LR48_mrnaVigan08g167000

Transcript Overview
NameLR48_mrnaVigan08g167000
Unique NameLR48_mrnaVigan08g167000_Va_Jingnong6_v1.1
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length1036
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_8-CM003378.1supercontigChr_8-CM003378.1:26858697..26859732 +Vigna angularis Jingnong 6 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna angularis Jingnong 6 genome v1.12020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.12020-05-21
BLAST: V. angularis Jingnong 6 genome v1.12020-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ascaR119Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR126Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anasL0088Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0301Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL1143Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL1201Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaiR180Cicer arietinum ICC 4958 genome v2Cicer arietinum
asccR0245Cajanus cajan Asha genome v1.0Cajanus cajan
ascrR149Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR171Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
aspsR157Pisum sativum Cameor genome v1aPisum sativum
aspsR167Pisum sativum Cameor genome v1aPisum sativum
aspvR130Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
asvuR093Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR129Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
astifR163Vicia faba cv. Tiffany genome v1.0Vicia faba
asvfhR133Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR165Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvrvR101Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR123Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvssR147Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR155Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR156Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvuaR088Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR125Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ascanR108Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR112Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Phvul.011G050500.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Cr_09382.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Ca_10856Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vigun08g019900.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vfaba.Hedin2.R1.3g227760.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-TanjilR_14671Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
evm.model.Chr08.537Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
jg35260.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-XM_014666378.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-KK1_012290Cajanus cajan Asha genome v1.0Cajanus cajan
evm.model.Chr11.1581.1.62113172Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-XM_004499047.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vigun11g169700.2Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LR48_Vigan08g167000gene-LR48_Vigan08g167000_Va_Jingnong6_v1.1Vigna angularisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan08g167000LR48_mrnaVigan08g167000_Va_Jingnong6_v1.1-proteinVigna angularispolypeptide
LR48_mrnaVigan08g167000_Va_Jingnong6_v1.1LR48_mrnaVigan08g167000_Va_Jingnong6_v1.1Vigna angularispolypeptide


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan08g167000_Va_Jingnong6_v1.1-start_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26858697..26858699LR48_mrnaVigan08g167000_Va_Jingnong6_v1.1-start_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26858697..26858699Vigna angularisstart_codon


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan08g167000_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26858697..26858765LR48_mrnaVigan08g167000_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26858697..26858765Vigna angularisexon
LR48_mrnaVigan08g167000_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26858972..26859494LR48_mrnaVigan08g167000_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26858972..26859494Vigna angularisexon
LR48_mrnaVigan08g167000_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26859587..26859732LR48_mrnaVigan08g167000_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26859587..26859732Vigna angularisexon


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan08g167000_Va_Jingnong6_v1.1-intron-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26858766..26858971LR48_mrnaVigan08g167000_Va_Jingnong6_v1.1-intron-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26858766..26858971Vigna angularisintron
LR48_mrnaVigan08g167000_Va_Jingnong6_v1.1-intron-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26859495..26859586LR48_mrnaVigan08g167000_Va_Jingnong6_v1.1-intron-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26859495..26859586Vigna angularisintron


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS7033CDS7033_Va_Jingnong6_v1.1Vigna angularisCDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan08g167000_Va_Jingnong6_v1.1-stop_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26859730..26859732LR48_mrnaVigan08g167000_Va_Jingnong6_v1.1-stop_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26859730..26859732Vigna angularisstop_codon


