LR48_mrnaVigan08g175000
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Homology
BLAST of LR48_mrnaVigan08g175000 vs. DB:Swiss
Match: NOP5B_ARATH (Probable nucleolar protein 5-2 OS=Arabidopsis thaliana OX=3702 GN=NOP5-2 PE=1 SV=1) HSP 1 Score: 731.48 bits (1887), Expect = 0.000e+0 Identity = 364/445 (81.80%), Postives = 413/445 (92.81%), Query Frame = 1 Query: 1 MLVLFETPAGFALFKVLDEGKLSKVEDLWKDFSSADTARQVVKLKAFSKFENTSEALEAATLLIDGKASKGLRKFLRVHCENETLGVADSKLGNVIKEKLKIDCIHNNAVMELMRGVRNQLTELISGLAVQDMAPMSLGLSHSLSRYKLKFSADKVDTMIVQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVQDNIQYARAVKLMGDRVNAAELDFXXXXXXXXXXXXXXXXXXSMGTEIGDLDLANIRELCDQVLALSEYRAQLYDYLKSRMNTIAPNLTAMVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLIGQAAAKFKGKISRSLAAKTALAIRCDALGDGQDNTMGLENRAKLEARLRNLEGKELGRFAGSAKGKPKIEAYDKDRKKGAGGLITPAKTYNASADSVIGQ 1335 +LVL+ET AGFALFKV DEGK++ VEDL K+F + D+AR++VKLKAF KF+NTSEALEA L++G SKGLRKFL+ +C+ ETL VADSKLGNVIKEKLKIDCIHNNAVMEL+RGVR+Q TELISGL QD+APMSLGLSHSL+RYKLKFS+DKVDTMI+QAIGLLDDLDKELNTYAMRVREWYGWHFPEL KI+ DNI YA++VKLMG+RVNAA+LDFSEIL++E+EA+LK+AAVISMGTE+ DLDL +IRELCDQVL+LSEYRAQLYDYLKSRMNTIAPNLTA+VGELVGARLI+HGGSLLNL+KQPGSTVQILGAEKALFRALKTKHATPKYGLI+HASL+GQAA K KGKISRSLAAKT LAIR DALGD QDNTMGLENRAKLEARLRNLEGK+LGR +GS+KGKPKIE Y+KD+K G+GGLITPAKTYN +ADS++G+ Sbjct: 2 VLVLYETAAGFALFKVKDEGKMANVEDLCKEFDTPDSARKMVKLKAFEKFDNTSEALEAVAKLLEGAPSKGLRKFLKANCQGETLAVADSKLGNVIKEKLKIDCIHNNAVMELLRGVRSQFTELISGLGDQDLAPMSLGLSHSLARYKLKFSSDKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIISDNILYAKSVKLMGNRVNAAKLDFSEILADEIEADLKDAAVISMGTEVSDLDLLHIRELCDQVLSLSEYRAQLYDYLKSRMNTIAPNLTALVGELVGARLISHGGSLLNLSKQPGSTVQILGAEKALFRALKTKHATPKYGLIFHASLVGQAAPKHKGKISRSLAAKTVLAIRVDALGDSQDNTMGLENRAKLEARLRNLEGKDLGRLSGSSKGKPKIEVYNKDKKMGSGGLITPAKTYNTAADSLLGE 446
BLAST of LR48_mrnaVigan08g175000 vs. DB:Swiss
Match: NOP5A_ARATH (Probable nucleolar protein 5-1 OS=Arabidopsis thaliana OX=3702 GN=NOP5-1 PE=1 SV=2) HSP 1 Score: 724.161 bits (1868), Expect = 0.000e+0 Identity = 361/443 (81.49%), Postives = 409/443 (92.33%), Query Frame = 1 Query: 1 