Transcript Overview
Name | LR48_mrnaVigan08g173700 |
Unique Name | LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1 |
Type | mRNA |
Organism | Vigna angularis (Adzuki bean, red mung bean, azuki) |
Sequence length | 846 |
Product | hypothetical protein |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
LR48_mrnaVigan08g173700 | LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1-protein | Vigna angularis | polypeptide |
LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1 | LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1 | Vigna angularis | polypeptide |
The following start_codon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1-start_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27416550..27416552 | LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1-start_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27416550..27416552 | Vigna angularis | start_codon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1-CDS-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27415707..27416552 | LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1-CDS-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27415707..27416552 | Vigna angularis | CDS |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27415707..27416552 | LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27415707..27416552 | Vigna angularis | exon |
The following stop_codon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1-stop_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27415707..27415709 | LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1-stop_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27415707..27415709 | Vigna angularis | stop_codon |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | COILS | Coil | Coil | coord: 61..81 |
IPR004320 | Protein of unknown function DUF241, plant | PFAM | PF03087 | DUF241 | coord: 54..278 e-value: 4.6E-66 score: 222.9 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g173700; organism=Vigna angularis; type=mRNA; length=846bp ATGGCAGTCATTGAAAAGAGAACACAAAACTCTCTACATCTTCGCAGCAA CAGCTTGCCCTCTGCAGCTCACCCTTTTGTATCACAATTTGAGGAGCATT TGAGAAGATTGAGAGGTTCTGAAGCCACTTCTTCATTGTCATCATCTTCG GTGAGCCACAAACTTAACGAGATGCTCGATTTGCAAGATTACACCGATAA GTTGCTTCAATTGACAACTGAACAGCAAGTTTTAGCCCGGGAGTGCAATG AAAAATGGGGTGATGATCTACTAGAAGGGTCTCTTAGGCTCTTAGATATC TGTGCTGCAGCTAAAGATTGTCTTCAGCAATCAAAGCAAAGCATGTGTGA CTTAATGTCAGTCATGAGAAGAAAGAAAGGCAATGAAACCGGATTCGCGG TTGAAAGTGTGAAATACTTAGCTGTGAGGAAGAAGATCAAGAAGCAAATT CGAAAGGCCCTGCTAAATTTGAAGCACAAGGACAACAACACTTCACCCAT GCTCAGCTTCTTAGATGAAGCAGAAGCAATCACCATAAGCTCATTAGAAA GTTTGTTACTTTTTATCTCTGCTCCAAAAGAACATAGCAGATGGTCAGCA ATCTCCAAGTTGGTGCGGCCTAAAAGAGTTATTTGTGACTCTCAAGAATC AACCATAAATGAATTTGAAAAGGTGGATGCAGCTTTGCAGTCTCTCATCA GTCACAAACCTTCATCCACTGAGAATTTTCAAAGTCATATGGAAAATTTG GAGCTGTGCATCCAAGATCTGGAGATAGGAGTTGATCATCTCTCAAGAAA