Homology
[Close]
BLAST of LR48_mrnaVigan08g167000 vs. DB:Swiss
Match: REM20_ARATH (B3 domain-containing protein REM20 OS=Arabidopsis thaliana OX=3702 GN=REM20 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.348e-12
Identity = 36/99 (36.36%), Postives = 52/99 (52.53%), Query Frame = 1 
Query:   10 AERYPDFFKVFLQEQHLERILIPNAFVKLERLQGKIPEDVLLRNSSERVWHVKTRFFGDRLYFDEGWKIFHEENCLRNVDFLIFRYDGVNEFRVKILER 306
            +E YP FFKVFL E   E ++IP  F+    L   +P+ V L+    ++W V  +      Y   GW  F EE+ L+N +F+ F YDG   F V + +R
Sbjct:    5 SELYPRFFKVFLVESASESLMIPLPFMAF--LADPLPKTVKLQGLGGKLWTVSLKKISGAAYLTRGWPKFAEEHELKNGEFMTFVYDGHRTFEVSVFDR 101
[Close]
BLAST of LR48_mrnaVigan08g167000 vs. DB:Swiss
Match: Y3622_ARATH (B3 domain-containing protein At3g06220 OS=Arabidopsis thaliana OX=3702 GN=At3g06220 PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 3.576e-10
Identity = 33/109 (30.28%), Postives = 56/109 (51.38%), Query Frame = 1 
Query:    1 MTGAERYPDFFKVFLQEQHLERILIPNAFVKLERLQGKIPEDVLLRNSSERVWHVKTRFFGDRLYFDEGWKIFHEENCLRNVDFLIFRYDGVNEFRVKILERSTQCEKT 327
            M   +  P F+ VFL       +LIP ++   E L  ++P+  +L  +  RVW V      +++Y   GW+ F  +N L++ +FL F +DG   + V I  R + C++T
Sbjct:    1 MASGDVLPRFYTVFLSCVSSNSLLIPRSY--YEHLPRRLPKTAILTGTGGRVWKVAMMSKREQVYLARGWENFVADNELKDGEFLTFVFDGYKSYEVSIYGRGS-CKET 106
[Close]
BLAST of LR48_mrnaVigan08g167000 vs. DB:Swiss
Match: REM21_ARATH (B3 domain-containing protein REM21 OS=Arabidopsis thaliana OX=3702 GN=REM21 PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 1.049e-9
Identity = 34/109 (31.19%), Postives = 55/109 (50.46%), Query Frame = 1 
Query:    1 MTGAERYPDFFKVFLQEQHLERILIPNAFVKLERLQGKIPEDVLLRNSSERVWHVKTRFFGDRLYFDEGWKIFHEENCLRNVDFLIFRYDGVNEFRVKILERSTQCEKT 327
            M   +  P FF VFL     E ++IP ++  L  L   +P+  +L  +  R W V      +++YF++GW  F  +N L+  +FL F +DG   + V I  R   C++T
Sbjct:   16 MASGDVLPRFFTVFLSHCSSESMVIPRSYYNL--LPRPLPKTAILIGTGGRFWKVAMTSKQEQVYFEQGWGNFVADNQLKEGEFLTFVFDGHKSYEVSIYGRG-DCKET 121
[Close]
BLAST of LR48_mrnaVigan08g167000 vs. DB:Swiss
Match: Y3440_ARATH (B3 domain-containing protein At4g34400 OS=Arabidopsis thaliana OX=3702 GN=At4g34400 PE=2 SV=2)

