LR48_mrnaVigan04g233900

Transcript Overview
NameLR48_mrnaVigan04g233900
Unique NameLR48_mrnaVigan04g233900_Va_Jingnong6_v1.1
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length3196
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_4-CM003374.1supercontigChr_4-CM003374.1:32701362..32704557 +Vigna angularis Jingnong 6 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna angularis Jingnong 6 genome v1.12020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.12020-05-21
BLAST: V. angularis Jingnong 6 genome v1.12020-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ascaR547Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR550Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR553Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR577Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR601Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR603Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
asasL207Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asasR211Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asasR215Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasL0072Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0111Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0269Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0368Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0422Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0440Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0840Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaiR654Cicer arietinum ICC 4958 genome v2Cicer arietinum
ascaiR676Cicer arietinum ICC 4958 genome v2Cicer arietinum
ascaiR727Cicer arietinum ICC 4958 genome v2Cicer arietinum
asccR0844Cajanus cajan Asha genome v1.0Cajanus cajan
asccR0907Cajanus cajan Asha genome v1.0Cajanus cajan
asccR0918Cajanus cajan Asha genome v1.0Cajanus cajan
ascrR612Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR614Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR687Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
aspsR537Pisum sativum Cameor genome v1aPisum sativum
aspsR543Pisum sativum Cameor genome v1aPisum sativum
aspsR579Pisum sativum Cameor genome v1aPisum sativum
aspvR592Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR596Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR644Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
asvuR492Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR538Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
astifR573Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR576Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR591Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR594Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR602Vicia faba cv. Tiffany genome v1.0Vicia faba
asvfhR587Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR590Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR605Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR609Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR617Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvrvR467Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR487Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR505Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvssR609Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR641Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR643Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR654Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR666Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR673Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvuaR461Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR488Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR512Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ascanR492Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR496Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR500Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR526Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR543Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
jg20313.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
jg35587.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Ca_09131Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vfaba.Tiffany.R1.4g160640.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vigun09g223200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Ca_01647Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-XM_004507909.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Ca_03169Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
jg55145.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Ca_14908.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Cr_20806.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Ca_15104.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
rna-XM_014645458.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vfaba.Tiffany.R1.3g173360.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Phvul.009G079600.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-TanjilR_07126Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vfaba.Hedin2.R1.3g210320.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Cr_02887.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
rna-TanjilR_09842Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-TanjilR_30282Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-KK1_040232Cajanus cajan Asha genome v1.0Cajanus cajan
rna-KK1_003838Cajanus cajan Asha genome v1.0Cajanus cajan
rna-XM_004501393.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vfaba.Hedin2.R1.2g174360.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Phvul.001G045300.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vfaba.Tiffany.R1.2g140800.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vfaba.Hedin2.R1.4g209520.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
LR48_mrnaVigan07g141800Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LR48_Vigan04g233900gene-LR48_Vigan04g233900_Va_Jingnong6_v1.1Vigna angularisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g233900LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1-proteinVigna angularispolypeptide
LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1Vigna angularispolypeptide


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1-start_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32701362..32701364LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1-start_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32701362..32701364Vigna angularisstart_codon


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32701362..32702225LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32701362..32702225Vigna angularisexon
LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32702305..32702547LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32702305..32702547Vigna angularisexon
LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32702640..32702745LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32702640..32702745Vigna angularisexon
LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32704223..32704557LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32704223..32704557Vigna angularisexon


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1-intron-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32702226..32702304LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1-intron-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32702226..32702304Vigna angularisintron
LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1-intron-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32702548..32702639LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1-intron-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32702548..32702639Vigna angularisintron
LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1-intron-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32702746..32704222LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1-intron-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32702746..32704222Vigna angularisintron


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS2280CDS2280_Va_Jingnong6_v1.1Vigna angularisCDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1-stop_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32704555..32704557LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1-stop_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32704555..32704557Vigna angularisstop_codon


Homology
BLAST of LR48_mrnaVigan04g233900 vs. DB:Swiss
Match: P2C16_ARATH (Protein phosphatase 2C 16 OS=Arabidopsis thaliana OX=3702 GN=HAB1 PE=1 SV=1)

HSP 1 Score: 422.935 bits (1086), Expect = 1.598e-142
Identity = 209/354 (59.04%), Postives = 253/354 (71.47%), Query Frame = 1
Query:  589 TTGVLHQLTLERSVSGTVGRSVFELDCTPLWGFTSVCGKRPEMEDALATVPRFLKIPIQMLTGDRVPDGIDQCFREQTIHFFGVYDGHGGSQVANYCRERMHLALAEEIESVREGLLVESTKDDCRDLWKKAFTSCFLKVDSEVGGDVN----------TDPVAPETVGSTAVVAVICSSHIV-------------------------PNRPDEYARIEAAGGRVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMFVPRAKDDDCLILASDGLWDVMTNEEVCDIARRRILLWHKKNGLPLPSERGEGIDPAAQAAAEYLSNRALQKGSKDNISVIVVDLKAQRKFKSKT 1545
            T+ V+ +L  E S     GRSV+ELDC PLWG  S+ G R EMEDA A  P FLK+PI+ML GD   +G+       T HFFGVYDGHGG +VA+YCR+R+H ALAEEIE +++ L   +T +  +  W K FTSCFL VD E+ G +            + VA ETVGSTAVVA++CSSHIV                         P+R DEYARIE AGG+VIQW G RVFGVLAMSRSIGDRYLKP++IP+PEV F+PR+++D+CLILASDGLWDVM N+EVC+IARRRIL+WHKKNG P  +ERG+GIDPA QAAA+YLS  ALQKGSKDNIS+IV+DLKAQRKFK++T
Sbjct:  160 TSEVVIRLPDENSNHLVKGRSVYELDCIPLWGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDH--EGMSPSLTHLTGHFFGVYDGHGGHKVADYCRDRLHFALAEEIERIKDELCKRNTGEGRQVQWDKVFTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKPDREDEYARIENAGGKVIQWQGARVFGVLAMSRSIGDRYLKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAERGKGIDPACQAAADYLSMLALQKGSKDNISIIVIDLKAQRKFKTRT 511          
BLAST of LR48_mrnaVigan04g233900 vs. DB:Swiss
Match: P2C06_ORYSJ (Probable protein phosphatase 2C 6 OS=Oryza sativa subsp. japonica OX=39947 GN=PP2C06 PE=1 SV=1)