ATTAATTAGAAACAGAGTTTCCCTTCTCAACATCTTCAACCACTAA back to topprotein sequence of LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1 >LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=281bp MAVIEKRTQNSLHLRSNSLPSAAHPFVSQFEEHLRRLRGSEATSSLSSSS VSHKLNEMLDLQDYTDKLLQLTTEQQVLARECNEKWGDDLLEGSLRLLDI CAAAKDCLQQSKQSMCDLMSVMRRKKGNETGFAVESVKYLAVRKKIKKQI RKALLNLKHKDNNTSPMLSFLDEAEAITISSLESLLLFISAPKEHSRWSA ISKLVRPKRVICDSQESTINEFEKVDAALQSLISHKPSSTENFQSHMENL ELCIQDLEIGVDHLSRKLIRNRVSLLNIFNH back to topmRNA from alignment at Chr_8-CM003378.1:27415707..27416552- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g173700; organism=Vigna angularis; type=mRNA; length=846bp; location=Sequence derived from: Chr_8-CM003378.1:27415707..27416552- (Vigna angularis ATGGCAGTCATTGAAAAGAGAACACAAAACTCTCTACATCTTCGCAGCAA
CAGCTTGCCCTCTGCAGCTCACCCTTTTGTATCACAATTTGAGGAGCATT
TGAGAAGATTGAGAGGTTCTGAAGCCACTTCTTCATTGTCATCATCTTCG
GTGAGCCACAAACTTAACGAGATGCTCGATTTGCAAGATTACACCGATAA
GTTGCTTCAATTGACAACTGAACAGCAAGTTTTAGCCCGGGAGTGCAATG
AAAAATGGGGTGATGATCTACTAGAAGGGTCTCTTAGGCTCTTAGATATC
TGTGCTGCAGCTAAAGATTGTCTTCAGCAATCAAAGCAAAGCATGTGTGA
CTTAATGTCAGTCATGAGAAGAAAGAAAGGCAATGAAACCGGATTCGCGG
TTGAAAGTGTGAAATACTTAGCTGTGAGGAAGAAGATCAAGAAGCAAATT
CGAAAGGCCCTGCTAAATTTGAAGCACAAGGACAACAACACTTCACCCAT
GCTCAGCTTCTTAGATGAAGCAGAAGCAATCACCATAAGCTCATTAGAAA
GTTTGTTACTTTTTATCTCTGCTCCAAAAGAACATAGCAGATGGTCAGCA
ATCTCCAAGTTGGTGCGGCCTAAAAGAGTTATTTGTGACTCTCAAGAATC
AACCATAAATGAATTTGAAAAGGTGGATGCAGCTTTGCAGTCTCTCATCA
GTCACAAACCTTCATCCACTGAGAATTTTCAAAGTCATATGGAAAATTTG
GAGCTGTGCATCCAAGATCTGGAGATAGGAGTTGATCATCTCTCAAGAAA
ATTAATTAGAAACAGAGTTTCCCTTCTCAACATCTTCAACCACTAA back to topCoding sequence (CDS) from alignment at Chr_8-CM003378.1:27415707..27416552- >LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g173700; organism=Vigna angularis; type=CDS; length=846bp; location=Sequence derived from: Chr_8-CM003378.1:27415707..27416552- (Vigna angularis ATGGCAGTCATTGAAAAGAGAACACAAAACTCTCTACATCTTCGCAGCAA CAGCTTGCCCTCTGCAGCTCACCCTTTTGTATCACAATTTGAGGAGCATT TGAGAAGATTGAGAGGTTCTGAAGCCACTTCTTCATTGTCATCATCTTCG GTGAGCCACAAACTTAACGAGATGCTCGATTTGCAAGATTACACCGATAA GTTGCTTCAATTGACAACTGAACAGCAAGTTTTAGCCCGGGAGTGCAATG AAAAATGGGGTGATGATCTACTAGAAGGGTCTCTTAGGCTCTTAGATATC TGTGCTGCAGCTAAAGATTGTCTTCAGCAATCAAAGCAAAGCATGTGTGA CTTAATGTCAGTCATGAGAAGAAAGAAAGGCAATGAAACCGGATTCGCGG TTGAAAGTGTGAAATACTTAGCTGTGAGGAAGAAGATCAAGAAGCAAATT CGAAAGGCCCTGCTAAATTTGAAGCACAAGGACAACAACACTTCACCCAT GCTCAGCTTCTTAGATGAAGCAGAAGCAATCACCATAAGCTCATTAGAAA GTTTGTTACTTTTTATCTCTGCTCCAAAAGAACATAGCAGATGGTCAGCA ATCTCCAAGTTGGTGCGGCCTAAAAGAGTTATTTGTGACTCTCAAGAATC AACCATAAATGAATTTGAAAAGGTGGATGCAGCTTTGCAGTCTCTCATCA GTCACAAACCTTCATCCACTGAGAATTTTCAAAGTCATATGGAAAATTTG GAGCTGTGCATCCAAGATCTGGAGATAGGAGTTGATCATCTCTCAAGAAA ATTAATTAGAAACAGAGTTTCCCTTCTCAACATCTTCAACCACTAA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
Term | Definition |
IPR004320 | BPS1_pln |
|