MLVLFETPAGFALFKVLDEGKLSKVEDLWKDFSSADTARQVVKLKAFSKFENTSEALEAATLLIDGKASKGLRKFLRVHCENETLGVADSKLGNVIKEKLKIDCIHNNAVMELMRGVRNQLTELISGLAVQDMAPMSLGLSHSLSRYKLKFSADKVDTMIVQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVQDNIQYARAVKLMGDRVNAAELDFXXXXXXXXXXXXXXXXXXSMGTEIGDLDLANIRELCDQVLALSEYRAQLYDYLKSRMNTIAPNLTAMVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLIGQAAAKFKGKISRSLAAKTALAIRCDALGDGQDNTMGLENRAKLEARLRNLEGKELGRFAGSAKGKPKIEAYDKDRKKGAGGLITPAKTYNASADSVI 1329 ML+LFETP GFA+FKVL+EGKLS VEDL +FS+A AR++VKL AF KF+NT+EALEA L++G SKGLRKFL+ +C ETL VADSKLGN+IKEKLKI C+HNNAVMEL+RG+R+QLTELISGL QD+ PMSLGLSHSL+RYKLKFS+DKVDTMI+QAIGLLDDLDKELNTYAMRVREW+GWHFPEL KIVQDNI YA+AVKLMG+R+NAA+LDFSEIL++E+EAELKEAAVISMGTE+ DLDL +IRELCDQVL+L+EYRAQLYDYLKSRMNTIAPNLTA+VGELVGARLI+HGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLI+HAS++GQAA K KGKISRSLAAK+ LAIRCDALGD QDNTMG+ENR KLEARLR LEGK+LGR +GSAKGKPKIE YDKD+KKG+GGLITPAKTYN +ADS++ Sbjct: 1 MLILFETPGGFAIFKVLNEGKLSNVEDLGNEFSTAKLARKMVKLVAFDKFDNTAEALEAVAKLLEGTPSKGLRKFLKANCVGETLAVADSKLGNIIKEKLKIVCVHNNAVMELLRGIRSQLTELISGLGDQDLGPMSLGLSHSLARYKLKFSSDKVDTMIIQAIGLLDDLDKELNTYAMRVREWFGWHFPELAKIVQDNILYAKAVKLMGNRINAAKLDFSEILADEIEAELKEAAVISMGTEVSDLDLLHIRELCDQVLSLAEYRAQLYDYLKSRMNTIAPNLTALVGELVGARLISHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIFHASVVGQAAPKNKGKISRSLAAKSVLAIRCDALGDSQDNTMGVENRLKLEARLRTLEGKDLGRLSGSAKGKPKIEVYDKDKKKGSGGLITPAKTYNTAADSLL 443
BLAST of LR48_mrnaVigan08g175000 vs. DB:Swiss
Match: NOP58_HUMAN (Nucleolar protein 58 OS=Homo sapiens OX=9606 GN=NOP58 PE=1 SV=1) HSP 1 Score: 508.449 bits (1308), Expect = 3.800e-175 Identity = 270/445 (60.67%), Postives = 334/445 (75.06%), Query Frame = 1 Query: 1 MLVLFETPAGFALFKVLDEGKLSKVEDLWKDFSSADTARQVVKLKAFSKFENTSEALEAATLLIDGKASKGLRKFLRVHCE--NETLGVADSKLGNVIKEKLKIDCIHNNAVMELMRGVRNQLTELISGLAVQDMAPMSLGLSHSLSRYKLKFSADKVDTMIVQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVQDNIQYARAVKLMGDRVNAAELDFXXXXXXXXXXXXXXXXXXSMGTEIGDLDLANIRELCDQVLALSEYRAQLYDYLKSRMNTIAPNLTAMVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLIGQAAAKFKGKISRSLAAKTALAIRCDALGDGQDNTMGLENRAKLEARLRNLEGKELGRFAGSAKGKPKIEAYDKDRKKGAGGLITPAKTYNASADSVI 1329 MLVLFET G+A+FKVL+E KL +V+ LWK+F + + A ++VKLK F KF++T+EAL A T L++GK +K L+K L+ + +E L VAD+KLG VIKEKL + CIH+ V ELMRG+R+Q+ LI G+ ++MA M LGL+HSLSRY+LKFSADKVDTMIVQAI LLDDLDKELN Y MR REWYGWHFPEL KI+ DN+ Y + ++ +GDR N A SE+L EEVEAE+K AA ISMGTE+ + D+ NI LC QV+ +SEYR QLY+YL++RM IAPN+T