HSP 1 Score: 414.461 bits (1064), Expect = 1.038e-139
Identity = 209/330 (63.33%), Postives = 244/330 (73.94%), Query Frame = 1
Query:  646 RSVFELDCTPLWGFTSVCGKRPEMEDALATVPRFLKIPIQMLTGDRVPDGIDQCFREQTIHFFGVYDGHGGSQVANYCRERMHLALAEEIESVREGLLVESTKD--DCRDLWKKAFTSCFLKVDSEVGGDVNT-DPVAPETVGSTAVVAVICSSHIV-------------------------PNRPDEYARIEAAGGRVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMFVPRAKDDDCLILASDGLWDVMTNEEVCDIARRRILLWHKKNGL-PLPSER-GEGIDPAAQAAAEYLSNRALQKGSKDNISVIVVDLKAQRKFKSKT 1545
            RSVF ++C PLWG  S+CG+RPEMEDA+  V RF  IP+ MLTG+ V DG+D        HFFGVYDGHGG+QVANYCRER+H AL EE+  + EG +  +     + +  W++AF  CF +VD EVGG+ +  + VAPETVGSTAVVAVICSSHI+                         PNR DEYARIEA GG+VIQWNG+RVFGVLAMSRSIGDRYLKPWIIP PE+  VPRAKDD+CL+LASDGLWDVM+NEEVCD+AR+RILLWHKKNG  P  + R G+  DPAA+AAAE LS  ALQKGSKDNISVIVVDLKA RKFKSK+
Sbjct:  139 RSVFAVECVPLWGHKSICGRRPEMEDAVVAVSRFFDIPLWMLTGNSVVDGLDPMSFRLPAHFFGVYDGHGGAQVANYCRERLHAALVEELSRI-EGSVSGANLGSVEFKKKWEQAFVDCFSRVDEEVGGNASRGEAVAPETVGSTAVVAVICSSHIIVANCGDSRAVLCRGKQPVPLSVDHKPNREDEYARIEAEGGKVIQWNGYRVFGVLAMSRSIGDRYLKPWIIPVPEITIVPRAKDDECLVLASDGLWDVMSNEEVCDVARKRILLWHKKNGTNPASAPRSGDSSDPAAEAAAECLSKLALQKGSKDNISVIVVDLKAHRKFKSKS 467          
BLAST of LR48_mrnaVigan04g233900 vs. DB:Swiss
Match: P2C53_ORYSJ (Protein phosphatase 2C 53 OS=Oryza sativa subsp. japonica OX=39947 GN=PP2C53 PE=1 SV=1)

HSP 1 Score: 402.134 bits (1032), Expect = 3.414e-135
Identity = 198/336 (58.93%), Postives = 235/336 (69.94%), Query Frame = 1
Query:  634 GTVGRSVFELDCTPLWGFTSVCGKRPEMEDALATVPRFLKIPIQMLTGDRVPDGIDQCFREQTIHFFGVYDGHGGSQVANYCRERMHLALAEEIESVREGLL-VESTKDDCRDLWKKAFTSCFLKVDSEVGGDVNTD--PVAPETVGSTAVVAVICSSHIV-------------------------PNRPDEYARIEAAGGRVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMFVPRAKDDDCLILASDGLWDVMTNEEVCDIARRRILLWHKKNGLPLPSE----RGEGIDPAAQAAAEYLSNRALQKGSKDNISVIVVDLKAQRKFKSKT 1545
            G   RSVF +DC PLWG  S+CG+RPEMED  A VPRF  +P+ M+ GD   DG+D+       HFF VYDGHGG QVANYCR+R+H  L EE+    +     + +  + + LW+KAF  CF +VD+EVGG+  +   PVAP+TVGSTAVVAV+CSSH++                         PNR DEYARIEA GG+VIQWNG+RV GVLAMSRSIGD+YLKP+IIP PEV  V RAKDDDCLILASDGLWDVM+NEEVCD AR+RILLWHKKN     +      G+  DPAAQAAA+YLS  ALQKGSKDNI+V+V+DLKA RKFKSK 
Sbjct:  110 GATARSVFAMDCVPLWGLESICGRRPEMEDDYAVVPRFFDLPLWMVAGDAAVDGLDRASFRLPAHFFAVYDGHGGVQVANYCRKRIHAVLTEELRRAEDDACGSDLSGLESKKLWEKAFVDCFSRVDAEVGGNAASGAPPVAPDTVGSTAVVAVVCSSHVIVANCGDSRAVLCRGKQPLPLSLDHKPNREDEYARIEALGGKVIQWNGYRVLGVLAMSRSIGDKYLKPYIIPVPEVTVVARAKDDDCLILASDGLWDVMSNEEVCDAARKRILLWHKKNAATASTSSAQISGDSSDPAAQAAADYLSKLALQKGSKDNITVVVIDLKAHRKFKSKA 445          
BLAST of LR48_mrnaVigan04g233900 vs. DB:Swiss
Match: P2C07_ARATH (Protein phosphatase 2C 7 OS=Arabidopsis thaliana OX=3702 GN=HAB2 PE=1 SV=2)