HSP 1 Score: 60.077 bits (144), Expect = 3.262e-9
Identity = 32/101 (31.68%), Postives = 50/101 (49.50%), Query Frame = 1 
Query:   22 PDFFKVFLQEQHLERILIPNAFVKLERLQGKIPEDVLLRNSSERVWHVKTRFFGDRLYFDEGWKIFHEENCLRNVDFLIFRYDGVNEFRVKILERSTQCEK 324
            P FF VF+     E ++IP ++   + +  + P+ V+LR      W V T    D + F +GW  F  +N L + DFL F Y+G + F V I      C++
Sbjct:   14 PRFFTVFVSHFSSEFMVIPVSY--YDHIPHRFPKTVILRGPGGCSWKVATEIKDDEVLFSQGWPKFVRDNTLNDGDFLTFAYNGAHIFEVSIFRGYDACKE 112
[Close]
BLAST of LR48_mrnaVigan08g167000 vs. DB:Swiss
Match: Y5698_ARATH (Putative B3 domain-containing protein At5g66980 OS=Arabidopsis thaliana OX=3702 GN=At5g66980 PE=1 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 1.321e-8
Identity = 33/95 (34.74%), Postives = 52/95 (54.74%), Query Frame = 1 
Query:   28 FFKVFLQEQHLERILIPNAFVKLERLQGKIPEDVLLRNSSERVWHVKTRFFGDR----LYFDEGWKIFHEENCLRNVDFLIFRYDGVNEFRVKIL 300
            FFKVFL E     ++IP AF+ +  L+  +P++  L +   R+W V+T+         ++F +GW+ F  +  L   DFL+F YDG + F V I 
Sbjct:   10 FFKVFLPEFGSHELVIPPAFIDM--LEKPLPKEAFLVDEIGRLWCVETKTEDTEERFCVFFTKGWQSFANDQSLEFGDFLVFSYDGDSRFSVTIF 102
[Close]
BLAST of LR48_mrnaVigan08g167000 vs. DB:Swiss
Match: Y1235_ORYSJ (B3 domain-containing protein Os01g0723500 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0723500 PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 1.723e-8
Identity = 37/113 (32.74%), Postives = 54/113 (47.79%), Query Frame = 1 
Query:   10 AERYPDFFKVFLQEQHLERILIPNAFVKL-----ERLQGKIPEDVL---LRNSSERVWHVKTRFFGDRLYFDEGWKIFHEENCLRNVDFLIFRYDGVNEFRVKILERSTQCEK 324
             ER P FFKV + +   +R+ IP  F K       R    + E  +   L   S R W V  R   +  +F  GW  F ++  LR ++F++FRYDG   F   + +R T CE+
Sbjct:   15 GERRPHFFKVLVGD-FKQRLKIPPNFCKHIPWEESRKAKGLKEASMAATLEGPSGRTWLVVIRRTAEGTFFTSGWPKFVQDQALRELEFVVFRYDGNTRFTAMVFDR-TACER 125
[Close]
BLAST of LR48_mrnaVigan08g167000 vs. DB:Swiss
Match: Y5772_ARATH (B3 domain-containing protein At5g57720 OS=Arabidopsis thaliana OX=3702 GN=At5g57720 PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 1.960e-8
Identity = 34/109 (31.19%), Postives = 55/109 (50.46%), Query Frame = 1 
Query:    4 TGAERYPDFFKVFLQEQHLERILIPNAFVKLERLQGKIPEDVLLRNSSERVWHVK-TRFFGDRLYFDEGWKIFHEENCLRNVDFLIFRYDGVNEFRVKILERSTQCEKT 327
             G   YPDF K+F   +  + ++IP ++ +       +P+  +L+N   R W+V+ T+     +   EGW  F ++N L + DFL+F YDG   F V+I       E T
Sbjct:    5 NGFPPYPDFLKIFNSHEDSQLLVIPRSYNRY--YPNPLPQTAVLKNPEGRFWNVQWTKSQEVIISLQEGWVKFVKDNGLIDRDFLLFTYDGSRSFWVRIHRNGLPLEPT 111
[Close]
BLAST of LR48_mrnaVigan08g167000 vs. DB:Swiss
Match: Y3216_ORYSJ (Putative B3 domain-containing protein Os03g0621600 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0621600 PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 3.923e-8
Identity = 36/103 (34.95%), Postives = 57/103 (55.34%), Query Frame = 1 
Query:   16 RYPDFFKVFLQEQHLERILIPNAFVKLERLQGKIPEDVLLRNSSERVWHVKTRFFGDRLYFDEGWKIFHEENCLRNVDFLIFRYDGVNEFRVKILERSTQCEK 324
            +Y +FFKV +  +  ER++IPN F  L+  +GKIP  + L+      + V+      ++    GWK F   + L+  DFL+F YDG+++ +V I   S  CEK
Sbjct:  730 QYKNFFKVMIG-RFRERMIIPNEF--LQYFRGKIPRTIKLQLRDGCTYDVQVTKNLGKISLQSGWKAFVTAHDLQMGDFLVFSYDGISKLKVLIFGPSG-CEK 828
[Close]
