LR48_mrnaVigan08g177900

Transcript Overview


Name	LR48_mrnaVigan08g177900
Unique Name	LR48_mrnaVigan08g177900_Va_Jingnong6_v1.1
Type	mRNA
Organism	Vigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length	1269
Product	hypothetical protein

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr_8-CM003378.1	supercontig	Chr_8-CM003378.1:27842111..27843379 -	Vigna angularis Jingnong 6 genome v1.1	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Vigna angularis Jingnong 6 genome v1.1	2020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.1	2020-05-21
BLAST: V. angularis Jingnong 6 genome v1.1	2020-05-21

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
ascaR119	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ascaR125	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ascaR126	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ascaR147	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ascaR149	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
asasL001	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
asasR074	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
asasR080	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
asasR095	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anasL0088	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anasL0301	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anasL0537	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anasL0814	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anasL1143	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anasL1201	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ascaiR179	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ascaiR180	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
asccR0222	Cajanus cajan Asha genome v1.0	Cajanus cajan
asccR0247	Cajanus cajan Asha genome v1.0	Cajanus cajan
asccR0249	Cajanus cajan Asha genome v1.0	Cajanus cajan
ascrR151	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
ascrR171	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
ascrR187	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
aspsR111	Pisum sativum Cameor genome v1a	Pisum sativum
aspsR128	Pisum sativum Cameor genome v1a	Pisum sativum
aspsR154	Pisum sativum Cameor genome v1a	Pisum sativum
aspsR159	Pisum sativum Cameor genome v1a	Pisum sativum
aspsR165	Pisum sativum Cameor genome v1a	Pisum sativum
aspvR116	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
aspvR130	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
aspvR154	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
aspvR172	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
asvuR093	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
asvuR130	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
asvuR131	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
astifR108	Vicia faba cv. Tiffany genome v1.0	Vicia faba
astifR161	Vicia faba cv. Tiffany genome v1.0	Vicia faba
asvfhR149	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
asvfhR166	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
asvrvR101	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
asvrvR117	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
asvrvR119	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
asvssR117	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
asvssR148	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
asvssR155	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
asvssR160	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
asvssR162	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
asvuaR088	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
asvuaR125	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
asvuaR127	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
ascanR108	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
ascanR111	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
ascanR112	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
ascanR134	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
ascanR136	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum

Orthologs


Gene/Transcript	Assembly	Species
jg42040.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
rna-KK1_021902	Cajanus cajan Asha genome v1.0	Cajanus cajan
Psat2g155480.1	Pisum sativum Cameor genome v1a	Pisum sativum
rna-KK1_019555	Cajanus cajan Asha genome v1.0	Cajanus cajan
Phvul.002G111000.2	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
jg17140.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
Vigun11g181900.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
Ca_18833.1	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
evm.model.Chr09.1083	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
Phvul.009G002400.2	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
rna-TanjilR_05355	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
Ca_15430	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
Cr_20548.1	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
rna-TanjilR_23448	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
Vfaba.Tiffany.R1.6g040840.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
Psat7g138840.1	Pisum sativum Cameor genome v1a	Pisum sativum
Phvul.011G038500.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
rna-XM_004509286.3	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
rna-XM_004507454.3	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
Vfaba.Hedin2.R1.4g114560.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
jg30583.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
Cr_15804.1	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
Vfaba.Hedin2.R1.6g049440.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
Ca_09982	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
rna-KK1_013196	Cajanus cajan Asha genome v1.0	Cajanus cajan
rna-TanjilR_03417	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
Vfaba.Tiffany.R1.1g288000.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
evm.model.Chr11.1697.1.62122c01	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
rna-XM_022781087.1	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
Vigun09g270400.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
rna-XM_027337602.1	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
LR48_mrnaVigan04g248500	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
LR48_mrnaVigan06g051900	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
LR48_mrnaVigan01g179400	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-LR48_Vigan08g177900	gene-LR48_Vigan08g177900_Va_Jingnong6_v1.1	Vigna angularis	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
LR48_mrnaVigan08g177900	LR48_mrnaVigan08g177900_Va_Jingnong6_v1.1-protein	Vigna angularis	polypeptide
LR48_mrnaVigan08g177900_Va_Jingnong6_v1.1	LR48_mrnaVigan08g177900_Va_Jingnong6_v1.1	Vigna angularis	polypeptide