HSP 1 Score: 402.519 bits (1033), Expect = 1.857e-134
Identity = 199/337 (59.05%), Postives = 243/337 (72.11%), Query Frame = 1
Query:  646 RSVFELDCTPLWGFTSVCGKRPEMEDALATVPRFLKIPIQMLTGDRVPDGIDQCFREQTIHFFGVYDGHGGSQVANYCRERMHLALAEEIESVREGLLVESTKDDCRDLWKKAFTSCFLKVDSEVGGDVN-----------TDPVAPETVGSTAVVAVICSSHIV-------------------------PNRPDEYARIEAAGGRVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMFVPRAKDDDCLILASDGLWDVMTNEEVCDIARRRILLWHKKNG-LPLPSERGEGIDPAAQAAAEYLSNRALQKGSKDNISVIVVDLKAQRKFKSKT 1545
            RSV+EL+C PLWG  S+CG R EMEDA+  +P FLKIPI+ML GD   +G+       T HFFGVYDGHGG+QVA+YC +R+H ALAEEIE ++E L   +T +  +  W+K F  C+LKVD EV G +N            + V+PETVGSTAVVA++CSSHI+                         P+R DEYARIE AGG+VIQW G RV GVLAMSRSIGD+YL+P++IPDPEV F+PRA++D+CLILASDGLWDVM+N+E CD ARRRIL WHKKNG LPL +ERG G D A QAAAEYLS  A+Q GSKDNIS+IV+DLKAQRKFK+++
Sbjct:  178 RSVYELECIPLWGTISICGGRSEMEDAVRALPHFLKIPIKMLMGDH--EGMSPSLPYLTSHFFGVYDGHGGAQVADYCHDRIHSALAEEIERIKEELCRRNTGEGRQVQWEKVFVDCYLKVDDEVKGKINRPVVGSSDRMVLEAVSPETVGSTAVVALVCSSHIIVSNCGDSRAVLLRGKDSMPLSVDHKPDREDEYARIEKAGGKVIQWQGARVSGVLAMSRSIGDQYLEPFVIPDPEVTFMPRAREDECLILASDGLWDVMSNQEACDFARRRILAWHKKNGALPL-AERGVGEDQACQAAAEYLSKLAIQMGSKDNISIIVIDLKAQRKFKTRS 511          
BLAST of LR48_mrnaVigan04g233900 vs. DB:Swiss
Match: P2C77_ARATH (Protein phosphatase 2C 77 OS=Arabidopsis thaliana OX=3702 GN=ABI2 PE=1 SV=1)

HSP 1 Score: 383.259 bits (983), Expect = 3.510e-128
Identity = 201/339 (59.29%), Postives = 239/339 (70.50%), Query Frame = 1
Query:  619 ERSVSGTVGRSVFELDCTPLWGFTSVCGKRPEMEDALATVPRFLKIPIQMLTGDRVPDGIDQCFREQTIHFFGVYDGHGGSQVANYCRERMHLALAEEIESVREGLLVESTKDDCRDLWKKAFTSCFLKVDSEVGGDVNTDPVAPETVGSTAVVAVICSSHIV-------------------------PNRPDEYARIEAAGGRVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMFVPRAKDDDCLILASDGLWDVMTNEEVCDIARRRILLWHKKNGLP----LPSE-RGEGIDPAAQAAAEYLSNRALQKGSKDNISVIVVDLKAQRKFKSKT 1545
            ++ +S T  RS+FE  C PL+G TS+CG+RPEMED+++T+PRFL++    L   RV +G +      + HFFGVYDGHGGSQVANYCRERMHLAL EEI   +         D  ++ WKKA  + F++VDSE+     T   APETVGST+VVAV+  +HI                          P+R DE ARIEAAGG+VI+WNG RVFGVLAMSRSIGDRYLKP +IPDPEV  V R K+DDCLILASDGLWDVMTNEEVCD+AR+RILLWHKKN +     LP+E RGEG DPAA +AAEYLS  ALQKGSKDNISV+VVDLK  RKFKSK+
Sbjct:   93 KKVLSRTESRSLFEFKCVPLYGVTSICGRRPEMEDSVSTIPRFLQVSSSSLLDGRVTNGFNPHL---SAHFFGVYDGHGGSQVANYCRERMHLALTEEIVKEKPEFC---DGDTWQEKWKKALFNSFMRVDSEI----ETVAHAPETVGSTSVVAVVFPTHIFVANCGDSRAVLCRGKTPLALSVDHKPDRDDEAARIEAAGGKVIRWNGARVFGVLAMSRSIGDRYLKPSVIPDPEVTSVRRVKEDDCLILASDGLWDVMTNEEVCDLARKRILLWHKKNAMAGEALLPAEKRGEGKDPAAMSAAEYLSKMALQKGSKDNISVVVVDLKGIRKFKSKS 421          
BLAST of LR48_mrnaVigan04g233900 vs. DB:Swiss
Match: P2C56_ARATH (Protein phosphatase 2C 56 OS=Arabidopsis thaliana OX=3702 GN=ABI1 PE=1 SV=2)

HSP 1 Score: 369.392 bits (947), Expect = 1.420e-122
Identity = 198/340 (58.24%), Postives = 231/340 (67.94%), Query Frame = 1
Query:  619 ERSVSGTVGRSVFELDCTPLWGFTSVCGKRPEMEDALATVPRFLKIPI-QMLTGDRVPDGIDQCFREQTIHFFGVYDGHGGSQVANYCRERMHLALAEEIESVREGLLVESTKDDCRDLWKKAFTSCFLKVDSEVGGDVNTDPVAPETVGSTAVVAVICSSHIV-------------------------PNRPDEYARIEAAGGRVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMFVPRAKDDDCLILASDGLWDVMTNEEVCDIARRRILLWHKKNG------LPLPSERGEGIDPAAQAAAEYLSNRALQKGSKDNISVIVVDLKAQRKFKSK 1542
            ++ +S T  RS+FE    PL+GFTS+CG+RPEMEDA++T+PRFL+     ML G   P        +   HFFGVYDGHGGSQVANYCRERMHLALAEEI   +  L      D   + WKKA  + FL+VDSE+      + VAPETVGST+VVAV+  SHI                          P+R DE ARIEAAGG+VIQWNG RVFGVLAMSRSIGDRYLKP IIPDPEV  V R K+DDCLILASDG+WDVMT+EE C++AR+RILLWHKKN       L     R EG DPAA +AAEYLS  A+Q+GSKDNISV+VVDLK +RK KSK
Sbjct:  109 KKMISRTESRSLFEFKSVPLYGFTSICGRRPEMEDAVSTIPRFLQSSSGSMLDGRFDP--------QSAAHFFGVYDGHGGSQVANYCRERMHLALAEEIAKEKPMLC---DGDTWLEKWKKALFNSFLRVDSEI------ESVAPETVGSTSVVAVVFPSHIFVANCGDSRAVLCRGKTALPLSVDHKPDREDEAARIEAAGGKVIQWNGARVFGVLAMSRSIGDRYLKPSIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEACEMARKRILLWHKKNAVAGDASLLADERRKEGKDPAAMSAAEYLSKLAIQRGSKDNISVVVVDLKPRRKLKSK 431          
BLAST of LR48_mrnaVigan04g233900 vs. DB:Swiss
Match: P2C50_ORYSJ (Protein phosphatase 2C 50 OS=Oryza sativa subsp. japonica OX=39947 GN=PP2C50 PE=1 SV=1)