BLAST of LR48_mrnaVigan08g167000 vs. DB:Swiss
Match: Y1176_ORYSJ (B3 domain-containing protein Os11g0197600 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0197600 PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 4.763e-7
Identity = 32/95 (33.68%), Postives = 49/95 (51.58%), Query Frame = 1 
Query:   25 DFFKVFLQEQHLERILIPNAFVKLERLQGKIPEDVLLRNSSERVWHVKTRFFGDRLYFDEGWKIFHEENCLRNVDFLIFRYDGVNEFRVKILERS 309
             FF+V L  Q LER+ IP++F +   LQ +    V L + S   W  +     +  +F  GWK F  +N ++   FL+F YD  ++F V + E S
Sbjct:   31 SFFRVLLTLQSLERMKIPSSFNQC--LQNQPTGMVSLVDRSGNKWSAELTSDSEGFFFVHGWKEFVRDNSIQCGQFLVFTYDKRSQFSVTVFEPS 123
[Close]
BLAST of LR48_mrnaVigan08g167000 vs. DB:Swiss
Match: Y5013_ARATH (B3 domain-containing protein At5g60130 OS=Arabidopsis thaliana OX=3702 GN=At5g60130 PE=2 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 5.079e-7
Identity = 33/106 (31.13%), Postives = 56/106 (52.83%), Query Frame = 1 
Query:   22 PDFFKVFLQEQHLERILIPNAFVKLERLQGKIPEDVLLRNSSERVWHVK-TRFFGD----RLYFDEGWKIFHEENCLRNVDFLIFRYDGVNEFRVKILERSTQCEK 324
            P FFKV+L ++  + +++P +F +   L   +PE V +R+ S  +W ++  +  GD    +     GWK   ++  L+  DFL F +DG + F   I E  T C+K
Sbjct:   12 PKFFKVYLPDESGDDMVLPISFTRF--LPKSLPETVTVRSISGNIWKLELKKCCGDDDTEKFVMVNGWKRIVKDEDLKGGDFLEFEFDGSSCFHFCIYEHRTMCKK 115
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan08g167000 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 10
Match NameE-valueIdentityDescription
REM20_ARATH3.348e-1236.36B3 domain-containing protein REM20 OS=Arabidopsis ... [more]
Y3622_ARATH3.576e-1030.28B3 domain-containing protein At3g06220 OS=Arabidop... [more]
REM21_ARATH1.049e-931.19B3 domain-containing protein REM21 OS=Arabidopsis ... [more]
Y3440_ARATH3.262e-931.68B3 domain-containing protein At4g34400 OS=Arabidop... [more]
Y5698_ARATH1.321e-834.74Putative B3 domain-containing protein At5g66980 OS... [more]
Y1235_ORYSJ1.723e-832.74B3 domain-containing protein Os01g0723500 OS=Oryza... [more]
Y5772_ARATH1.960e-831.19B3 domain-containing protein At5g57720 OS=Arabidop... [more]
Y3216_ORYSJ3.923e-834.95Putative B3 domain-containing protein Os03g0621600... [more]
Y1176_ORYSJ4.763e-733.68B3 domain-containing protein Os11g0197600 OS=Oryza... [more]
Y5013_ARATH5.079e-731.13B3 domain-containing protein At5g60130 OS=Arabidop... [more]
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InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 110..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 188..208
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 112..220
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 134..180
IPR003340B3 DNA binding domainSMARTSM01019B3_2coord: 10..103
e-value: 1.5E-9
score: 47.8
IPR003340B3 DNA binding domainPFAMPF02362B3coord: 10..102
e-value: 1.2E-12
score: 47.5
IPR003340B3 DNA binding domainPROSITEPS50863B3coord: 8..103
score: 12.308
IPR003340B3 DNA binding domainCDDcd10017B3_DNAcoord: 8..100
e-value: 9.53143E-15
score: 65.8121
IPR015300DNA-binding pseudobarrel domain superfamilyGENE3D2.40.330.10coord: 3..106
e-value: 1.3E-24
score: 88.0
IPR015300DNA-binding pseudobarrel domain superfamilySUPERFAMILY101936DNA-binding pseudobarrel domaincoord: 7..103

