LR48_mrnaVigan04g233900
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Homology
BLAST of LR48_mrnaVigan04g233900 vs. DB:Swiss
Match: P2C16_ARATH (Protein phosphatase 2C 16 OS=Arabidopsis thaliana OX=3702 GN=HAB1 PE=1 SV=1) HSP 1 Score: 422.935 bits (1086), Expect = 1.598e-142 Identity = 209/354 (59.04%), Postives = 253/354 (71.47%), Query Frame = 1 Query: 589 TTGVLHQLTLERSVSGTVGRSVFELDCTPLWGFTSVCGKRPEMEDALATVPRFLKIPIQMLTGDRVPDGIDQCFREQTIHFFGVYDGHGGSQVANYCRERMHLALAEEIESVREGLLVESTKDDCRDLWKKAFTSCFLKVDSEVGGDVN----------TDPVAPETVGSTAVVAVICSSHIV-------------------------PNRPDEYARIEAAGGRVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMFVPRAKDDDCLILASDGLWDVMTNEEVCDIARRRILLWHKKNGLPLPSERGEGIDPAAQAAAEYLSNRALQKGSKDNISVIVVDLKAQRKFKSKT 1545 T+ V+ +L E S GRSV+ELDC PLWG S+ G R EMEDA A P FLK+PI+ML GD +G+ T HFFGVYDGHGG +VA+YCR+R+H ALAEEIE +++ L +T + + W K FTSCFL VD E+ G + + VA ETVGSTAVVA++CSSHIV P+R DEYARIE AGG+VIQW G RVFGVLAMSRSIGDRYLKP++IP+PEV F+PR+++D+CLILASDGLWDVM N+EVC+IARRRIL+WHKKNG P +ERG+GIDPA QAAA+YLS ALQKGSKDNIS+IV+DLKAQRKFK++T Sbjct: 160 TSEVVIRLPDENSNHLVKGRSVYELDCIPLWGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDH--EGMSPSLTHLTGHFFGVYDGHGGHKVADYCRDRLHFALAEEIERIKDELCKRNTGEGRQVQWDKVFTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKPDREDEYARIENAGGKVIQWQGARVFGVLAMSRSIGDRYLKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAERGKGIDPACQAAADYLSMLALQKGSKDNISIIVIDLKAQRKFKTRT 511
BLAST of LR48_mrnaVigan04g233900 vs. DB:Swiss
Match: P2C06_ORYSJ (Probable protein phosphatase 2C 6 OS=Oryza sativa subsp. japonica OX=39947 GN=PP2C06 PE=1 SV=1) HSP 1 Score: 414.461 bits (1064), Expect = 1.038e-139 Identity = 209/330 (63.33%), Postives = 244/330 (73.94%), Query Frame = 1 Query: 646 RSVFELDCTPLWGFTSVCGKRPEMEDALATVPRFLKIPIQMLTGDRVPDGIDQCFREQTIHFFGVYDGHGGSQVANYCRERMHLALAEEIESVREGLLVESTKD--DCRDLWKKAFTSCFLKVDSEVGGDVNT-DPVAPETVGSTAVVAVICSSHIV-------------------------PNRPDEYARIEAAGGRVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMFVPRAKDDDCLILASDGLWDVMTNEEVCDIARRRILLWHKKNGL-PLPSER-GEGIDPAAQAAAEYLSNRALQKGSKDNISVIVVDLKAQRKFKSKT 1545 RSVF ++C PLWG S+CG+RPEMEDA+ V RF IP+ MLTG+ V DG+D HFFGVYDGHGG+QVANYCRER+H AL EE+ + EG + + + + W++AF CF +VD EVGG+ + + VAPETVGSTAVVAVICSSHI+ PNR DEYARIEA GG+VIQWNG+RVFGVLAMSRSIGDRYLKPWIIP PE+ VPRAKDD+CL+LASDGLWDVM+NEEVCD+AR+RILLWHKKNG P + R G+ DPAA+AAAE LS ALQKGSKDNISVIVVDLKA RKFKSK+ Sbjct: 139 RSVFAVECVPLWGHKSICGRRPEMEDAVVAVSRFFDIPLWMLTGNSVVDGLDPMSFRLPAHFFGVYDGHGGAQVANYCRERLHAALVEELSRI-EGSVSGANLGSVEFKKKWEQAFVDCFSRVDEEVGGNASRGEAVAPETVGSTAVVAVICSSHIIVANCGDSRAVLCRGKQPVPLSVDHKPNREDEYARIEAEGGKVIQWNGYRVFGVLAMSRSIGDRYLKPWIIPVPEITIVPRAKDDECLVLASDGLWDVMSNEEVCDVARKRILLWHKKNGTNPASAPRSGDSSDPAAEAAAECLSKLALQKGSKDNISVIVVDLKAHRKFKSKS 467
BLAST of LR48_mrnaVigan04g233900 vs. DB:Swiss
Match: P2C53_ORYSJ (Protein phosphatase 2C 53 OS=Oryza sativa subsp. japonica OX=39947 GN=PP2C53 PE=1 SV=1) HSP 1 Score: 402.134 bits (1032), Expect = 3.414e-135 Identity = 198/336 (58.93%), Postives = 235/336 (69.94%), Query Frame = 1 Query: 634 GTVGRSVFELDCTPLWGFTSVCGKRPEMEDALATVPRFLKIPIQMLTGDRVPDGIDQCFREQTIHFFGVYDGHGGSQVANYCRERMHLALAEEIESVREGLL-VESTKDDCRDLWKKAFTSCFLKVDSEVGGDVNTD--PVAPETVGSTAVVAVICSSHIV-------------------------PNRPDEYARIEAAGGRVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMFVPRAKDDDCLILASDGLWDVMTNEEVCDIARRRILLWHKKNGLPLPSE----RGEGIDPAAQAAAEYLSNRALQKGSKDNISVIVVDLKAQRKFKSKT 1545 G RSVF +DC PLWG S+CG+RPEMED A VPRF +P+ M+ GD DG+D+ HFF VYDGHGG QVANYCR+R+H L EE+ + + + + + LW+KAF CF +VD+EVGG+ + PVAP+TVGSTAVVAV+CSSH++ PNR DEYARIEA GG+VIQWNG+RV GVLAMSRSIGD+YLKP+IIP PEV V RAKDDDCLILASDGLWDVM+NEEVCD AR+RILLWHKKN + G+ DPAAQAAA+YLS ALQKGSKDNI+V+V+DLKA RKFKSK Sbjct: 110 GATARSVFAMDCVPLWGLESICGRRPEMEDDYAVVPRFFDLPLWMVAGDAAVDGLDRASFRLPAHFFAVYDGHGGVQVANYCRKRIHAVLTEELRRAEDDACGSDLSGLESKKLWEKAFVDCFSRVDAEVGGNAASGAPPVAPDTVGSTAVVAVVCSSHVIVANCGDSRAVLCRGKQPLPLSLDHKPNREDEYARIEALGGKVIQWNGYRVLGVLAMSRSIGDKYLKPYIIPVPEVTVVARAKDDDCLILASDGLWDVMSNEEVCDAARKRILLWHKKNAATASTSSAQISGDSSDPAAQAAADYLSKLALQKGSKDNITVVVIDLKAHRKFKSKA 445
BLAST of LR48_mrnaVigan04g233900 vs. DB:Swiss
Match: P2C07_ARATH (Protein phosphatase 2C 7 OS=Arabidopsis thaliana OX=3702 GN=HAB2 PE=1 SV=2) HSP 1 Score: 402.519 bits (1033), Expect = 1.857e-134 Identity = 199/337 (59.05%), Postives = 243/337 (72.11%), Query Frame = 1 Query: 646 RSVFELDCTPLWGFTSVCGKRPEMEDALATVPRFLKIPIQMLTGDRVPDGIDQCFREQTIHFFGVYDGHGGSQVANYCRERMHLALAEEIESVREGLLVESTKDDCRDLWKKAFTSCFLKVDSEVGGDVN-----------TDPVAPETVGSTAVVAVICSSHIV-------------------------PNRPDEYARIEAAGGRVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMFVPRAKDDDCLILASDGLWDVMTNEEVCDIARRRILLWHKKNG-LPLPSERGEGIDPAAQAAAEYLSNRALQKGSKDNISVIVVDLKAQRKFKSKT 1545 RSV+EL+C