HSP 1 Score: 359.377 bits (921), Expect = 2.021e-119
Identity = 186/344 (54.07%), Postives = 235/344 (68.31%), Query Frame = 1
Query:  625 SVSGTVGRSVFELDCTPLWGFTSVCGKRPEMEDALATVPRFLKIPIQMLTGDRVPD--GIDQCFREQTIHFFGVYDGHGGSQVANYCRERMHLALAEEIESVREGLLVESTKDDCRDLWKKAFTSCFLKVDSEV----------GGDVNTDPVAPETVGSTAVVAVICSSHIV-------------------------PNRPDEYARIEAAGGRVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMFVPRAKDDDCLILASDGLWDVMTNEEVCDIARRRILLWHKKNGLPLP-SERGEG-IDPAAQAAAEYLSNRALQKGSKDNISVIVVDLKAQRKFKS 1539
            + +G   RSV+ +DC P+WG  S  G+  EMEDA A VPRF  +P+++L   R  D  G+D        H FGV+DGHGG++VANYCRER+H+ L+EE++ + + L  E  + D ++ W   FT CF +VD EV          GG+V ++PV  E VGSTAVVA++CSSH+V                         P+R DE ARIEA GG+VIQWNG+RV G+LAMSRSIGDRYLKP++IP PEVM VPRAKDDDCLILASDGLWDV++NEE C +ARR+ILLWHK NG   P S+ GEG  DPAAQAAA+YL   AL+KGS+DNI+VIVVDLK ++K K+
Sbjct:   43 AAAGAGKRSVYLMDCAPVWGCASTRGRSAEMEDASAAVPRFADVPVRLLASRRDLDALGLDADALRLPAHLFGVFDGHGGAEVANYCRERIHVVLSEELKRLGKNL-GEMGEVDMKEHWDDVFTKCFQRVDDEVSGRVTRVVNGGGEVRSEPVTAENVGSTAVVALVCSSHVVVANCGDSRIVLCRGKEPVALSIDHKPDRKDERARIEAQGGKVIQWNGYRVSGILAMSRSIGDRYLKPFVIPKPEVMVVPRAKDDDCLILASDGLWDVVSNEEACKVARRQILLWHKNNGAASPLSDEGEGSTDPAAQAAADYLMRLALKKGSEDNITVIVVDLKPRKKLKN 385          
BLAST of LR48_mrnaVigan04g233900 vs. DB:Swiss
Match: P2C08_ORYSJ (Probable protein phosphatase 2C 8 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0656200 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 7.636e-67
Identity = 140/320 (43.75%), Postives = 182/320 (56.88%), Query Frame = 1
Query:  682 GFTSVCGKRPEMEDALATVPRFLKIPIQMLTGDRVPDG---IDQCFREQTIHFFGVYDGHGGSQVANYCRERMHLALAEEIESVR---EGLLVESTKDDCRDLWKKAFTSCFLKVDSEVGGDVNTDPVAPETVGSTAVVAVICSSHIV-------------------------PNRPDEYARIEAAGGRVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMFVPRAKDDDCLILASDGLWDVMTNEEVCDIARRRILLWHKKNGLPLPSERGEGIDPAAQA-AAEYLSNRALQKGSKDNISVIVVDLKAQRKFKSKT 1545
            G  SV G+R EMEDA+     F+  P    + +   +G    ++  +E+   FF VYDGHGGS+VA  CRERMH+ LAEE+   R    G      +D+ R  WK+A  +CF +VD EVGG    D    +TVGSTAVVAV+    IV                         P+RPDE  R+EAAGGRVI WNG+R+ GVLA SRSIGD YLKP++I +PEV  + R   D+ LILASDGLWDV++N+  C IA R  L     +  P      E +  +  A AA  L   A+ +GSKDNISV+VV+L   R+ +S+T
Sbjct:   92 GAVSVIGRRREMEDAI-----FVAAPFLAASKEAAVEGSGVAEEEGKEEDEGFFAVYDGHGGSRVAEACRERMHVVLAEEVRVRRLLQGGGGGADVEDEDRARWKEAMAACFTRVDGEVGGAEEAD-TGEQTVGSTAVVAVVGPRRIVVANCGDSRAVLSRGGVAVPLSSDHKPDRPDEMERVEAAGGRVINWNGYRILGVLATSRSIGDYYLKPYVIAEPEVTVMDRTDKDEFLILASDGLWDVVSNDVACKIA-RNCLSGRAASKYP------ESVSGSTAADAAALLVELAISRGSKDNISVVVVEL---RRLRSRT 395          
BLAST of LR48_mrnaVigan04g233900 vs. DB:Swiss
Match: P2C09_ORYSJ (Probable protein phosphatase 2C 9 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0846300 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 2.557e-61
Identity = 131/346 (37.86%), Postives = 171/346 (49.42%), Query Frame = 1
Query:  673 PLWGFTSVCGKRPEMEDALATVPRFLKIPIQMLTGDRVPDGIDQCFREQTIHFFGVYDGHGGSQVANYCRERMHLALAEEIESVREGLLVESTKDDCRDLWKKAFTSCFLKVDSEVGGDVNT----DPVAP---------ETVGSTAVVAVICSSHIV-------------------------PNRPDEYARIEAAGGRVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMFVPRAKDDDCLILASDGLWDVMTNEEVCDIARRRILLWHKKNGLPLPSERGEGIDPAAQA--------------------------AAEYLSNRALQKGSKDNISVIVVDLK 1518
            P +G T+VCG+R EMEDA++  P FL                         HF+GV+DGHG S VA  C++RMH  +AEE      G +           W+      F ++D EVG   +T    +P  P         +  GSTAVVAV+  + +V                         P+RPDE  RIEAAGGRVI W+G RV GVLAMSR+IGD YLKP++  +PEV    R  DD+CLILASDGLWDV+TNE  C++ R     +H  NG P P+ R  G+  +A+A                          AA  L+  AL + S DN+SV+VVDL+