Sequences
The following sequences are available for this feature:

mRNA sequence

>LR48_mrnaVigan08g167000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g167000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g167000; organism=Vigna angularis; type=mRNA; length=1036bp
ATGACTGGTGCAGAGAGGTACCCAGACTTCTTCAAAGTCTTCCTTCAAGA
GCAGCACTTGGAAAGAATAGTAATTTCTTCATATACTTTCTGCAAGGATA
ATAGTATTGGTGTTCTTAGATTACTATTCAGAATATTAATACTTAGATTT
ACTGAAAATAGTAAGAGTTATAACAATTTAGTTATATCTCTATACAAATG
CAGTTTTTTATTCCAAACACTATCAAAGTATTATAATATCTAAAGtattg
ttctttttcttctctcaaatTGCAGCTTATTCCCAATGCTTTTGTGAAGT
TGGAACGGTTACAGGGAAAGATCCCTGAGGATGTCCTCCTCAGGAATAGT
AGTGAGAGAGTGTGGCATGTTAAAACACGGTTTTTTGGAGACAGATTATA
TTTCGATGAAGGGTGGAAGATTTTCCATGAAGAAAACTGCTTAAGAAATG
TAGATTTTCTGATATTTAGATATGACGGAGTTAATGAGTTCAGGGTCAAA
ATCCTTGAAAGATCAACACAGTGTGAGAAAACTCTGGTAAAGATGGAGGA
GGAGGAAGGGAATGAAGAAGAGAAAGCAGCAACACAAGAAGTTGAAGAGA
CAGTGATAACACAGGAGGAACAAGCTGATGACTGTGACATAGAGGACGAG
GAAGACAGTGAAGATCAGGACTACGATGACGATGACAATGACGATAGTGA
TTTTGATGAGAACACAGAGATGGAAGAACAGAGTGAAGAAGAAATCTTCG
TTGATCCTGTTGGATACACCAGTCAAAGTTATCGAAAAACTTGCAGAAGT
AAGTTTTCAGCTTCATGTCGAAAACCAGTTTTTTTTTCCCCATATATGAG
AGCATGAATCAGCCTTTACCCACTGATTTATCTTTCTTAGGGGACACTGC
ATCAAATTCGTACCCCCAGACTGAAGACCCTTTcaaagaagatgaatttg
aCCCAGAAACGTGCATTCAGCCagagaataatttttttgaagcAAAACTC
TACAGAAGTAGACCCAACGAATTGGTTAGAACTTAG
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protein sequence of LR48_mrnaVigan08g167000_Va_Jingnong6_v1.1

>LR48_mrnaVigan08g167000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g167000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g167000_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=245bp
MTGAERYPDFFKVFLQEQHLERILIPNAFVKLERLQGKIPEDVLLRNSSE
RVWHVKTRFFGDRLYFDEGWKIFHEENCLRNVDFLIFRYDGVNEFRVKIL
ERSTQCEKTLVKMEEEEGNEEEKAATQEVEETVITQEEQADDCDIEDEED
SEDQDYDDDDNDDSDFDENTEMEEQSEEEIFVDPVGYTSQSYRKTCRRDT
ASNSYPQTEDPFKEDEFDPETCIQPENNFFEAKLYRSRPNELVRT
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mRNA from alignment at Chr_8-CM003378.1:26858697..26859732+