PLWG S+CG R EMEDA+ +P FLKIPI+ML GD +G+ T HFFGVYDGHGG+QVA+YC +R+H ALAEEIE ++E L +T + + W+K F C+LKVD EV G +N + V+PETVGSTAVVA++CSSHI+ P+R DEYARIE AGG+VIQW G RV GVLAMSRSIGD+YL+P++IPDPEV F+PRA++D+CLILASDGLWDVM+N+E CD ARRRIL WHKKNG LPL +ERG G D A QAAAEYLS A+Q GSKDNIS+IV+DLKAQRKFK+++ Sbjct: 178 RSVYELECIPLWGTISICGGRSEMEDAVRALPHFLKIPIKMLMGDH--EGMSPSLPYLTSHFFGVYDGHGGAQVADYCHDRIHSALAEEIERIKEELCRRNTGEGRQVQWEKVFVDCYLKVDDEVKGKINRPVVGSSDRMVLEAVSPETVGSTAVVALVCSSHIIVSNCGDSRAVLLRGKDSMPLSVDHKPDREDEYARIEKAGGKVIQWQGARVSGVLAMSRSIGDQYLEPFVIPDPEVTFMPRAREDECLILASDGLWDVMSNQEACDFARRRILAWHKKNGALPL-AERGVGEDQACQAAAEYLSKLAIQMGSKDNISIIVIDLKAQRKFKTRS 511
BLAST of LR48_mrnaVigan04g233900 vs. DB:Swiss
Match: P2C77_ARATH (Protein phosphatase 2C 77 OS=Arabidopsis thaliana OX=3702 GN=ABI2 PE=1 SV=1) HSP 1 Score: 383.259 bits (983), Expect = 3.510e-128 Identity = 201/339 (59.29%), Postives = 239/339 (70.50%), Query Frame = 1 Query: 619 ERSVSGTVGRSVFELDCTPLWGFTSVCGKRPEMEDALATVPRFLKIPIQMLTGDRVPDGIDQCFREQTIHFFGVYDGHGGSQVANYCRERMHLALAEEIESVREGLLVESTKDDCRDLWKKAFTSCFLKVDSEVGGDVNTDPVAPETVGSTAVVAVICSSHIV-------------------------PNRPDEYARIEAAGGRVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMFVPRAKDDDCLILASDGLWDVMTNEEVCDIARRRILLWHKKNGLP----LPSE-RGEGIDPAAQAAAEYLSNRALQKGSKDNISVIVVDLKAQRKFKSKT 1545 ++ +S T RS+FE C PL+G TS+CG+RPEMED+++T+PRFL++ L RV +G + + HFFGVYDGHGGSQVANYCRERMHLAL EEI + D ++ WKKA + F++VDSE+ T APETVGST+VVAV+ +HI P+R DE ARIEAAGG+VI+WNG RVFGVLAMSRSIGDRYLKP +IPDPEV V R K+DDCLILASDGLWDVMTNEEVCD+AR+RILLWHKKN + LP+E RGEG DPAA +AAEYLS ALQKGSKDNISV+VVDLK RKFKSK+ Sbjct: 93 KKVLSRTESRSLFEFKCVPLYGVTSICGRRPEMEDSVSTIPRFLQVSSSSLLDGRVTNGFNPHL---SAHFFGVYDGHGGSQVANYCRERMHLALTEEIVKEKPEFC---DGDTWQEKWKKALFNSFMRVDSEI----ETVAHAPETVGSTSVVAVVFPTHIFVANCGDSRAVLCRGKTPLALSVDHKPDRDDEAARIEAAGGKVIRWNGARVFGVLAMSRSIGDRYLKPSVIPDPEVTSVRRVKEDDCLILASDGLWDVMTNEEVCDLARKRILLWHKKNAMAGEALLPAEKRGEGKDPAAMSAAEYLSKMALQKGSKDNISVVVVDLKGIRKFKSKS 421
BLAST of LR48_mrnaVigan04g233900 vs. DB:Swiss
Match: P2C56_ARATH (Protein phosphatase 2C 56 OS=Arabidopsis thaliana OX=3702 GN=ABI1 PE=1 SV=2) HSP 1 Score: 369.392 bits (947), Expect = 1.420e-122 Identity = 198/340 (58.24%), Postives = 231/340 (67.94%), Query Frame = 1 Query: 619 