Sbjct:   98 PRYGVTAVCGRRREMEDAVSIRPDFLPA-------------------SGKFHFYGVFDGHGCSHVATTCQDRMHEIVAEEHNKGASGEVAP---------WRDVMEKSFARMDGEVGNRASTRSDDEPACPCEQQTPSRRDHAGSTAVVAVVSPTQVVVANAGDSRAVISRAGVPVALSVDHKPDRPDELERIEAAGGRVIYWDGARVLGVLAMSRAIGDGYLKPYVTSEPEVTVTERTDDDECLILASDGLWDVVTNEMACEVVR---ACFH-NNGPPAPAARPSGVPSSAEAAETENGGAASVKGISKAESSDKACSDAAMLLTKLALARRSADNVSVVVVDLR 411          
BLAST of LR48_mrnaVigan04g233900 vs. DB:Swiss
Match: P2C51_ORYSJ (Protein phosphatase 2C 51 OS=Oryza sativa subsp. japonica OX=39947 GN=PP2C51 PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 4.090e-59
Identity = 141/321 (43.93%), Postives = 177/321 (55.14%), Query Frame = 1
Query:  682 GFTSVCGKRPEMEDALATVPRFLKIPIQMLTGDRVPDGIDQCFREQTIHFFGVYDGHGGSQVANYCRERMHLALAEEIESVREGLLVESTKDDCRDLWKKAFTSCFLKVDSEVGGDV--------NTDPVAPETVGSTAVVAVICSSHIV-------------------------PNRPDEYARIEAAGGRVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMFVPRAKDDDCLILASDGLWDVMTNEEVCDIARRRILLWHKKNGLPLPSERGEGIDPAAQAAAEYLSNRALQKGSKDNISVIVVDLKAQRKFKSKT 1545
            G  SV G+R EMEDA+A    F+       TGD    G  +   E    FF VYDGHGGS+VA  CR+RMH+ LAEE+ S+R      ++  D R  WK+A  + F ++D EV G V         T+P    TVGSTAVVAV+    IV                         P+RPDE  R+EAAGGRVI WNG+RV GVLA SRSIGD YLKP++  +PEV  V R   D+ LILASDGLWDV++NE  C IAR  +      NG             +A  AA  L+  A+ +GS+DNISV+VV+L   R+ KS+ 
Sbjct:   79 GSVSVIGRRREMEDAVAIERTFM-----ASTGD--GAGAIRGGGEGEEDFFAVYDGHGGSRVAEACRKRMHVVLAEEV-SLRRLRGQSASGGDVR--WKEAMLASFARMDGEVVGSVAAAAPRVDGTEPSGFRTVGSTAVVAVVGRRRIVVANCGDSRAVLSRGGVALPLSTDHKPDRPDELERVEAAGGRVINWNGYRVLGVLATSRSIGDYYLKPFVSAEPEVRVVERTDKDEFLILASDGLWDVVSNEVACKIARNCL------NGRAASMFPESVSGSSAADAAALLAELAVSRGSRDNISVVVVEL---RRLKSRA 380          
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan04g233900 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 10
Match NameE-valueIdentityDescription
P2C16_ARATH1.598e-14259.04Protein phosphatase 2C 16 OS=Arabidopsis thaliana ... [more]
P2C06_ORYSJ1.038e-13963.33Probable protein phosphatase 2C 6 OS=Oryza sativa ... [more]
P2C53_ORYSJ3.414e-13558.93Protein phosphatase 2C 53 OS=Oryza sativa subsp. j... [more]
P2C07_ARATH1.857e-13459.05Protein phosphatase 2C 7 OS=Arabidopsis thaliana O... [more]
P2C77_ARATH3.510e-12859.29Protein phosphatase 2C 77 OS=Arabidopsis thaliana ... [more]
P2C56_ARATH1.420e-12258.24Protein phosphatase 2C 56 OS=Arabidopsis thaliana ... [more]
P2C50_ORYSJ2.021e-11954.07Protein phosphatase 2C 50 OS=Oryza sativa subsp. j... [more]
P2C08_ORYSJ7.636e-6743.75Probable protein phosphatase 2C 8 OS=Oryza sativa ... [more]
P2C09_ORYSJ2.557e-6137.86Probable protein phosphatase 2C 9 OS=Oryza sativa ... [more]
P2C51_ORYSJ4.090e-5943.93Protein phosphatase 2C 51 OS=Oryza sativa subsp. j... [more]
back to top
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001932PPM-type phosphatase domainSMARTSM00332PP2C_4coord: 216..503
e-value: 2.3E-65
score: 233.1
IPR001932PPM-type phosphatase domainPFAMPF00481PP2Ccoord: 370..498
e-value: 5.6E-33
score: 114.6
coord: 256..368
e-value: 1.4E-10
score: 41.1
IPR001932PPM-type phosphatase domainPROSITEPS51746PPM_2coord: 226..505
score: 37.541
IPR001932PPM-type phosphatase domainCDDcd00143PP2Cccoord: 228..505
e-value: 9.87623E-69
score: 219.12
IPR036457PPM-type phosphatase domain superfamilyGENE3D3.60.40.10coord: 368..515
e-value: 2.7E-53
score: 183.3
coord: 213..367
e-value: 2.9E-34
score: 120.7
IPR036457PPM-type phosphatase domain superfamilySUPERFAMILY81606PP2C-likecoord: 222..506
IPR000222PPM-type phosphatase, divalent cation bindingPROSITEPS01032PPM_1coord: 277..285

