LR48_mrnaVigan08g187800
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Homology
BLAST of LR48_mrnaVigan08g187800 vs. DB:Swiss
Match: TF3C3_HUMAN (General transcription factor 3C polypeptide 3 OS=Homo sapiens OX=9606 GN=GTF3C3 PE=1 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 3.133e-28 Identity = 82/308 (26.62%), Postives = 153/308 (49.68%), Query Frame = 1 Query: 1642 DWLSDDSDDEPQIENREPPLCILRKY---EEHHQLIIDLCKALASLQRYWEALEIINLSLRLAGTSLSTDKKEELRSLGAQMAYSTTDPKHGFDCVKYIVQQHPHSVAAWNCYYKVISRLENRDTRHYKFVRVIQGKFVDCVPPILISGHQFTIFSHHQDAARKYLEAYKLLPENPLVNLCVGTALINLALGFRLQNKHQCLVQGLAFLYNNLRICENSQESLYNIARAYHHVGLVTLAAVYYEKVIGIREKDCPIPKLPNENPDVIENHKPGYCDLRREAAYNLHLIYKKSGALDLARQVLKDHCTL 2556
D +SD +D E + + +L ++ L++ +L L R+ EA +++ SL K++EL G A + + ++ ++ +V ++ + WN + +V + ++D RH++F + K + +++GH + + A +Y++A++ P+ PL + C+G I++A + +H +VQG +FL L + QES YN+ R H +GL+ LA YY+K + +LP P V+E + DLRR+ AYNL LIY+ SG +A+ +L +C++
Sbjct: 594 DKISDSNDQESANCDAKAIFAVLTSVLTKDDWWNLLLKAIYSLCDLSRFQEAELLVDSSLEYYSFYDDRQKRKELEYFGLSAAILDKNFRKAYNYIRIMVMENVNKPQLWNIFNQVT--MHSQDVRHHRFCLRLMLKNPENHALCVLNGHNAFVSGSFKHALGQYVQAFRTHPDEPLYSFCIGLTFIHMASQKYVLRRHALIVQGFSFLNRYLSLRGPCQESFYNLGRGLHQLGLIHLAIHYYQKAL----------ELP---PLVVEGIELDQLDLRRDIAYNLSLIYQSSGNTGMAQTLLYTYCSI 886 HSP 2 Score: 57.7658 bits (138), Expect = 3.837e-7 Identity = 59/271 (21.77%), Postives = 118/271 (43.54%), Query Frame = 1 Query: 562 LYVELGDYQKAAVTYEQVHQLCYEN-----VEPLKEAAKLYKKCGQVEHAVCILEDYLKSQLDGANASVVDLLCTILMETKAHDRALQYI---------KHAQAANAWEE--------------LPLNLKIKAGICHAHLGKMDMAQVLFNDLKPENASKHVDLVIEVADSLMGLEHYNPALNYYLMLEGNIGNENRNNTLLLLPDDCSAVKYSYSLVAKQDFVSALEILQDDVDARITLASLLLEEGKEDEAISLLSPPNDSDS--GDAN 1284
LY ++GD++ A Y ++ L + ++ ++ AK Y + V A+ I+++ + V++ + + K +D+AL+ I K EE +P+++ +K +C HL ++ L L +N DL ++VA++ + + YN AL +L + +E N ++ L Y A + + +++ +DARI+L++L + G+ ++A+ L P D D+ DAN
Sbjct: 260 LYEQMGDHKMAMDGYRRILNLLSPSDGERFMQLARDMAKSYYEANDVTSAINIIDEAFSKHQGLVSMEDVNIAAELYISNKQYDKALEIITDFSGIVLEKKTSEEGTSEENKAPENVTCTIPDGVPIDITVKLMVCLVHLNILEPLNPLLTTLVEQNPEDMGDLYLDVAEAFLDVGEYNSALP---LLSALVCSERYNLAVVWLRHAECLKALGYMERAAESYGKVVDLAPLHLDARISLSTLQQQLGQPEKALEALEPMYDPDTLAQDAN 527
BLAST of LR48_mrnaVigan08g187800 vs. DB:Swiss
Match: SFC4_SCHPO (Transcription factor tau subunit sfc4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sfc4 PE=1 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 1.296e-14 Identity = 56/162 (34.57%), Postives = 81/162 (50.00%), Query Frame = 1 Query: 2065 ILISGHQFTIFSHHQDAARKYLEAYKLLPENPLVNLCVGTALINLALGFRLQNKHQCLVQGLAFLYN--NLRICEN---SQESLYNIARAYHHVGLVTLAAVYYEKVIGIREKDCPIPKLPNENPDVIENHKPGYCDLRREAAYNLHLIYKKSGALDLARQV 2535
+L+ GH A Y A+ + P+ P+ NL +G A ++ A+ N+H ++QG FLY +LR+ E QE+LYN+ +AYH +GL A YYE V+G+ P + E+ D EAAYNL LIY SG + LA Q+
Sbjct: 844 VLLYGHIMARNRSWIPAINYYSRAFAINPDCPITNLSLGLAYLHRAMQRLSDNRHYQILQGFTFLYRYYDLRVNEGLGEKQEALYNLGKAYHFIGLEHYAVKYYEAVLGLS------PMSQGDKMTSSESTVSTTYDFGFEAAYNLRLIYICSGNIKLAFQI 999
BLAST of LR48_mrnaVigan08g187800 vs. DB:Swiss
Match: TFC4_YEAST (Transcription factor tau 131 kDa subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TFC4 PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.362e-10 Identity = 42/143 (29.37%), Postives = 78/143 (54.55%), Query Frame = 1 Query: 2146 LPENPLVNLCVGTALINLALGFRLQNKHQCLVQGLAFLYNNLRICEN------SQESLYNIARAYHHVGLVTLAAVYYEKVIGIREKDCPIPKLPNENPDVIENHKPGYCDLRREAAYNLHLIYKKSGALDLARQVLKDHCTL 2556
+P++P+VNL +G + I+ A+ +H + GL +LY +I ++ QE+ YN+ RA+H +GLV++A YY + V+EN+ G L++ AAYN +IY++SG ++LA +++ + ++
Sbjct: 905 IPDDPMVNLLMGLSHIHRAMQRLTAQRHFQIFHGLRYLYRYHKIRKSLYTDLEKQEADYNLGRAFHLIGLVSIAIEYYNR--------------------VLENYDDG--KLKKHAAYNSIIIYQQSGNVELADHLMEKYLSI 1025 The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan08g187800 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1) Total hits: 3 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan08g187800_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g187800_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g187800; organism=Vigna angularis; type=mRNA; length=10528bpback to top protein sequence of LR48_mrnaVigan08g187800_Va_Jingnong6_v1.1 >LR48_mrnaVigan08g187800_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g187800_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g187800_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=852bpback to top mRNA from alignment at Chr_8-CM003378.1:28495200..28505727+ Legend: polypeptidestart_codonexonCDSintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>LR48_mrnaVigan08g187800_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g187800_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g187800; organism=Vigna angularis; type=mRNA; length=10528bp; location=Sequence derived from: Chr_8-CM003378.1:28495200..28505727+ (Vigna angularisback to top Coding sequence (CDS) from alignment at Chr_8-CM003378.1:28495200..28505727+ >LR48_mrnaVigan08g187800_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g187800_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g187800; organism=Vigna angularis; type=CDS; length=2559bp; location=Sequence derived from: Chr_8-CM003378.1:28495200..28505727+ (Vigna angularisback to top |