ERSVSGTVGRSVFELDCTPLWGFTSVCGKRPEMEDALATVPRFLKIPI-QMLTGDRVPDGIDQCFREQTIHFFGVYDGHGGSQVANYCRERMHLALAEEIESVREGLLVESTKDDCRDLWKKAFTSCFLKVDSEVGGDVNTDPVAPETVGSTAVVAVICSSHIV-------------------------PNRPDEYARIEAAGGRVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMFVPRAKDDDCLILASDGLWDVMTNEEVCDIARRRILLWHKKNG------LPLPSERGEGIDPAAQAAAEYLSNRALQKGSKDNISVIVVDLKAQRKFKSK 1542 ++ +S T RS+FE PL+GFTS+CG+RPEMEDA++T+PRFL+ ML G P + HFFGVYDGHGGSQVANYCRERMHLALAEEI + L D + WKKA + FL+VDSE+ + VAPETVGST+VVAV+ SHI P+R DE ARIEAAGG+VIQWNG RVFGVLAMSRSIGDRYLKP IIPDPEV V R K+DDCLILASDG+WDVMT+EE C++AR+RILLWHKKN L R EG DPAA +AAEYLS A+Q+GSKDNISV+VVDLK +RK KSK Sbjct: 109 KKMISRTESRSLFEFKSVPLYGFTSICGRRPEMEDAVSTIPRFLQSSSGSMLDGRFDP--------QSAAHFFGVYDGHGGSQVANYCRERMHLALAEEIAKEKPMLC---DGDTWLEKWKKALFNSFLRVDSEI------ESVAPETVGSTSVVAVVFPSHIFVANCGDSRAVLCRGKTALPLSVDHKPDREDEAARIEAAGGKVIQWNGARVFGVLAMSRSIGDRYLKPSIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEACEMARKRILLWHKKNAVAGDASLLADERRKEGKDPAAMSAAEYLSKLAIQRGSKDNISVVVVDLKPRRKLKSK 431
BLAST of LR48_mrnaVigan04g233900 vs. DB:Swiss
Match: P2C50_ORYSJ (Protein phosphatase 2C 50 OS=Oryza sativa subsp. japonica OX=39947 GN=PP2C50 PE=1 SV=1) HSP 1 Score: 359.377 bits (921), Expect = 2.021e-119 Identity = 186/344 (54.07%), Postives = 235/344 (68.31%), Query Frame = 1 Query: 625 SVSGTVGRSVFELDCTPLWGFTSVCGKRPEMEDALATVPRFLKIPIQMLTGDRVPD--GIDQCFREQTIHFFGVYDGHGGSQVANYCRERMHLALAEEIESVREGLLVESTKDDCRDLWKKAFTSCFLKVDSEV----------GGDVNTDPVAPETVGSTAVVAVICSSHIV-------------------------PNRPDEYARIEAAGGRVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMFVPRAKDDDCLILASDGLWDVMTNEEVCDIARRRILLWHKKNGLPLP-SERGEG-IDPAAQAAAEYLSNRALQKGSKDNISVIVVDLKAQRKFKS 1539 + +G RSV+ +DC P+WG S G+ EMEDA A VPRF +P+++L R D G+D H FGV+DGHGG++VANYCRER+H+ L+EE++ + + L E + D ++ W FT CF +VD EV GG+V ++PV E VGSTAVVA++CSSH+V P+R DE ARIEA GG+VIQWNG+RV G+LAMSRSIGDRYLKP++IP PEVM VPRAKDDDCLILASDGLWDV++NEE C +ARR+ILLWHK NG P S+ GEG DPAAQAAA+YL AL+KGS+DNI+VIVVDLK ++K K+ Sbjct: 43 AAAGAGKRSVYLMDCAPVWGCASTRGRSAEMEDASAAVPRFADVPVRLLASRRDLDALGLDADALRLPAHLFGVFDGHGGAEVANYCRERIHVVLSEELKRLGKNL-GEMGEVDMKEHWDDVFTKCFQRVDDEVSGRVTRVVNGGGEVRSEPVTAENVGSTAVVALVCSSHVVVANCGDSRIVLCRGKEPVALSIDHKPDRKDERARIEAQGGKVIQWNGYRVSGILAMSRSIGDRYLKPFVIPKPEVMVVPRAKDDDCLILASDGLWDVVSNEEACKVARRQILLWHKNNGAASPLSDEGEGSTDPAAQAAADYLMRLALKKGSEDNITVIVVDLKPRKKLKN 385
BLAST of LR48_mrnaVigan04g233900 vs. DB:Swiss