MVGELVGARLIAH GSLLNLAK STVQILGAEKALFRALK++ TPKYGLIYHASL+GQ + K KGKISR LAAKT LAIR DA G+ + MG+ENRAKLEARLR LE + + + +G+ K K E Y+ + KTY+ S DS + Sbjct: 1 MLVLFETSVGYAIFKVLNEKKLQEVDSLWKEFETPEKANKIVKLKHFEKFQDTAEALAAFTALMEGKINKQLKKVLKKIVKEAHEPLAVADAKLGGVIKEKLNLSCIHSPVVNELMRGIRSQMDGLIPGVEPREMAAMCLGLAHSLSRYRLKFSADKVDTMIVQAISLLDDLDKELNNYIMRCREWYGWHFPELGKIISDNLTYCKCLQKVGDRKNYASAKLSELLPEEVEAEVKAAAEISMGTEVSEEDICNILHLCTQVIEISEYRTQLYEYLQNRMMAIAPNVTVMVGELVGARLIAHAGSLLNLAKHAASTVQILGAEKALFRALKSRRDTPKYGLIYHASLVGQTSPKHKGKISRMLAAKTVLAIRYDAFGEDSSSAMGVENRAKLEARLRTLEDRGIRKISGTGKALAKTEKYEHK---------SEVKTYDPSGDSTL 436
BLAST of LR48_mrnaVigan08g175000 vs. DB:Swiss
Match: NOP58_MACFA (Nucleolar protein 58 OS=Macaca fascicularis OX=9541 GN=NOP58 PE=2 SV=1) HSP 1 Score: 507.679 bits (1306), Expect = 6.922e-175 Identity = 270/445 (60.67%), Postives = 334/445 (75.06%), Query Frame = 1 Query: 1 MLVLFETPAGFALFKVLDEGKLSKVEDLWKDFSSADTARQVVKLKAFSKFENTSEALEAATLLIDGKASKGLRKFLRVHCE--NETLGVADSKLGNVIKEKLKIDCIHNNAVMELMRGVRNQLTELISGLAVQDMAPMSLGLSHSLSRYKLKFSADKVDTMIVQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVQDNIQYARAVKLMGDRVNAAELDFXXXXXXXXXXXXXXXXXXSMGTEIGDLDLANIRELCDQVLALSEYRAQLYDYLKSRMNTIAPNLTAMVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLIGQAAAKFKGKISRSLAAKTALAIRCDALGDGQDNTMGLENRAKLEARLRNLEGKELGRFAGSAKGKPKIEAYDKDRKKGAGGLITPAKTYNASADSVI 1329 MLVLFET G+A+FKVL+E KL +V+ LWK+F + + A ++VKLK F KF++T+EAL A T L++GK +K L+K L+ + +E L VAD+KLG VIKEKL + CIH+ V ELMRG+R+Q+ LI G+ ++MA M LGL+HSLSRY+LKFSADKVDTMIVQAI LLDDLDKELN Y MR REWYGWHFPEL KI+ DN+ Y + ++ +GDR N A SE+L EEVEAE+K AA ISMGTE+ + D+ NI LC QV+ +SEYR QLY+YL++RM IAPN+T MVGELVGARLIAH GSLLNLAK STVQILGAEKALFRALK++ TPKYGLIYHASL+GQ + K KGKISR LAAKT LAIR DA G+ + MG+ENRAKLEARLR LE + + + +G+ K K E Y+ + KTY+ S DS + Sbjct: 1 MLVLFETSVGYAIFKVLNEKKLQEVDSLWKEFETPEKANKIVKLKHFEKFQDTAEALAAFTALMEGKINKQLKKVLKKIVKEAHEPLAVADAKLGGVIKEKLNLSCIHSPVVNELMRGIRSQMDGLIPGVEPREMAAMCLGLAHSLSRYRLKFSADKVDTMIVQAISLLDDLDKELNNYIMRCREWYGWHFPELGKIISDNLTYCKCLQKVGDRKNYASAKLSELLPEEVEAEVKAAAEISMGTEVSEEDICNILHLCTQVIEISEYRTQLYEYLQNRMMAIAPNVTVMVGELVGARLIAHAGSLLNLAKHAASTVQILGAEKALFRALKSRRDTPKYGLIYHASLVGQTSPKHKGKISRMLAAKTVLAIRYDAFGEDSSSAMGVENRAKLEARLRTLEDRGIRKISGTGKALAKTEKYEHK---------SEVKTYDPSGDSTL 436
