LR48_mrnaVigan04g239000
|
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Homology
BLAST of LR48_mrnaVigan04g239000 vs. DB:Swiss
Match: RAX3_ARATH (Transcription factor RAX3 OS=Arabidopsis thaliana OX=3702 GN=RAX3 PE=2 SV=1) HSP 1 Score: 238.039 bits (606), Expect = 1.709e-75 Identity = 134/201 (66.67%), Postives = 155/201 (77.11%), Query Frame = 1 Query: 1 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTXXXXXXXXXXXXXXX---------ARSKENGVVKQENNSSLLLQENIVQQQPCWP------QIPAPPLSPYTSQNPSFNDQDSIRKLLIK 558
MGRAPCCDKANVKKGPWSPEEDAKLKSYIE GTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEE+NIICSLY++IGSRWS+IAAQLPGRTDNDIKNYWNTRLKKKL+ KQRKELQ + +Q+ +S +++++ Q WP Q+PA + +Q SF DQ+ ++ +LIK
Sbjct: 1 MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLINKQRKELQEACMEQQEMMVMMKRQHQQQQIQTSFMMRQD--QTMFTWPLHHHNVQVPA----LFMNQTNSFCDQEDVKPVLIK 195
BLAST of LR48_mrnaVigan04g239000 vs. DB:Swiss
Match: MYB36_ARATH (Transcription factor MYB36 OS=Arabidopsis thaliana OX=3702 GN=MYB36 PE=1 SV=1) HSP 1 Score: 232.261 bits (591), Expect = 6.403e-73 Identity = 102/111 (91.89%), Postives = 107/111 (96.40%), Query Frame = 1 Query: 1 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNT 333
MGRAPCCDKANVKKGPWSPEED KLK YI+++GTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEED II SLY+SIGSRWS+IAAQLPGRTDNDIKNYWNT
Sbjct: 1 MGRAPCCDKANVKKGPWSPEEDVKLKDYIDKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDRIILSLYISIGSRWSIIAAQLPGRTDNDIKNYWNT 111
BLAST of LR48_mrnaVigan04g239000 vs. DB:Swiss
Match: MYB87_ARATH (Transcription factor MYB87 OS=Arabidopsis thaliana OX=3702 GN=MYB87 PE=2 SV=1) HSP 1 Score: 220.32 bits (560), Expect = 1.218e-68 Identity = 94/111 (84.68%), Postives = 105/111 (94.59%), Query Frame = 1 Query: 1 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNT 333
MGRAPCCDK VKKGPWS EEDA LKSYIE+HGTG NWI+LPQ+IG+KRCGKSCRLRWLNYLRPN+KHGGF++EED IICSLY++IGSRWS+IA+QLPGRTDNDIKNYWNT
Sbjct: 1 MGRAPCCDKMAVKKGPWSTEEDAVLKSYIEKHGTGNNWISLPQRIGIKRCGKSCRLRWLNYLRPNLKHGGFTDEEDYIICSLYITIGSRWSIIASQLPGRTDNDIKNYWNT 111
BLAST of LR48_mrnaVigan04g239000 vs. DB:Swiss
Match: RAX2_ARATH (Transcription factor RAX2 OS=Arabidopsis thaliana OX=3702 GN=RAX2 PE=1 SV=1) HSP 1 Score: 217.238 bits (552), Expect = 1.468e-67 Identity = 96/111 (86.49%), Postives = 102/111 (91.89%), Query Frame = 1 Query: 1 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNT 333
MGRAPCCDKANVK+GPWSPEEDAKLK YIE+ GTGGNWIALP K GL+RCGKSCRLRWLNYLRPNI+HG F+EEEDNII SL+ SIGSRWSVIAA L GRTDNDIKNYWNT
Sbjct: 1 MGRAPCCDKANVKRGPWSPEEDAKLKDYIEKQGTGGNWIALPHKAGLRRCGKSCRLRWLNYLRPNIRHGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDIKNYWNT 111
BLAST of LR48_mrnaVigan04g239000 vs. DB:Swiss
Match: RAX1_ARATH (Transcription factor RAX1 OS=Arabidopsis thaliana OX=3702 GN=RAX1 PE=1 SV=1) HSP 1 Score: 207.608 bits (527), Expect = 2.439e-63 Identity = 89/111 (80.18%), Postives = 99/111 (89.19%), Query Frame = 1 Query: 1 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNT 333
MGRAPCCDK VK+GPWSPEED+KL+ YIE++G GGNWI+ P K GL+RCGKSCRLRWLNYLRPNIKHG FSEEED II SL+ +IGSRWS+IAA LPGRTDNDIKNYWNT
Sbjct: 1 MGRAPCCDKTKVKRGPWSPEEDSKLRDYIEKYGNGGNWISFPLKAGLRRCGKSCRLRWLNYLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYWNT 111
BLAST of LR48_mrnaVigan04g239000 vs. DB:Swiss
Match: MYB80_ARATH (Transcription factor MYB80 OS=Arabidopsis thaliana OX=3702 GN=MYB80 PE=1 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 1.307e-50 Identity = 76/111 (68.47%), Postives = 91/111 (81.98%), Query Frame = 1 Query: 1 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNT 333
MGR PCC+K NVK+G W+PEED KL SYI QHGT NW +P+ GL+RCGKSCRLRW NYLRP++KHG FSE E++II + +G+RWS+IAAQLPGRTDND+KNYWNT
Sbjct: 1 MGRIPCCEKENVKRGQWTPEEDNKLASYIAQHGTR-NWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGQFSEAEEHIIVKFHSVLGNRWSLIAAQLPGRTDNDVKNYWNT 110