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
LR48_mrnaVigan08g177900_Va_Jingnong6_v1.1-start_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27843377..27843379	LR48_mrnaVigan08g177900_Va_Jingnong6_v1.1-start_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27843377..27843379	Vigna angularis	start_codon

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
LR48_mrnaVigan08g177900_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27843304..27843379	LR48_mrnaVigan08g177900_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27843304..27843379	Vigna angularis	exon
LR48_mrnaVigan08g177900_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27842514..27842799	LR48_mrnaVigan08g177900_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27842514..27842799	Vigna angularis	exon
LR48_mrnaVigan08g177900_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27842111..27842243	LR48_mrnaVigan08g177900_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27842111..27842243	Vigna angularis	exon

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
LR48_mrnaVigan08g177900_Va_Jingnong6_v1.1-intron-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27842800..27843303	LR48_mrnaVigan08g177900_Va_Jingnong6_v1.1-intron-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27842800..27843303	Vigna angularis	intron
LR48_mrnaVigan08g177900_Va_Jingnong6_v1.1-intron-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27842244..27842513	LR48_mrnaVigan08g177900_Va_Jingnong6_v1.1-intron-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27842244..27842513	Vigna angularis	intron

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS7119	CDS7119_Va_Jingnong6_v1.1	Vigna angularis	CDS

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
LR48_mrnaVigan08g177900_Va_Jingnong6_v1.1-stop_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27842111..27842113	LR48_mrnaVigan08g177900_Va_Jingnong6_v1.1-stop_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:27842111..27842113	Vigna angularis	stop_codon

Homology

[Close]

BLAST of LR48_mrnaVigan08g177900 vs. DB:Swiss
Match: VATL_VIGRR (V-type proton ATPase 16 kDa proteolipid subunit OS=Vigna radiata var. radiata OX=3916 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.291e-74
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 1

Query:    1 MASFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 492
            MASFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD
Sbjct:    1 MASFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 164

[Close]

BLAST of LR48_mrnaVigan08g177900 vs. DB:Swiss
Match: VATL5_ARATH (V-type proton ATPase subunit c5 OS=Arabidopsis thaliana OX=3702 GN=VHA-c5 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 3.340e-73
Identity = 161/164 (98.17%), Postives = 164/164 (100.00%), Query Frame = 1

Query:    1 MASFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 492
            M++FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRA+
Sbjct:    1 MSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 164

[Close]

BLAST of LR48_mrnaVigan08g177900 vs. DB:Swiss
Match: VATL3_ARATH (V-type proton ATPase subunit c3 OS=Arabidopsis thaliana OX=3702 GN=VHA-c3 PE=1 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 3.340e-73
Identity = 161/164 (98.17%), Postives = 164/164 (100.00%), Query Frame = 1

Query:    1 MASFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 492
            M++FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRA+
Sbjct:    1 MSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 164

[Close]

BLAST of LR48_mrnaVigan08g177900 vs. DB:Swiss
Match: VATL1_ARATH (V-type proton ATPase subunit c1 OS=Arabidopsis thaliana OX=3702 GN=VHA-c1 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 3.340e-73
Identity = 161/164 (98.17%), Postives = 164/164 (100.00%), Query Frame = 1

Query:    1 MASFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 492
            M++FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRA+
Sbjct:    1 MSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 164

[Close]

BLAST of LR48_mrnaVigan08g177900 vs. DB:Swiss
Match: VATL_KALDA (V-type proton ATPase 16 kDa proteolipid subunit OS=Kalanchoe daigremontiana OX=23013 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 4.589e-73
Identity = 161/163 (98.77%), Postives = 163/163 (100.00%), Query Frame = 1

Query:    4 ASFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 492
            ++FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD
Sbjct:    3 STFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165

[Close]

BLAST of LR48_mrnaVigan08g177900 vs. DB:Swiss
Match: VATL2_ARATH (V-type proton ATPase subunit c2 OS=Arabidopsis thaliana OX=3702 GN=VHA-c2 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 1.565e-72
Identity = 160/163 (98.16%), Postives = 163/163 (100.00%), Query Frame = 1

Query:    4 ASFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 492
            ++FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRA+
Sbjct:    3 STFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165

[Close]

BLAST of LR48_mrnaVigan08g177900 vs. DB:Swiss
Match: VATL_GOSHI (V-type proton ATPase 16 kDa proteolipid subunit OS=Gossypium hirsutum OX=3635 GN=CVA16-2 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 1.617e-72
Identity = 160/163 (98.16%), Postives = 163/163 (100.00%), Query Frame = 1