Sequences
The following sequences are available for this feature:

mRNA sequence

>LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g233900; organism=Vigna angularis; type=mRNA; length=3196bp
ATGTCAACCACGGTTGCAGTGCCATTGAGAGTAGGTAATTCAGTGTGTGA
TAAGCCAACCATTACTACCCACATGGATGTGTCCAGAATTAAGCTGATGA
CAGAGGCAGGGTTGTTATCCAATTCTATAACCAAGGTTTCTACTGATACT
TTTATTGCTGATGAGGATATGGACAGTAATTGTCTTGGGGAGGAAGTTGG
TAGTGCAGCAGTCACACCTCCAGAAAAGGGAAGAGTAGAAGAAATTCCGA
TGTTGGGTATGGTGTCCCAAAATATAAACTCTTTGGTTGTCGGTGAAGAA
GTTTTAACCCCAGAAATTGAGGATGATGATTTGATATCGCTAGAAGGTGA
TCCAATTATTGATAGTTCTCTTTCAGTAGCCAGCGAGAATAGTAGTTTTT
GTGGAGATGAGTTCATCGGTTCTGAGATTTCTGCAGATTTAGGGACAAGA
AGTTCCATAGAAATAGAGAAAAGCATCAACACTGTGAAAATTGCTGCCAG
GGCTACTGATTTGGGTGTGTCAAATGTAGTCGCAGATGTAGCAGTTAGCG
TTGGAGAAGAGACAGGAGTTATATCTGTCCCAGAGCCTACTACAGGTGTT
CTTCATCAACTAACTCTAGAAAGATCTGTGAGTGGAACAGTTGGTAGAAG
TGTTTTTGAATTAGATTGTACCCCACTTTGGGGATTTACATCTGTGTGTG
GAAAAAGACCTGAGATGGAAGATGCTCTTGCAACTGTACCtagatttttg
aaaattccTATTCAAATGCTAACCGGTGATAGGGTACCTGATGGCATAGA
CCAATGTTTCAGGGAGCAGACAATACATTTCTTTGGAGTCTATGATGGCC
ATGGTGGTTCTCAGGTAAagttttattttgctttttacGTGTTCTAATGT
CCAACCATTGAGCATTCTTCACACGTAGCTTGTTTACTTTTAGGTGGCAA
ATTATTGCCGCGAGCGCATGCATTTAGCCTTGGCAGAGGAAATAGAATCT
GTCAGAGAAGGTCTTTTAGTTGAAAGCACCAAGGATGATTGTCGAGATCT
GTGGAAAAAAGCCTTCACCAGTTGCTTTTTAAAGGTTGATTCTGAAGTTG
GAGGGGATGTTAATACTGATCCTGTTGCCCCAGAAACTGTTGGATCAACT
GCTGTTGTTGCTGTTATATGTTCATCTCATATTGTAGTTTCAAACTGTGG
TGATTCAATTGTAGTTGTCTCCTTTCGAAAGAATTTTAACTAAATAGAAg
aaatttatgtttgattgttGTATGATAGCCAAATCGACCTGATGAATATG
CAAGAATTGAGGCAGCTGGAGGCAGGGTGATACAATGGAATGGTCACCGA
GTTTTTGGTGTTCTCGCAATGTCAAGGTCAATTGGTATGAGCTTAATCag
aagtttaattttatttcctgTGGTGTAATGATTTTGGTTACTTGGTGGTT
TTTTTGGTGAGCATGGCTGACAAGGAATTTTTCTCAATGCACATATCGGT
AACTTAGTGTGTGAATGGAAAAAGGAACATTGGTTGCATTCTTCATATCC
GCACTCTTATCTCTGATAGAAATGGTGTTATTACGAAGATGGTGTAGTCT
TTTCATTTCCTTATGATGCTGATCACATGAGTAATGTTATGTTTTCCTAC
TAATCCTTactaattttctataaaataagtattaattaaaaaggtAAATA
CATTTCATACCTTAGAAATGTAAAATGCATTCAATTCTTTCTGCATTTAG
TAATTCAGAAGATATTATTGGAGGATTTAGTGGTCTTCTTTTTCACAGGA
CTAAAAGTCCTGCAATTTACCCTCCTCGCTGGTGCATATAGTAACCTTTG
TACGATTTCCAACTGTCTTAACCGATTTTCTGTCATCTTTTTGTGTACAA
TTATTTTGTATTACGGCTTTTCTTGTGTGGTCAGAGAGATTCATATTACC
CCTCGCATATCTgttctcaccttttctctcaTGGGTCCTTTAAAGTCGAA
CATTCaatacataataattattatactttCCTCTAAGCTTGATAGACATT
AAAATCACAAACCTTCGATATCCTTTTTCATTCAGCTATGTTTTTATCTT
CTATAACATCATTAATTTTCTCATCATTACTTCTGAGTCATGTTCCCAGT
CCTTGCTAAAGTTGTAACGTACTCTCATTCTTATAAAGTGAAAATACTAT
TTTCGTCTCTGAAACTCAAGTTTAAAGTTAAATGCTTACTTATTCTTTTT
AAAGTTGTTAGGCACGTACTCTCACTTATTCTTGTAACTGTGTAATTcct
taattaaaagtttttcttaTGCAAAAAGCATGCAATTAGGGATAACGTTT
TGTGTCTTTGTTTTTACtttagaataaatttataatttatagttCTAAGC
TTAAGATTTGAGTTACAATGAATGTACACAACTCTTATGCCAAGAATATA
TTTCAACATTCAACGATCCACCCTATAAAGTTTAGCAGACTTTGTTTGGA
CAAGTTATATTACAGGGGAAACGACGCCGAGAAAGGTTTTGTTGAAAAGA
AAGGGAATGTGAAGGGAACTGTCCTCAAGCTGAGCCTTTTTTTGCCCCCA
GATTTGTGTACttctaaaaaaattgtttattcataaatttactTGGCAAG
TTTCATATGGGGTAATATGAAAATGGTTACTATGGACACTAAATATGGTT
AtgctttgttttcatttttttgtcttGGTTGCATTCTTTGTGCGTGTAGG
TTTGATAATCTGTTGTGGCTGTAGTGTGTACTTGTGCAGTGAAGTTGCAT
GTCCTTGAAAAGTTTTTGTCGAAAGCTGTTTTTGTTTACTGTTGGCTTGA
TAATTATACAGGTGATAGGTATTTGAAGCCATGGATTATTCCAGACCCTG
AGGTGATGTTTGTTCCTCGTGCCAAAGACGATGACTGCCTCATTCTGGCC
AGTGACGGCCTGTGGGATGTCATGACAAACGAAGAGGTGTGCGACATTGC
TCGGCGGCGCATACTTCTCTGGCACAAGAAAAATGGGCTGCCACTGCCCT
CAGAACGGGGAGAAGGAATTGATCCAGCTGCACAAGCAGCTGCAGAGTAC
CTCTCAAATCGCGCCCTTCAGAAAGGAAGCAAAGACAACATCTCTGTGAT
TGTGGTGGATTTGAAAGCTCAGAGAAAATTTAAGAGCAAGACGTGA
back to top