Match: P2C08_ORYSJ (Probable protein phosphatase 2C 8 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0656200 PE=2 SV=1) HSP 1 Score: 224.557 bits (571), Expect = 7.636e-67 Identity = 140/320 (43.75%), Postives = 182/320 (56.88%), Query Frame = 1 Query: 682 GFTSVCGKRPEMEDALATVPRFLKIPIQMLTGDRVPDG---IDQCFREQTIHFFGVYDGHGGSQVANYCRERMHLALAEEIESVR---EGLLVESTKDDCRDLWKKAFTSCFLKVDSEVGGDVNTDPVAPETVGSTAVVAVICSSHIV-------------------------PNRPDEYARIEAAGGRVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMFVPRAKDDDCLILASDGLWDVMTNEEVCDIARRRILLWHKKNGLPLPSERGEGIDPAAQA-AAEYLSNRALQKGSKDNISVIVVDLKAQRKFKSKT 1545 G SV G+R EMEDA+ F+ P + + +G ++ +E+ FF VYDGHGGS+VA CRERMH+ LAEE+ R G +D+ R WK+A +CF +VD EVGG D +TVGSTAVVAV+ IV P+RPDE R+EAAGGRVI WNG+R+ GVLA SRSIGD YLKP++I +PEV + R D+ LILASDGLWDV++N+ C IA R L + P E + + A AA L A+ +GSKDNISV+VV+L R+ +S+T Sbjct: 92 GAVSVIGRRREMEDAI-----FVAAPFLAASKEAAVEGSGVAEEEGKEEDEGFFAVYDGHGGSRVAEACRERMHVVLAEEVRVRRLLQGGGGGADVEDEDRARWKEAMAACFTRVDGEVGGAEEAD-TGEQTVGSTAVVAVVGPRRIVVANCGDSRAVLSRGGVAVPLSSDHKPDRPDEMERVEAAGGRVINWNGYRILGVLATSRSIGDYYLKPYVIAEPEVTVMDRTDKDEFLILASDGLWDVVSNDVACKIA-RNCLSGRAASKYP------ESVSGSTAADAAALLVELAISRGSKDNISVVVVEL---RRLRSRT 395
BLAST of LR48_mrnaVigan04g233900 vs. DB:Swiss
Match: P2C09_ORYSJ (Probable protein phosphatase 2C 9 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0846300 PE=2 SV=1) HSP 1 Score: 210.305 bits (534), Expect = 2.557e-61 Identity = 131/346 (37.86%), Postives = 171/346 (49.42%), Query Frame = 1 Query: 673 PLWGFTSVCGKRPEMEDALATVPRFLKIPIQMLTGDRVPDGIDQCFREQTIHFFGVYDGHGGSQVANYCRERMHLALAEEIESVREGLLVESTKDDCRDLWKKAFTSCFLKVDSEVGGDVNT----DPVAP---------ETVGSTAVVAVICSSHIV-------------------------PNRPDEYARIEAAGGRVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMFVPRAKDDDCLILASDGLWDVMTNEEVCDIARRRILLWHKKNGLPLPSERGEGIDPAAQA--------------------------AAEYLSNRALQKGSKDNISVIVVDLK 1518 P +G T+VCG+R EMEDA++ P FL HF+GV+DGHG S VA C++RMH +AEE G + W+ F ++D EVG +T +P P + GSTAVVAV+ + +V P+RPDE RIEAAGGRVI W+G RV GVLAMSR+IGD YLKP++ +PEV R DD+CLILASDGLWDV+TNE C++ R +H NG P P+ R G+ +A+A AA L+ AL + S DN+SV+VVDL+ Sbjct: 98 PRYGVTAVCGRRREMEDAVSIRPDFLPA-------------------SGKFHFYGVFDGHGCSHVATTCQDRMHEIVAEEHNKGASGEVAP---------WRDVMEKSFARMDGEVGNRASTRSDDEPACPCEQQTPSRRDHAGSTAVVAVVSPTQVVVANAGDSRAVISRAGVPVALSVDHKPDRPDELERIEAAGGRVIYWDGARVLGVLAMSRAIGDGYLKPYVTSEPEVTVTERTDDDECLILASDGLWDVVTNEMACEVVR---ACFH-NNGPPAPAARPSGVPSSAEAAETENGGAASVKGISKAESSDKACSDAAMLLTKLALARRSADNVSVVVVDLR 411