Query:    4 ASFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 492
            ++FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRA+
Sbjct:    3 STFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165

[Close]

BLAST of LR48_mrnaVigan08g177900 vs. DB:Swiss
Match: VATL_MESCR (V-type proton ATPase 16 kDa proteolipid subunit OS=Mesembryanthemum crystallinum OX=3544 GN=VMAC1 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 3.154e-72
Identity = 160/161 (99.38%), Postives = 161/161 (100.00%), Query Frame = 1

Query:   10 FSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 492
            F+GDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD
Sbjct:    5 FNGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165

[Close]

BLAST of LR48_mrnaVigan08g177900 vs. DB:Swiss
Match: VATL_BETVU (V-type proton ATPase 16 kDa proteolipid subunit OS=Beta vulgaris OX=161934 GN=VMAC1 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 3.154e-72
Identity = 160/161 (99.38%), Postives = 161/161 (100.00%), Query Frame = 1

Query:   10 FSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 492
            F+GDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD
Sbjct:    5 FNGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165

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BLAST of LR48_mrnaVigan08g177900 vs. DB:Swiss
Match: VATL4_ARATH (V-type proton ATPase subunit c4 OS=Arabidopsis thaliana OX=3702 GN=VHA-c4 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 4.527e-72
Identity = 160/161 (99.38%), Postives = 161/161 (100.00%), Query Frame = 1

Query:   10 FSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 492
            FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRA+
Sbjct:    6 FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 166

The following BLAST results are available for this feature:

BLAST of LR48_mrnaVigan08g177900 vs. DB:Swiss

BLAST of LR48_mrnaVigan08g177900 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 10

Position :

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Match Name	E-value	Identity	Description
VATL_VIGRR	1.291e-74	100.00	V-type proton ATPase 16 kDa proteolipid subunit OS...	[more]
VATL5_ARATH	3.340e-73	98.17	V-type proton ATPase subunit c5 OS=Arabidopsis tha...	[more]
VATL3_ARATH	3.340e-73	98.17	V-type proton ATPase subunit c3 OS=Arabidopsis tha...	[more]
VATL1_ARATH	3.340e-73	98.17	V-type proton ATPase subunit c1 OS=Arabidopsis tha...	[more]
VATL_KALDA	4.589e-73	98.77	V-type proton ATPase 16 kDa proteolipid subunit OS...	[more]
VATL2_ARATH	1.565e-72	98.16	V-type proton ATPase subunit c2 OS=Arabidopsis tha...	[more]
VATL_GOSHI	1.617e-72	98.16	V-type proton ATPase 16 kDa proteolipid subunit OS...	[more]
VATL_MESCR	3.154e-72	99.38	V-type proton ATPase 16 kDa proteolipid subunit OS...	[more]
VATL_BETVU	3.154e-72	99.38	V-type proton ATPase 16 kDa proteolipid subunit OS...	[more]
VATL4_ARATH	4.527e-72	99.38	V-type proton ATPase subunit c4 OS=Arabidopsis tha...	[more]

InterPro

Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000245	V-ATPase proteolipid subunit	PRINTS	PR00122	VACATPASE	coord: 29..53 score: 82.74 coord: 55..79 score: 71.05 coord: 106..132 score: 85.77 coord: 133..156 score: 82.68
IPR011555	V-ATPase proteolipid subunit C, eukaryotic	TIGRFAM	TIGR01100	TIGR01100	coord: 12..120 e-value: 7.2E-52 score: 172.2
None	No IPR available	GENE3D	1.20.120.610		coord: 10..161 e-value: 3.3E-60 score: 204.0
None	No IPR available	CDD	cd18176	ATP-synt_Vo_c_ATP6C_rpt2	coord: 88..155 e-value: 7.08606E-31 score: 104.51
None	No IPR available	CDD	cd18175	ATP-synt_Vo_c_ATP6C_rpt1	coord: 12..79 e-value: 4.53912E-31 score: 104.925
IPR002379	V-ATPase proteolipid subunit C-like domain	PFAM	PF00137	ATP-synt_C	coord: 16..75 e-value: 5.6E-14 score: 52.1 coord: 96..154 e-value: 2.9E-20 score: 72.3
IPR035921	F/V-ATP synthase subunit C superfamily	SUPERFAMILY	81333	F1F0 ATP synthase subunit C	coord: 12..76
IPR035921	F/V-ATP synthase subunit C superfamily	SUPERFAMILY	81333	F1F0 ATP synthase subunit C	coord: 86..155