BLAST of LR48_mrnaVigan04g239000 vs. DB:Swiss
Match: MY106_ARATH (Transcription factor MYB106 OS=Arabidopsis thaliana OX=3702 GN=MYB106 PE=2 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 1.377e-48 Identity = 73/111 (65.77%), Postives = 90/111 (81.08%), Query Frame = 1 Query: 1 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNT 333
MGR+PCCDKA +KKGPW+PEED KL +YIE+HG G +W +LP+K GL+RCGKSCRLRW NYLRP+IK G F+ +E+ I L+ +G+RWS IA LP RTDN+IKNYWNT
Sbjct: 1 MGRSPCCDKAGLKKGPWTPEEDQKLLAYIEEHGHG-SWRSLPEKAGLQRCGKSCRLRWTNYLRPDIKRGKFTVQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNT 110
BLAST of LR48_mrnaVigan04g239000 vs. DB:Swiss
Match: MYB4_ORYSJ (Transcription factor MYB4 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB4 PE=2 SV=2) HSP 1 Score: 165.622 bits (418), Expect = 4.760e-48 Identity = 72/111 (64.86%), Postives = 92/111 (82.88%), Query Frame = 1 Query: 1 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNT 333
MGRAPCC+K +KKGPW+PEED L ++I++HG G NW ALP++ GL RCGKSCRLRW+NYLRP+IK G FS+EE++ I L+ +G+RWS IAA+LPGRTDN+IKN W+T
Sbjct: 1 MGRAPCCEKMGLKKGPWTPEEDKVLVAHIQRHGHG-NWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWHT 110
BLAST of LR48_mrnaVigan04g239000 vs. DB:Swiss
Match: MYB16_ARATH (Transcription factor MYB16 OS=Arabidopsis thaliana OX=3702 GN=MYB16 PE=2 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 6.715e-48 Identity = 72/111 (64.86%), Postives = 88/111 (79.28%), Query Frame = 1 Query: 1 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNT 333
MGR+PCCDK +KKGPW+PEED KL +YIE+HG G +W +LP+K GL RCGKSCRLRW NYLRP+IK G F+ +E+ I L+ +G+RWS IA LP RTDN+IKNYWNT
Sbjct: 1 MGRSPCCDKLGLKKGPWTPEEDQKLLAYIEEHGHG-SWRSLPEKAGLHRCGKSCRLRWTNYLRPDIKRGKFNLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNT 110
BLAST of LR48_mrnaVigan04g239000 vs. DB:Swiss
Match: MYB80_ORYSJ (Transcription factor MYB80 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB80 PE=2 SV=2) HSP 1 Score: 167.548 bits (423), Expect = 1.986e-47 Identity = 73/111 (65.77%), Postives = 90/111 (81.08%), Query Frame = 1 Query: 1 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNT 333
MGR PCC+K NVK+G W+PEED KL SYI Q+GT NW +P+ GL+RCGKSCRLRW NYLRP++KHG F++ E+ I L+ +G+RWSVIAAQLPGRTDND+KN+WNT
Sbjct: 1 MGRVPCCEKDNVKRGQWTPEEDNKLLSYITQYGTR-NWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGEFTDAEEQTIIKLHSVVGNRWSVIAAQLPGRTDNDVKNHWNT 110 The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan04g239000 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan04g239000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g239000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g239000; organism=Vigna angularis; type=mRNA; length=1233bpback to top protein sequence of LR48_mrnaVigan04g239000_Va_Jingnong6_v1.1 >LR48_mrnaVigan04g239000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g239000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g239000_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=340bpback to top mRNA from alignment at Chr_4-CM003374.1:33102727..33103959+ Legend: polypeptidestart_codonexonCDSintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>LR48_mrnaVigan04g239000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g239000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g239000; organism=Vigna angularis; type=mRNA; length=1233bp; location=Sequence derived from: Chr_4-CM003374.1:33102727..33103959+ (Vigna angularisback to top Coding sequence (CDS) from alignment at Chr_4-CM003374.1:33102727..33103959+ >LR48_mrnaVigan04g239000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g239000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g239000; organism=Vigna angularis; type=CDS; length=1023bp; location=Sequence derived from: Chr_4-CM003374.1:33102727..33103959+ (Vigna angularisback to top |