protein sequence of LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1

>LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=515bp
MSTTVAVPLRVGNSVCDKPTITTHMDVSRIKLMTEAGLLSNSITKVSTDT
FIADEDMDSNCLGEEVGSAAVTPPEKGRVEEIPMLGMVSQNINSLVVGEE
VLTPEIEDDDLISLEGDPIIDSSLSVASENSSFCGDEFIGSEISADLGTR
SSIEIEKSINTVKIAARATDLGVSNVVADVAVSVGEETGVISVPEPTTGV
LHQLTLERSVSGTVGRSVFELDCTPLWGFTSVCGKRPEMEDALATVPRFL
KIPIQMLTGDRVPDGIDQCFREQTIHFFGVYDGHGGSQVANYCRERMHLA
LAEEIESVREGLLVESTKDDCRDLWKKAFTSCFLKVDSEVGGDVNTDPVA
PETVGSTAVVAVICSSHIVPNRPDEYARIEAAGGRVIQWNGHRVFGVLAM
SRSIGDRYLKPWIIPDPEVMFVPRAKDDDCLILASDGLWDVMTNEEVCDI
ARRRILLWHKKNGLPLPSERGEGIDPAAQAAAEYLSNRALQKGSKDNISV
IVVDLKAQRKFKSKT
back to top

mRNA from alignment at Chr_4-CM003374.1:32701362..32704557+

Legend: polypeptidestart_codonexonCDSintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g233900; organism=Vigna angularis; type=mRNA; length=3196bp; location=Sequence derived from: Chr_4-CM003374.1:32701362..32704557+ (Vigna angularis
ATGTCAACCACGGTTGCAGTGCCATTGAGAGTAGGTAATTCAGTGTGTGA TAAGCCAACCATTACTACCCACATGGATGTGTCCAGAATTAAGCTGATGA CAGAGGCAGGGTTGTTATCCAATTCTATAACCAAGGTTTCTACTGATACT TTTATTGCTGATGAGGATATGGACAGTAATTGTCTTGGGGAGGAAGTTGG TAGTGCAGCAGTCACACCTCCAGAAAAGGGAAGAGTAGAAGAAATTCCGA TGTTGGGTATGGTGTCCCAAAATATAAACTCTTTGGTTGTCGGTGAAGAA GTTTTAACCCCAGAAATTGAGGATGATGATTTGATATCGCTAGAAGGTGA TCCAATTATTGATAGTTCTCTTTCAGTAGCCAGCGAGAATAGTAGTTTTT GTGGAGATGAGTTCATCGGTTCTGAGATTTCTGCAGATTTAGGGACAAGA AGTTCCATAGAAATAGAGAAAAGCATCAACACTGTGAAAATTGCTGCCAG GGCTACTGATTTGGGTGTGTCAAATGTAGTCGCAGATGTAGCAGTTAGCG TTGGAGAAGAGACAGGAGTTATATCTGTCCCAGAGCCTACTACAGGTGTT CTTCATCAACTAACTCTAGAAAGATCTGTGAGTGGAACAGTTGGTAGAAG TGTTTTTGAATTAGATTGTACCCCACTTTGGGGATTTACATCTGTGTGTG GAAAAAGACCTGAGATGGAAGATGCTCTTGCAACTGTACCtagatttttg aaaattccTATTCAAATGCTAACCGGTGATAGGGTACCTGATGGCATAGA CCAATGTTTCAGGGAGCAGACAATACATTTCTTTGGAGTCTATGATGGCC ATGGTGGTTCTCAGGTAAagttttattttgctttttacGTGTTCTAATGT CCAACCATTGAGCATTCTTCACACGTAGCTTGTTTACTTTTAGGTGGCAA ATTATTGCCGCGAGCGCATGCATTTAGCCTTGGCAGAGGAAATAGAATCT GTCAGAGAAGGTCTTTTAGTTGAAAGCACCAAGGATGATTGTCGAGATCT GTGGAAAAAAGCCTTCACCAGTTGCTTTTTAAAGGTTGATTCTGAAGTTG GAGGGGATGTTAATACTGATCCTGTTGCCCCAGAAACTGTTGGATCAACT GCTGTTGTTGCTGTTATATGTTCATCTCATATTGTAGTTTCAAACTGTGG TGATTCAATTGTAGTTGTCTCCTTTCGAAAGAATTTTAACTAAATAGAAg aaatttatgtttgattgttGTATGATAGCCAAATCGACCTGATGAATATG CAAGAATTGAGGCAGCTGGAGGCAGGGTGATACAATGGAATGGTCACCGA GTTTTTGGTGTTCTCGCAATGTCAAGGTCAATTGGTATGAGCTTAATCag aagtttaattttatttcctgTGGTGTAATGATTTTGGTTACTTGGTGGTT TTTTTGGTGAGCATGGCTGACAAGGAATTTTTCTCAATGCACATATCGGT AACTTAGTGTGTGAATGGAAAAAGGAACATTGGTTGCATTCTTCATATCC GCACTCTTATCTCTGATAGAAATGGTGTTATTACGAAGATGGTGTAGTCT TTTCATTTCCTTATGATGCTGATCACATGAGTAATGTTATGTTTTCCTAC TAATCCTTactaattttctataaaataagtattaattaaaaaggtAAATA CATTTCATACCTTAGAAATGTAAAATGCATTCAATTCTTTCTGCATTTAG TAATTCAGAAGATATTATTGGAGGATTTAGTGGTCTTCTTTTTCACAGGA CTAAAAGTCCTGCAATTTACCCTCCTCGCTGGTGCATATAGTAACCTTTG TACGATTTCCAACTGTCTTAACCGATTTTCTGTCATCTTTTTGTGTACAA TTATTTTGTATTACGGCTTTTCTTGTGTGGTCAGAGAGATTCATATTACC CCTCGCATATCTgttctcaccttttctctcaTGGGTCCTTTAAAGTCGAA CATTCaatacataataattattatactttCCTCTAAGCTTGATAGACATT AAAATCACAAACCTTCGATATCCTTTTTCATTCAGCTATGTTTTTATCTT CTATAACATCATTAATTTTCTCATCATTACTTCTGAGTCATGTTCCCAGT CCTTGCTAAAGTTGTAACGTACTCTCATTCTTATAAAGTGAAAATACTAT TTTCGTCTCTGAAACTCAAGTTTAAAGTTAAATGCTTACTTATTCTTTTT AAAGTTGTTAGGCACGTACTCTCACTTATTCTTGTAACTGTGTAATTcct taattaaaagtttttcttaTGCAAAAAGCATGCAATTAGGGATAACGTTT TGTGTCTTTGTTTTTACtttagaataaatttataatttatagttCTAAGC TTAAGATTTGAGTTACAATGAATGTACACAACTCTTATGCCAAGAATATA TTTCAACATTCAACGATCCACCCTATAAAGTTTAGCAGACTTTGTTTGGA CAAGTTATATTACAGGGGAAACGACGCCGAGAAAGGTTTTGTTGAAAAGA AAGGGAATGTGAAGGGAACTGTCCTCAAGCTGAGCCTTTTTTTGCCCCCA GATTTGTGTACttctaaaaaaattgtttattcataaatttactTGGCAAG TTTCATATGGGGTAATATGAAAATGGTTACTATGGACACTAAATATGGTT AtgctttgttttcatttttttgtcttGGTTGCATTCTTTGTGCGTGTAGG TTTGATAATCTGTTGTGGCTGTAGTGTGTACTTGTGCAGTGAAGTTGCAT GTCCTTGAAAAGTTTTTGTCGAAAGCTGTTTTTGTTTACTGTTGGCTTGA TAATTATACAGGTGATAGGTATTTGAAGCCATGGATTATTCCAGACCCTG AGGTGATGTTTGTTCCTCGTGCCAAAGACGATGACTGCCTCATTCTGGCC AGTGACGGCCTGTGGGATGTCATGACAAACGAAGAGGTGTGCGACATTGC TCGGCGGCGCATACTTCTCTGGCACAAGAAAAATGGGCTGCCACTGCCCT CAGAACGGGGAGAAGGAATTGATCCAGCTGCACAAGCAGCTGCAGAGTAC CTCTCAAATCGCGCCCTTCAGAAAGGAAGCAAAGACAACATCTCTGTGAT TGTGGTGGATTTGAAAGCTCAGAGAAAATTTAAGAGCAAGACGTGA
back to top