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Chr_8-CM003378.1:27842111..27843379-
coding sequence from alignment at Chr_8-CM003378.1:27842111..27843379-

mRNA sequence

>LR48_mrnaVigan08g177900_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g177900_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g177900; organism=Vigna angularis; type=mRNA; length=1269bp
ATGGCTTCCTTCAGTGGCGATGAGACGGCACCGTTTTTCGGCTTCCTTGG
GGCCGCTGCTGCACTCGTCTTTTCCTGTAATTCAATACCTATTTTTTCAA
TTAGATCTATGTTCGTAGCTGCTACATGATCTCTTTCGAGATTGTATTAG
GAAATTTTATTTTCCTGTGCGCAATTTGATCCCTGCATGAAAGGAAAAAG
GCAAATAGTATATGTTATTGTTGGTTGATTCAGTTATTCTTTGGTAGTTT
CTGCGGTTCAATTGTTTTGTTGGATTCAATTGCGTAGCTGCAAATCGTAG
ATTTATTTTGGCATATAAGGACTGATTTTTTCTTGTAGATATAGGTTGAT
GACTGATACGAATAGTTTTGGTTAGAGTTTTCGTTGCTTTGGTTGGCTCT
CAGTTGACAAAAATAGTCTATTGAAATATCTTCCCGTTGTTTTTATTCTT
GAAATTGATTGGTACAAGAGCTTGAATGTTGTGTATTTAAACATAGAAAG
AGGAATTGTGAGGTTCTTTGTTAGCTCTTCATTCTCTGTAGATTTATCTT
ACTAAGAGTTATTTGAAATGATGGAGGAAGGTATGGGAGCTGCCTATGGC
ACAGCAAAGAGTGGTGTGGGCGTGGCTTCGATGGGTGTGATGAGACCGGA
GCTGGTGATGAAGTCTATTGTTCCTGTTGTTATGGCTGGAGTTTTGGGTA
TTTATGGTCTTATTATTGCTGTTATCATCAGTACTGGCATTAATCCCAAG
GCCAAATCTTATTACCTCTTTGATGGTTATGCACATCTCTCCTCTGGTCT
TGCTTGTGGGCTGGCTGGGCTCTCTGCTGGCATGGCTATTGGTATTGTTG
GTGATGCTGGTGTTAGGTATTATTCTTCTGCCTTGGCATCTCATCTTATG
ATTAATGTGGATACTAATTTGATCACCTTTTTTATTCAACCTGTATTGAT
CATATGCTGAAGTCTATAGATTTCAGGGTGATACTTAATGCAATCGCTAT
GCTTTCAATCAATGGACATCTTATCATGTTATCCTTGATGAAATGTAGAT
TTTGCTGTTAGTTTAATACAGGGATATAGCTTTTATAATGAATCCTATTA
AAATTCTTGCTTTAAATAATTAATCTTCGTCCACAGAGCCAATGCACAGC
AGCCAAAGCTTTTCGTTGGAATGATTCTCATCCTCATCTTTGCTGAAGCT
CTTGCCCTGTATGGTCTCATTGTTGGTATCATCCTGTCTTCTCGTGCTGG
TCAGTCTAGAGCTGATTAA

protein sequence of LR48_mrnaVigan08g177900_Va_Jingnong6_v1.1

>LR48_mrnaVigan08g177900_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g177900_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g177900_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=164bp
MASFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL
VMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLA
CGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIV
GIILSSRAGQSRAD

mRNA from alignment at Chr_8-CM003378.1:27842111..27843379-

Legend: polypeptidestart_codonexonCDSintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>LR48_mrnaVigan08g177900_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g177900_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g177900; organism=Vigna angularis; type=mRNA; length=1269bp; location=Sequence derived from: Chr_8-CM003378.1:27842111..27843379- (Vigna angularis
ATGGCTTCCTTCAGTGGCGATGAGACGGCACCGTTTTTCGGCTTCCTTGG
GGCCGCTGCTGCACTCGTCTTTTCCTGTAATTCAATACCTATTTTTTCAA
TTAGATCTATGTTCGTAGCTGCTACATGATCTCTTTCGAGATTGTATTAG
GAAATTTTATTTTCCTGTGCGCAATTTGATCCCTGCATGAAAGGAAAAAG
GCAAATAGTATATGTTATTGTTGGTTGATTCAGTTATTCTTTGGTAGTTT
CTGCGGTTCAATTGTTTTGTTGGATTCAATTGCGTAGCTGCAAATCGTAG
ATTTATTTTGGCATATAAGGACTGATTTTTTCTTGTAGATATAGGTTGAT
GACTGATACGAATAGTTTTGGTTAGAGTTTTCGTTGCTTTGGTTGGCTCT
CAGTTGACAAAAATAGTCTATTGAAATATCTTCCCGTTGTTTTTATTCTT
GAAATTGATTGGTACAAGAGCTTGAATGTTGTGTATTTAAACATAGAAAG
AGGAATTGTGAGGTTCTTTGTTAGCTCTTCATTCTCTGTAGATTTATCTT
ACTAAGAGTTATTTGAAATGATGGAGGAAGGTATGGGAGCTGCCTATGGC
ACAGCAAAGAGTGGTGTGGGCGTGGCTTCGATGGGTGTGATGAGACCGGA
GCTGGTGATGAAGTCTATTGTTCCTGTTGTTATGGCTGGAGTTTTGGGTA
TTTATGGTCTTATTATTGCTGTTATCATCAGTACTGGCATTAATCCCAAG
GCCAAATCTTATTACCTCTTTGATGGTTATGCACATCTCTCCTCTGGTCT
TGCTTGTGGGCTGGCTGGGCTCTCTGCTGGCATGGCTATTGGTATTGTTG
GTGATGCTGGTGTTAGGTATTATTCTTCTGCCTTGGCATCTCATCTTATG
ATTAATGTGGATACTAATTTGATCACCTTTTTTATTCAACCTGTATTGAT
CATATGCTGAAGTCTATAGATTTCAGGGTGATACTTAATGCAATCGCTAT
GCTTTCAATCAATGGACATCTTATCATGTTATCCTTGATGAAATGTAGAT
TTTGCTGTTAGTTTAATACAGGGATATAGCTTTTATAATGAATCCTATTA
AAATTCTTGCTTTAAATAATTAATCTTCGTCCACAGAGCCAATGCACAGC
AGCCAAAGCTTTTCGTTGGAATGATTCTCATCCTCATCTTTGCTGAAGCT
CTTGCCCTGTATGGTCTCATTGTTGGTATCATCCTGTCTTCTCGTGCTGG
TCAGTCTAGAGCTGATTAA

Coding sequence (CDS) from alignment at Chr_8-CM003378.1:27842111..27843379-

>LR48_mrnaVigan08g177900_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g177900_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g177900; organism=Vigna angularis; type=CDS; length=495bp; location=Sequence derived from: Chr_8-CM003378.1:27842111..27843379- (Vigna angularis
ATGGCTTCCTTCAGTGGCGATGAGACGGCACCGTTTTTCGGCTTCCTTGG
GGCCGCTGCTGCACTCGTCTTTTCCTGTATGGGAGCTGCCTATGGCACAG
CAAAGAGTGGTGTGGGCGTGGCTTCGATGGGTGTGATGAGACCGGAGCTG
GTGATGAAGTCTATTGTTCCTGTTGTTATGGCTGGAGTTTTGGGTATTTA
TGGTCTTATTATTGCTGTTATCATCAGTACTGGCATTAATCCCAAGGCCA
AATCTTATTACCTCTTTGATGGTTATGCACATCTCTCCTCTGGTCTTGCT
TGTGGGCTGGCTGGGCTCTCTGCTGGCATGGCTATTGGTATTGTTGGTGA
TGCTGGTGTTAGAGCCAATGCACAGCAGCCAAAGCTTTTCGTTGGAATGA
TTCTCATCCTCATCTTTGCTGAAGCTCTTGCCCTGTATGGTCTCATTGTT
GGTATCATCCTGTCTTCTCGTGCTGGTCAGTCTAGAGCTGATTAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000245	ATPase_proteolipid_csu
IPR011555	ATPase_proteolipid_su_C_euk
IPR002379	ATPase_proteolipid_c-like_dom
IPR035921	F/V-ATP_Csub_sf

Vocabulary: **Biological Process**
Term	Definition
GO:1902600	proton transmembrane transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0015078	proton transmembrane transporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0033179	proton-transporting V-type ATPase, V0 domain
GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain

Search form

LR48_mrnaVigan08g177900