Legend: polypeptidestart_codonexonCDSintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan08g167000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g167000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g167000; organism=Vigna angularis; type=mRNA; length=1036bp; location=Sequence derived from: Chr_8-CM003378.1:26858697..26859732+ (Vigna angularis
ATGACTGGTGCAGAGAGGTACCCAGACTTCTTCAAAGTCTTCCTTCAAGA
GCAGCACTTGGAAAGAATAGTAATTTCTTCATATACTTTCTGCAAGGATA
ATAGTATTGGTGTTCTTAGATTACTATTCAGAATATTAATACTTAGATTT
ACTGAAAATAGTAAGAGTTATAACAATTTAGTTATATCTCTATACAAATG
CAGTTTTTTATTCCAAACACTATCAAAGTATTATAATATCTAAAGtattg
ttctttttcttctctcaaatTGCAGCTTATTCCCAATGCTTTTGTGAAGT
TGGAACGGTTACAGGGAAAGATCCCTGAGGATGTCCTCCTCAGGAATAGT
AGTGAGAGAGTGTGGCATGTTAAAACACGGTTTTTTGGAGACAGATTATA
TTTCGATGAAGGGTGGAAGATTTTCCATGAAGAAAACTGCTTAAGAAATG
TAGATTTTCTGATATTTAGATATGACGGAGTTAATGAGTTCAGGGTCAAA
ATCCTTGAAAGATCAACACAGTGTGAGAAAACTCTGGTAAAGATGGAGGA
GGAGGAAGGGAATGAAGAAGAGAAAGCAGCAACACAAGAAGTTGAAGAGA
CAGTGATAACACAGGAGGAACAAGCTGATGACTGTGACATAGAGGACGAG
GAAGACAGTGAAGATCAGGACTACGATGACGATGACAATGACGATAGTGA
TTTTGATGAGAACACAGAGATGGAAGAACAGAGTGAAGAAGAAATCTTCG
TTGATCCTGTTGGATACACCAGTCAAAGTTATCGAAAAACTTGCAGAAGT
AAGTTTTCAGCTTCATGTCGAAAACCAGTTTTTTTTTCCCCATATATGAG
AGCATGAATCAGCCTTTACCCACTGATTTATCTTTCTTAGGGGACACTGC
ATCAAATTCGTACCCCCAGACTGAAGACCCTTTcaaagaagatgaatttg
aCCCAGAAACGTGCATTCAGCCagagaataatttttttgaagcAAAACTC
TACAGAAGTAGACCCAACGAATTGGTTAGAACTTAG
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Coding sequence (CDS) from alignment at Chr_8-CM003378.1:26858697..26859732+

>LR48_mrnaVigan08g167000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g167000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g167000; organism=Vigna angularis; type=CDS; length=738bp; location=Sequence derived from: Chr_8-CM003378.1:26858697..26859732+ (Vigna angularis
ATGACTGGTGCAGAGAGGTACCCAGACTTCTTCAAAGTCTTCCTTCAAGA
GCAGCACTTGGAAAGAATACTTATTCCCAATGCTTTTGTGAAGTTGGAAC
GGTTACAGGGAAAGATCCCTGAGGATGTCCTCCTCAGGAATAGTAGTGAG
AGAGTGTGGCATGTTAAAACACGGTTTTTTGGAGACAGATTATATTTCGA
TGAAGGGTGGAAGATTTTCCATGAAGAAAACTGCTTAAGAAATGTAGATT
TTCTGATATTTAGATATGACGGAGTTAATGAGTTCAGGGTCAAAATCCTT
GAAAGATCAACACAGTGTGAGAAAACTCTGGTAAAGATGGAGGAGGAGGA
AGGGAATGAAGAAGAGAAAGCAGCAACACAAGAAGTTGAAGAGACAGTGA
TAACACAGGAGGAACAAGCTGATGACTGTGACATAGAGGACGAGGAAGAC
AGTGAAGATCAGGACTACGATGACGATGACAATGACGATAGTGATTTTGA
TGAGAACACAGAGATGGAAGAACAGAGTGAAGAAGAAATCTTCGTTGATC
CTGTTGGATACACCAGTCAAAGTTATCGAAAAACTTGCAGAAGGGACACT
GCATCAAATTCGTACCCCCAGACTGAAGACCCTTTcaaagaagatgaatt
tgaCCCAGAAACGTGCATTCAGCCagagaataatttttttgaagcAAAAC
TCTACAGAAGTAGACCCAACGAATTGGTTAGAACTTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR003340B3_DNA-bd
IPR015300DNA-bd_pseudobarrel_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding