LR48_mrnaVigan08g173700

Transcript Overview
NameLR48_mrnaVigan08g173700
Unique NameLR48_mrnaVigan08g173700_Va_Jingnong6_v1.1
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length846
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_8-CM003378.1supercontigChr_8-CM003378.1:27415707..27416552 -Vigna angularis Jingnong 6 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna angularis Jingnong 6 genome v1.12020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.12020-05-21
BLAST: V. angularis Jingnong 6 genome v1.12020-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ascaR119Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR125Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR126Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR149Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
asasL001Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asasR074Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asasR080Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asasR095Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasL0088Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0301Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0415Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0537Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0814Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL1143Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL1201Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaiR179Cicer arietinum ICC 4958 genome v2Cicer arietinum
ascaiR180Cicer arietinum ICC 4958 genome v2Cicer arietinum
ascaiR182Cicer arietinum ICC 4958 genome v2Cicer arietinum
asccR0245Cajanus cajan Asha genome v1.0Cajanus cajan
ascrR151Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR171Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR187Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
aspsR111Pisum sativum Cameor genome v1aPisum sativum
aspsR128Pisum sativum Cameor genome v1aPisum sativum
aspsR154Pisum sativum Cameor genome v1aPisum sativum
aspsR159Pisum sativum Cameor genome v1aPisum sativum
aspsR165Pisum sativum Cameor genome v1aPisum sativum
aspvR130Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR171Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
asvuR093Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR129Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR130Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR131Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
astifR126Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR149Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR161Vicia faba cv. Tiffany genome v1.0Vicia faba
asvfhR127Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR133Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR153Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR166Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvrvR101Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR117Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR119Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR123Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvssR117Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR145Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR148Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR155Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR160Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvuaR088Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR125Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR127Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ascanR108Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR111Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR112Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR136Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Cr_15839.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
jg30474.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigun09g266200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Ca_18846.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
rna-XM_004507409.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-XM_014666331.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vfaba.Hedin2.R1.6g053360.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Psat7g183720.1Pisum sativum Cameor genome v1aPisum sativum
evm.model.Chr11.1650Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
evm.model.Chr09.1117Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Ca_15385Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Phvul.009G022900.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-TanjilR_17308Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-KK1_012383Cajanus cajan Asha genome v1.0Cajanus cajan
Vfaba.Tiffany.R1.6g044240.1Vicia faba cv. Tiffany genome v1.0Vicia faba

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
LR48_mrnaVigan04g252500Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LR48_Vigan08g173700gene-LR48_Vigan08g173700_Va_Jingnong6_v1.1Vigna angularisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan08g173700LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1-proteinVigna angularispolypeptide
LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1Vigna angularispolypeptide


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1-start_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27416550..27416552LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1-start_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27416550..27416552Vigna angularisstart_codon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1-CDS-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27415707..27416552LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1-CDS-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27415707..27416552Vigna angularisCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27415707..27416552LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27415707..27416552Vigna angularisexon


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1-stop_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27415707..27415709LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1-stop_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27415707..27415709Vigna angularisstop_codon


Homology
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan08g173700 vs.
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 61..81
IPR004320Protein of unknown function DUF241, plantPFAMPF03087DUF241coord: 54..278
e-value: 4.6E-66
score: 222.9

Sequences
The following sequences are available for this feature:

mRNA sequence

>LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g173700; organism=Vigna angularis; type=mRNA; length=846bp
ATGGCAGTCATTGAAAAGAGAACACAAAACTCTCTACATCTTCGCAGCAA
CAGCTTGCCCTCTGCAGCTCACCCTTTTGTATCACAATTTGAGGAGCATT
TGAGAAGATTGAGAGGTTCTGAAGCCACTTCTTCATTGTCATCATCTTCG
GTGAGCCACAAACTTAACGAGATGCTCGATTTGCAAGATTACACCGATAA
GTTGCTTCAATTGACAACTGAACAGCAAGTTTTAGCCCGGGAGTGCAATG
AAAAATGGGGTGATGATCTACTAGAAGGGTCTCTTAGGCTCTTAGATATC
TGTGCTGCAGCTAAAGATTGTCTTCAGCAATCAAAGCAAAGCATGTGTGA
CTTAATGTCAGTCATGAGAAGAAAGAAAGGCAATGAAACCGGATTCGCGG
TTGAAAGTGTGAAATACTTAGCTGTGAGGAAGAAGATCAAGAAGCAAATT
CGAAAGGCCCTGCTAAATTTGAAGCACAAGGACAACAACACTTCACCCAT
GCTCAGCTTCTTAGATGAAGCAGAAGCAATCACCATAAGCTCATTAGAAA
GTTTGTTACTTTTTATCTCTGCTCCAAAAGAACATAGCAGATGGTCAGCA
ATCTCCAAGTTGGTGCGGCCTAAAAGAGTTATTTGTGACTCTCAAGAATC
AACCATAAATGAATTTGAAAAGGTGGATGCAGCTTTGCAGTCTCTCATCA
GTCACAAACCTTCATCCACTGAGAATTTTCAAAGTCATATGGAAAATTTG
GAGCTGTGCATCCAAGATCTGGAGATAGGAGTTGATCATCTCTCAAGAAA
ATTAATTAGAAACAGAGTTTCCCTTCTCAACATCTTCAACCACTAA
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protein sequence of LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1

>LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=281bp
MAVIEKRTQNSLHLRSNSLPSAAHPFVSQFEEHLRRLRGSEATSSLSSSS
VSHKLNEMLDLQDYTDKLLQLTTEQQVLARECNEKWGDDLLEGSLRLLDI
CAAAKDCLQQSKQSMCDLMSVMRRKKGNETGFAVESVKYLAVRKKIKKQI
RKALLNLKHKDNNTSPMLSFLDEAEAITISSLESLLLFISAPKEHSRWSA
ISKLVRPKRVICDSQESTINEFEKVDAALQSLISHKPSSTENFQSHMENL
ELCIQDLEIGVDHLSRKLIRNRVSLLNIFNH
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mRNA from alignment at Chr_8-CM003378.1:27415707..27416552-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g173700; organism=Vigna angularis; type=mRNA; length=846bp; location=Sequence derived from: Chr_8-CM003378.1:27415707..27416552- (Vigna angularis
ATGGCAGTCATTGAAAAGAGAACACAAAACTCTCTACATCTTCGCAGCAA
CAGCTTGCCCTCTGCAGCTCACCCTTTTGTATCACAATTTGAGGAGCATT
TGAGAAGATTGAGAGGTTCTGAAGCCACTTCTTCATTGTCATCATCTTCG
GTGAGCCACAAACTTAACGAGATGCTCGATTTGCAAGATTACACCGATAA
GTTGCTTCAATTGACAACTGAACAGCAAGTTTTAGCCCGGGAGTGCAATG
AAAAATGGGGTGATGATCTACTAGAAGGGTCTCTTAGGCTCTTAGATATC
TGTGCTGCAGCTAAAGATTGTCTTCAGCAATCAAAGCAAAGCATGTGTGA
CTTAATGTCAGTCATGAGAAGAAAGAAAGGCAATGAAACCGGATTCGCGG
TTGAAAGTGTGAAATACTTAGCTGTGAGGAAGAAGATCAAGAAGCAAATT
CGAAAGGCCCTGCTAAATTTGAAGCACAAGGACAACAACACTTCACCCAT
GCTCAGCTTCTTAGATGAAGCAGAAGCAATCACCATAAGCTCATTAGAAA
GTTTGTTACTTTTTATCTCTGCTCCAAAAGAACATAGCAGATGGTCAGCA
ATCTCCAAGTTGGTGCGGCCTAAAAGAGTTATTTGTGACTCTCAAGAATC
AACCATAAATGAATTTGAAAAGGTGGATGCAGCTTTGCAGTCTCTCATCA
GTCACAAACCTTCATCCACTGAGAATTTTCAAAGTCATATGGAAAATTTG
GAGCTGTGCATCCAAGATCTGGAGATAGGAGTTGATCATCTCTCAAGAAA
ATTAATTAGAAACAGAGTTTCCCTTCTCAACATCTTCAACCACTAA
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Coding sequence (CDS) from alignment at Chr_8-CM003378.1:27415707..27416552-

>LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g173700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g173700; organism=Vigna angularis; type=CDS; length=846bp; location=Sequence derived from: Chr_8-CM003378.1:27415707..27416552- (Vigna angularis
ATGGCAGTCATTGAAAAGAGAACACAAAACTCTCTACATCTTCGCAGCAA
CAGCTTGCCCTCTGCAGCTCACCCTTTTGTATCACAATTTGAGGAGCATT
TGAGAAGATTGAGAGGTTCTGAAGCCACTTCTTCATTGTCATCATCTTCG
GTGAGCCACAAACTTAACGAGATGCTCGATTTGCAAGATTACACCGATAA
GTTGCTTCAATTGACAACTGAACAGCAAGTTTTAGCCCGGGAGTGCAATG
AAAAATGGGGTGATGATCTACTAGAAGGGTCTCTTAGGCTCTTAGATATC
TGTGCTGCAGCTAAAGATTGTCTTCAGCAATCAAAGCAAAGCATGTGTGA
CTTAATGTCAGTCATGAGAAGAAAGAAAGGCAATGAAACCGGATTCGCGG
TTGAAAGTGTGAAATACTTAGCTGTGAGGAAGAAGATCAAGAAGCAAATT
CGAAAGGCCCTGCTAAATTTGAAGCACAAGGACAACAACACTTCACCCAT
GCTCAGCTTCTTAGATGAAGCAGAAGCAATCACCATAAGCTCATTAGAAA
GTTTGTTACTTTTTATCTCTGCTCCAAAAGAACATAGCAGATGGTCAGCA
ATCTCCAAGTTGGTGCGGCCTAAAAGAGTTATTTGTGACTCTCAAGAATC
AACCATAAATGAATTTGAAAAGGTGGATGCAGCTTTGCAGTCTCTCATCA
GTCACAAACCTTCATCCACTGAGAATTTTCAAAGTCATATGGAAAATTTG
GAGCTGTGCATCCAAGATCTGGAGATAGGAGTTGATCATCTCTCAAGAAA
ATTAATTAGAAACAGAGTTTCCCTTCTCAACATCTTCAACCACTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR004320BPS1_pln