BLAST of LR48_mrnaVigan08g175000 vs. DB:Swiss
Match: NOP58_MOUSE (Nucleolar protein 58 OS=Mus musculus OX=10090 GN=Nop58 PE=1 SV=1) HSP 1 Score: 507.294 bits (1305), Expect = 1.268e-174 Identity = 271/445 (60.90%), Postives = 335/445 (75.28%), Query Frame = 1 Query: 1 MLVLFETPAGFALFKVLDEGKLSKVEDLWKDFSSADTARQVVKLKAFSKFENTSEALEAATLLIDGKASKGLRKFLRVHCE--NETLGVADSKLGNVIKEKLKIDCIHNNAVMELMRGVRNQLTELISGLAVQDMAPMSLGLSHSLSRYKLKFSADKVDTMIVQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVQDNIQYARAVKLMGDRVNAAELDFXXXXXXXXXXXXXXXXXXSMGTEIGDLDLANIRELCDQVLALSEYRAQLYDYLKSRMNTIAPNLTAMVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLIGQAAAKFKGKISRSLAAKTALAIRCDALGDGQDNTMGLENRAKLEARLRNLEGKELGRFAGSAKGKPKIEAYDKDRKKGAGGLITPAKTYNASADSVI 1329 MLVLFET G+A+FKVL+E KL +V+ LWK+F + + A ++VKLK F KF++T+EAL A T L++GK +K L+K L+ + +E L VAD+KLG VIKEKL + CIH+ V ELMRG+R+Q+ LI G+ ++MA M LGL+HSLSRY+LKFSADKVDTMIVQAI LLDDLDKELN Y MR REWYGWHFPEL KI+ DN+ Y + ++ +GDR N A SE LSEEVEAE+K AA ISMGTE+ + D+ NI LC QV+ +SEYR QLY+YL++RM IAPN+T MVGELVGARLIAH GSLLNLAK STVQILGAEKALFRALK++ TPKYGLIYHASL+GQ++ K KGKISR LAAKT LAIR DA G+ + MG+ENRAKLEARLR LE + + + +G+ K K E Y+ + KTY+ S DS + Sbjct: 1 MLVLFETSVGYAIFKVLNEKKLQEVDSLWKEFETPEKANKIVKLKHFEKFQDTAEALAAFTALMEGKINKQLKKVLKKIVKEAHEPLAVADAKLGGVIKEKLNLSCIHSPVVNELMRGIRSQMDGLIPGVEPREMAAMCLGLAHSLSRYRLKFSADKVDTMIVQAISLLDDLDKELNNYIMRCREWYGWHFPELGKIISDNLTYCKCLQKVGDRKNYASASLSEFLSEEVEAEVKAAAEISMGTEVSEEDICNILHLCTQVIEISEYRTQLYEYLQNRMMAIAPNVTVMVGELVGARLIAHAGSLLNLAKHAASTVQILGAEKALFRALKSRRDTPKYGLIYHASLVGQSSPKHKGKISRMLAAKTVLAIRYDAFGEDSSSAMGIENRAKLEARLRILEDRGIRKISGTGKALAKAEKYEHK---------SEVKTYDPSGDSTL 436
BLAST of LR48_mrnaVigan08g175000 vs. DB:Swiss
Match: NOP58_RAT (Nucleolar protein 58 OS=Rattus norvegicus OX=10116 GN=Nop58 PE=1 SV=1) HSP 1 Score: 504.982 bits (1299), Expect = 8.965e-174 Identity = 271/445 (60.90%), Postives = 333/445 (74.83%), Query Frame = 1 Query: 1 MLVLFETPAGFALFKVLDEGKLSKVEDLWKDFSSADTARQVVKLKAFSKFENTSEALEAATLLIDGKASKGLRKFLRVHCE--NETLGVADSKLGNVIKEKLKIDCIHNNAVMELMRGVRNQLTELISGLAVQDMAPMSLGLSHSLSRYKLKFSADKVDTMIVQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVQDNIQYARAVKLMGDRVNAAELDFXXXXXXXXXXXXXXXXXXSMGTEIGDLDLANIRELCDQVLALSEYRAQLYDYLKSRMNTIAPNLTAMVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLIGQAAAKFKGKISRSLAAKTALAIRCDALGDGQDNTMGLENRAKLEARLRNLEGKELGRFAGSAKGKPKIEAYDKDRKKGAGGLITPAKTYNASADSVI 1329 MLVLFET G+A+FKVL+E KL +V+ LWK+F + + A ++VKLK F KF++T+EAL A T L++GK +K L+K L+ + +E L VAD+KLG VIKEKL + CIH+ V ELMRG+R+Q+ LI G+ ++MA M LGL+HSLSRY+LKFSADKVDTMIVQAI LLDDLDKELN Y MR REWYGWHFPEL KI+ DN+ Y + ++ +GDR N A SE LSEEVEAE+K AA ISMGTE+ + D+ NI LC QV+ +SEYR QLY+YL++RM IAPN+T MVGELVGARLIAH GSLLNLAK STVQILGAEKALFRALK++ TPKYGLIYHASL+GQ + K KGKISR LAAKT LAIR DA G+ + MG ENRAKLEARLR LE + + + +G+ K K E Y+ + KTY+ S DS + Sbjct: 1 MLVLFETSVGYAIFKVLNEKKLQEVDSLWKEFETPEKANKIVKLKHFEKFQDTAEALAAFTALMEGKINKQLKKVLKKIVKEAHEPLAVADAKLGGVIKEKLNLSCIHSPVVNELMRGIRSQMDGLIPGVEPREMAAMCLGLAHSLSRYRLKFSADKVDTMIVQAISLLDDLDKELNNYIMRCREWYGWHFPELGKIISDNLTYCKCLQKVGDRKNYASATLSEFLSEEVEAEVKAAAEISMGTEVSEEDICNILHLCTQVIEISEYRTQLYEYLQNRMMAIAPNVTVMVGELVGARLIAHAGSLLNLAKHAASTVQILGAEKALFRALKSRRDTPKYGLIYHASLVGQTSPKHKGKISRMLAAKTVLAIRYDAFGEDSSSAMGAENRAKLEARLRILEDRGIRKISGTGKALAKAEKYEHK---------SEVKTYDPSGDSTL 436
BLAST of LR48_mrnaVigan08g175000 vs. DB:Swiss
Match: NOP5C_ARATH (Putative nucleolar protein 5-3 OS=Arabidopsis thaliana OX=3702 GN=NOP5-3 PE=3 SV=2) HSP 1 Score: 489.574 bits (1259), Expect = 6.037e-169 Identity = 269/426 (63.15%), Postives = 327/426 (76.76%), Query Frame = 1 Query: 1 MLVLFETPAGFALFKVLDEGKLSKVEDLWKDFSSADTARQVVKLKAFSKFENTSEALEAATLLIDGKASKGLRKFLRVHCEN-ETLGVADSKLGNVIKEKLKIDCIHNNAVMELMRGVRNQLTELISGLAVQDMAPMSLGLSHSLSRYKLKFSADKVDTMIVQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVQDNIQYARAVKLMGDRVNAAELDFXXXXXXXXXXXXXXXXXXSMGTEIGDLDLANIRELCDQVLALSEYRAQLYDYLKSRMNTIAPNLTAMVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLIGQAAAKFKGKISRSLAAKTALAIRCDALGDGQDNTMGLENRAKLEARLRNLEGKELGRFAGSAKGKPKIEAYDKDRKKGA 1275 MLVLFET GFALFKVLDEGKLS VEDL +F SA++AR++ GL KFL+ +C++ E L VAD KLG++I EKL I+C+HN+AVMEL+RGVR+QLTEL+SGL D+AP+SL LSH L+RYKLK ++DKV+TMI+ +I LLDDLDKELNTY V E YG HFPEL IVQDNI YA+ VKLMG+R+NAA LDFSEIL++EVEAELKEA+++S TE+ DLDL +I+ELCDQVL+++E + L D LK++MN IAPNLTA+VGELVGARLI+H GSL NL+K P ST+QILGAEK L++ALKTK ATPKYGLIYHA L+ QAA + KGKI+RSLAAK+ALAIRCDA G+GQDNTMG+E+R KLEARLRNLEG +LG + + E DKD KK A Sbjct: 1 MLVLFETSGGFALFKVLDEGKLSNVEDLGTEFYSAESARRM-----------------------------GLHKFLKNNCDDGEILAVADPKLGDIITEKLDIECVHNDAVMELLRGVRSQLTELLSGLDDNDLAPVSLELSHILARYKLKITSDKVETMIILSISLLDDLDKELNTYTTSVCELYGLHFPELANIVQDNILYAKVVKLMGNRINAATLDFSEILADEVEAELKEASMVSTRTEVSDLDLMHIQELCDQVLSIAEDKTLLCDDLKNKMNKIAPNLTALVGELVGARLISHCGSLWNLSKLPWSTIQILGAEKTLYKALKTKQATPKYGLIYHAPLVRQAAPENKGKIARSLAAKSALAIRCDAFGNGQDNTMGVESRLKLEARLRNLEGGDLG------ACEEEEEVNDKDTKKEA 391
BLAST of LR48_mrnaVigan08g175000 vs. DB:Swiss
Match: NOP58_SCHPO (Nucleolar protein 58 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=nop58 PE=1 SV=1) HSP 1 Score: 465.307 bits (1196), Expect = 1.614e-158 Identity = 254/408 (62.25%), Postives = 312/408 (76.47%), Query Frame = 1 Query: 1 MLVLFETPAGFALFKVLDEGKLSKVEDLWKDFSSADTARQVVKLKAFSKFENTSEALEAATLLIDGKASKGLRKFLR--VHCENETLGVADSKLGNVIKE--KLKIDCIHNNAVMELMRGVRNQLTELISGLAVQDMAPMSLGLSHSLSRYKLKFSADKVDTMIVQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVQDNIQYARAVKLMGDRVNAAELDFXXXXXXXXXXXXXXXXXXSMGTEIGDLDLANIRELCDQVLALSEYRAQLYDYLKSRMNTIAPNLTAMVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLIGQAAAKFKGKISRSLAAKTALAIRCDALGDGQDNT---MGLENRAKLEARLRNLEGKEL 1203 M +L ET AG+A+FK D+ L K + L +D S + A ++KL++F+KFE+T +AL+ + L++GK S L L ++ TL VAD KLGN I + L+ + I +++V +L RG+R L+ LISGLA D+ MSLGLSHSLSR+KLKFS DKVDTMIVQAI LLDDLDKELNTYAMRVREWYGWHFPE+ KI+QDN+ YAR +K MG R +E DFS+IL EE+EA LK AA ISMGTEI + DL NI L DQVL L+ YRAQL +YL++RM IAPNLTA+VGELVGARLIAH GSL+NLAKQP ST+QILGAEKALFRALKTKH+TPKYGLIYHASL+GQA +K KGKI+R LA K AL++R DAL D +D T +GLENR ++E RLR+LEG +L Sbjct: 1 MFILTETAAGYAIFKAKDK-LLKKRDALIEDLKSPEGASNLLKLQSFAKFESTVDALDNVSALVEGKVSSKLSSLLEGLSDSKSSTLVVADPKLGNAINKLPGLEFEIISDSSVQDLYRGIREHLSSLISGLAPSDLNAMSLGLSHSLSRHKLKFSPDKVDTMIVQAIALLDDLDKELNTYAMRVREWYGWHFPEMGKIIQDNLAYARVIKAMGMRTKCSETDFSDILPEEIEATLKSAAEISMGTEITEEDLDNIVMLADQVLELASYRAQLSEYLRNRMQAIAPNLTALVGELVGARLIAHAGSLMNLAKQPASTIQILGAEKALFRALKTKHSTPKYGLIYHASLVGQANSKNKGKIARVLATKAALSLRVDALSD-KDTTNGNIGLENRIRVENRLRSLEGGKL 406
BLAST of LR48_mrnaVigan08g175000 vs. DB:Swiss
Match: NOP58_USTMA (Nucleolar protein 58 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=NOP58 PE=3 SV=1) HSP 1 Score: 454.136 bits (1167), Expect = 4.350e-153 Identity = 253/460 (55.00%), Postives = 320/460 (69.57%), Query Frame = 1 Query: 7 VLFETPAGFALFKVLDEGKLSKVEDLWKDFSSADTARQVVKLKAFSKFENTSEALEAATLLIDGKASKGLRKFLRVHC------ENETLGVADSKLGNVIKEKLKIDCIHNNAVMELMRGVRNQLTELISG------LAVQDMAPMSLGLSHSLSRYKLKFSADKVDTMIVQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVQDNIQYARAVKLMGDRVNAAELDFXXXXXXXXXXXXXXXXXXSMGTEIGDLDLANIRELCDQVLALSEYRAQLYDYLKSRMNTIAPNLTAMVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLIGQAAAKFKGKISRSLAAKTALAIRCDALGDGQDN------TMGLENRAKLEARLRNLE---GKELGRFAGSAKGKPKIEAYDKDRKKGAGGLITPAKTYNASADS 1323 VLFET GF LF V D KL ++L + SA+ A ++KL A +F NT+EA+E + + +GK SK L+KFL E E L VA+SKL + I +KL I +++ +++L RG+R L L+S L +D+ MSLGLSHSLSRYKLKFS DKVDTM+VQAIGLLDDLDKE+N YAMRV+EWYGWHFPE+ KI+ DN+ YA+ ++ MG R NA+ DFSEIL EE+E LK AA ISMGTEI + DL +I LCDQV+++++YR QLY YL++RM IAPNLTA+VG+LVGARLI+H GSL+NLAK P STVQILGAEKALFRALKTKH TPKYGLIYH+SL+GQA K KGK++R +A K AL+IR DAL D T+G+E RAKLE+RLR LE G R A +A G D+ K+ + ++YNA+AD+ Sbjct: 4 VLFETAVGFCLFNVSDSSKLEATKNLHESLDSAEGASNLLKLSAIHRFTNTAEAVEDISAINEGKMSKSLKKFLTDEIVEGKGKEKENLIVAESKLASNIAKKLGIQVTYDSELLDLYRGIRENLATLLSSSSGDESLDPRDLNTMSLGLSHSLSRYKLKFSPDKVDTMVVQAIGLLDDLDKEINIYAMRVKEWYGWHFPEMGKIITDNLAYAKVIRAMGFRTNASATDFSEILPEEIEETLKAAAEISMGTEISETDLEHIWSLCDQVISITQYRTQLYQYLQNRMAAIAPNLTALVGDLVGARLISHAGSLMNLAKHPASTVQILGAEKALFRALKTKHDTPKYGLIYHSSLVGQAPQKLKGKMARMVATKAALSIRLDALADADTKSDEGAPTVGIEARAKLESRLRALEMQSGLSGMRSARNAAG-------DQGHKQKGFQMEAGGRSYNAAADA 456
BLAST of LR48_mrnaVigan08g175000 vs. DB:Swiss
Match: NOP58_CRYNJ (Nucleolar protein 58 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=NOP58 PE=3 SV=1) HSP 1 Score: 446.047 bits (1146), Expect = 3.124e-150 Identity = 245/470 (52.13%), Postives = 315/470 (67.02%), Query Frame = 1 Query: 1 MLVLFETPAGFALFKVLDEGKLSKVEDLWKDFSSADTARQVVKLKAFSKFENTSEALEAATLLIDGKASKGLRKFL--------------RVHCENETLGVADSKLGNVIKEKLKIDCIHNNAVMELMRGVRNQLTELISGLAVQDMAPMSLGLSHSLSRYKLKFSADKVDTMIVQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVQDNIQYARAVKLMGDRVNAAELDFXXXXXXXXXXXXXXXXXXSMGTEIGDLDLANIRELCDQVLALSEYRAQLYDYLKSRMNTIAPNLTAMVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLIGQAAAKFKGKISRSLAAKTALAIRCDALGDGQDNT------MGLENRAKLEARLRNLE---GKELGRFAGSAKG-----KPKIEAYDKDRKKGAGGLITPAKTYNASADSV 1326 MLVL ET GF +FK+ + K+ +DLWK+F + + A + +K++A +F +T+ A+E T + DG+ + L +FL + E L V+D KL I + L I + +++ +L RG+R QL L+ G+ +D+ MSLGL HSLSR+KLKFS DKVDTM++QAI LLDDLDKE+N YAMRV+EWYGWHFPE+ KI+ DNI +AR VK MG R NA DFS +L E++EA LK AA +SMGTEI D D+ +I LCDQV+++SEYR QL +YL++RM IAPNLTA+VGELVGARLI+H GSL+NLAK P STVQILGAEKALFRALKTKH TPKYGLIYHASLIGQA K KGK++R +A K AL+IR DAL D + +G+ NR KLE+RLR LE G + R SA G +P+ E G G +YNA+ D+V Sbjct: 1 MLVLTETSVGFVVFKLSSDAKIDN-KDLWKEFETPEGANKALKVQAIQRFTSTASAVEDLTAVQDGRLTDSLSRFLLDTVGGADDGEKKKKKKKIEEMLVVSDPKLAGTINKALSIPVLSDSSTQDLYRGIRQQLASLLGGVDQKDLNTMSLGLGHSLSRFKLKFSTDKVDTMVIQAIALLDDLDKEINIYAMRVKEWYGWHFPEMAKIIVDNIAFARVVKAMGFRTNAVTTDFSLLLPEDLEATLKSAAELSMGTEISDSDMTHIHSLCDQVISISEYRTQLSEYLRNRMQAIAPNLTALVGELVGARLISHAGSLMNLAKHPASTVQILGAEKALFRALKTKHDTPKYGLIYHASLIGQAPQKLKGKMARMVATKAALSIRVDALSDADSRSDVSAAEVGISNRVKLESRLRALEHQAGIQSVRKVVSANGQQGRQQPRFEM------SGVTG------SYNAATDNV 457 The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan08g175000 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1) Total hits: 10
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan08g175000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g175000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g175000; organism=Vigna angularis; type=mRNA; length=3635bpback to top protein sequence of LR48_mrnaVigan08g175000_Va_Jingnong6_v1.1 >LR48_mrnaVigan08g175000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g175000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g175000_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=551bpback to top mRNA from alignment at Chr_8-CM003378.1:27520852..27524486+ Legend: polypeptidestart_codonexonCDSintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>LR48_mrnaVigan08g175000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g175000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g175000; organism=Vigna angularis; type=mRNA; length=3635bp; location=Sequence derived from: Chr_8-CM003378.1:27520852..27524486+ (Vigna angularisback to top Coding sequence (CDS) from alignment at Chr_8-CM003378.1:27520852..27524486+ >LR48_mrnaVigan08g175000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g175000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g175000; organism=Vigna angularis; type=CDS; length=1656bp; location=Sequence derived from: Chr_8-CM003378.1:27520852..27524486+ (Vigna angularisback to top |