BLAST of LR48_mrnaVigan04g233900 vs. DB:Swiss
Match: P2C51_ORYSJ (Protein phosphatase 2C 51 OS=Oryza sativa subsp. japonica OX=39947 GN=PP2C51 PE=1 SV=1) HSP 1 Score: 203.371 bits (516), Expect = 4.090e-59 Identity = 141/321 (43.93%), Postives = 177/321 (55.14%), Query Frame = 1 Query: 682 GFTSVCGKRPEMEDALATVPRFLKIPIQMLTGDRVPDGIDQCFREQTIHFFGVYDGHGGSQVANYCRERMHLALAEEIESVREGLLVESTKDDCRDLWKKAFTSCFLKVDSEVGGDV--------NTDPVAPETVGSTAVVAVICSSHIV-------------------------PNRPDEYARIEAAGGRVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMFVPRAKDDDCLILASDGLWDVMTNEEVCDIARRRILLWHKKNGLPLPSERGEGIDPAAQAAAEYLSNRALQKGSKDNISVIVVDLKAQRKFKSKT 1545 G SV G+R EMEDA+A F+ TGD G + E FF VYDGHGGS+VA CR+RMH+ LAEE+ S+R ++ D R WK+A + F ++D EV G V T+P TVGSTAVVAV+ IV P+RPDE R+EAAGGRVI WNG+RV GVLA SRSIGD YLKP++ +PEV V R D+ LILASDGLWDV++NE C IAR + NG +A AA L+ A+ +GS+DNISV+VV+L R+ KS+ Sbjct: 79 GSVSVIGRRREMEDAVAIERTFM-----ASTGD--GAGAIRGGGEGEEDFFAVYDGHGGSRVAEACRKRMHVVLAEEV-SLRRLRGQSASGGDVR--WKEAMLASFARMDGEVVGSVAAAAPRVDGTEPSGFRTVGSTAVVAVVGRRRIVVANCGDSRAVLSRGGVALPLSTDHKPDRPDELERVEAAGGRVINWNGYRVLGVLATSRSIGDYYLKPFVSAEPEVRVVERTDKDEFLILASDGLWDVVSNEVACKIARNCL------NGRAASMFPESVSGSSAADAAALLAELAVSRGSRDNISVVVVEL---RRLKSRA 380 The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan04g233900 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1) Total hits: 10
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g233900; organism=Vigna angularis; type=mRNA; length=3196bpback to top protein sequence of LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1 >LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=515bpback to top mRNA from alignment at Chr_4-CM003374.1:32701362..32704557+ Legend: polypeptidestart_codonexonCDSintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g233900; organism=Vigna angularis; type=mRNA; length=3196bp; location=Sequence derived from: Chr_4-CM003374.1:32701362..32704557+ (Vigna angularisback to top Coding sequence (CDS) from alignment at Chr_4-CM003374.1:32701362..32704557+ >LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g233900_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g233900; organism=Vigna angularis; type=CDS; length=1548bp; location=Sequence derived from: Chr_4-CM003374.1:32701362..32704557+ (Vigna angularisback to top |