Coding sequence (CDS) from alignment at Chr_4-CM003374.1:32701362..32704557+

>LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g233900; organism=Vigna angularis; type=CDS; length=1548bp; location=Sequence derived from: Chr_4-CM003374.1:32701362..32704557+ (Vigna angularis
ATGTCAACCACGGTTGCAGTGCCATTGAGAGTAGGTAATTCAGTGTGTGA
TAAGCCAACCATTACTACCCACATGGATGTGTCCAGAATTAAGCTGATGA
CAGAGGCAGGGTTGTTATCCAATTCTATAACCAAGGTTTCTACTGATACT
TTTATTGCTGATGAGGATATGGACAGTAATTGTCTTGGGGAGGAAGTTGG
TAGTGCAGCAGTCACACCTCCAGAAAAGGGAAGAGTAGAAGAAATTCCGA
TGTTGGGTATGGTGTCCCAAAATATAAACTCTTTGGTTGTCGGTGAAGAA
GTTTTAACCCCAGAAATTGAGGATGATGATTTGATATCGCTAGAAGGTGA
TCCAATTATTGATAGTTCTCTTTCAGTAGCCAGCGAGAATAGTAGTTTTT
GTGGAGATGAGTTCATCGGTTCTGAGATTTCTGCAGATTTAGGGACAAGA
AGTTCCATAGAAATAGAGAAAAGCATCAACACTGTGAAAATTGCTGCCAG
GGCTACTGATTTGGGTGTGTCAAATGTAGTCGCAGATGTAGCAGTTAGCG
TTGGAGAAGAGACAGGAGTTATATCTGTCCCAGAGCCTACTACAGGTGTT
CTTCATCAACTAACTCTAGAAAGATCTGTGAGTGGAACAGTTGGTAGAAG
TGTTTTTGAATTAGATTGTACCCCACTTTGGGGATTTACATCTGTGTGTG
GAAAAAGACCTGAGATGGAAGATGCTCTTGCAACTGTACCtagatttttg
aaaattccTATTCAAATGCTAACCGGTGATAGGGTACCTGATGGCATAGA
CCAATGTTTCAGGGAGCAGACAATACATTTCTTTGGAGTCTATGATGGCC
ATGGTGGTTCTCAGGTGGCAAATTATTGCCGCGAGCGCATGCATTTAGCC
TTGGCAGAGGAAATAGAATCTGTCAGAGAAGGTCTTTTAGTTGAAAGCAC
CAAGGATGATTGTCGAGATCTGTGGAAAAAAGCCTTCACCAGTTGCTTTT
TAAAGGTTGATTCTGAAGTTGGAGGGGATGTTAATACTGATCCTGTTGCC
CCAGAAACTGTTGGATCAACTGCTGTTGTTGCTGTTATATGTTCATCTCA
TATTGTACCAAATCGACCTGATGAATATGCAAGAATTGAGGCAGCTGGAG
GCAGGGTGATACAATGGAATGGTCACCGAGTTTTTGGTGTTCTCGCAATG
TCAAGGTCAATTGGTGATAGGTATTTGAAGCCATGGATTATTCCAGACCC
TGAGGTGATGTTTGTTCCTCGTGCCAAAGACGATGACTGCCTCATTCTGG
CCAGTGACGGCCTGTGGGATGTCATGACAAACGAAGAGGTGTGCGACATT
GCTCGGCGGCGCATACTTCTCTGGCACAAGAAAAATGGGCTGCCACTGCC
CTCAGAACGGGGAGAAGGAATTGATCCAGCTGCACAAGCAGCTGCAGAGT
ACCTCTCAAATCGCGCCCTTCAGAAAGGAAGCAAAGACAACATCTCTGTG
ATTGTGGTGGATTTGAAAGCTCAGAGAAAATTTAAGAGCAAGACGTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001932PPM-type_phosphatase-like_dom
IPR036457PPM-type-like_dom_sf
IPR000222PP2C_BS
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0043169cation binding