisback to top Coding sequence (CDS) from alignment at Chr_4-CM003374.1:32386082..32387414+ >LR48_mrnaVigan04g230500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g230500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g230500; organism=Vigna angularis; type=CDS; length=984bp; location=Sequence derived from: Chr_4-CM003374.1:32386082..32387414+ (Vigna angularisback to top |