LR48_mrnaVigan08g193300
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Homology
BLAST of LR48_mrnaVigan08g193300 vs. DB:Swiss
Match: SCL23_ARATH (Scarecrow-like protein 23 OS=Arabidopsis thaliana OX=3702 GN=SCL23 PE=1 SV=1) HSP 1 Score: 522.702 bits (1345), Expect = 0.000e+0 Identity = 280/421 (66.51%), Postives = 324/421 (76.96%), Query Frame = 1 Query: 52 MKTKRPVDTADSPADQPSF--KRTNFSADTATEDDQAFDPQPHAGESTXXXXXXXXXQCAECVAMDKLDFANDLLPEIAELSSPFGTSPERVGAYFAQALQARVVSSCL-GSYSPLTAKSVTLTQSQRIFNAFQSYNSVSPLVKFSHFTANQAIFQALEGEDRVHIIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGSSSELLDSTGRRLADFASSLGLPFEFHPVEGKIGSVTELSQLGVRANEAIVVHWMHHCLYDITGSDLGTLRLLTQLRPKLITTVEQDLSH--AGSFLARFVEALHYYSALFDALGDGLGADSLERHTVEQQLLGCEIRNIVAVGGPKRTGEVKVERWADELKRAGFRPVSLRGNPAAQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLIASAW--QPSD 1293
M TKR +D +D PS +R F +T D A +KLL LLLQCAE VA D L A+ LL EI+E+ SPFG+SPERV AYFAQALQ RV+SS L G+ SPL+ K +T+ QSQ+IF+A Q+YNSVSPL+KFSHFTANQAIFQAL+GED VHIIDLD+MQGLQWP LFHILASR +K+RS+RITGFGSSS+LL STGRRLADFASSL LPFEFHP+EG IG++ + SQL R EA+VVHWM H LYD+TG++L TL +L +L+P LIT VEQ+LS+ GSFL RFVEALHYYSALFDALGDGLG +S ER TVEQ +LG EIRNIVA GG +R K +W +EL R GFRPVSLRGNPA QA LLLGM PW GYTLVEENG+L+LGWKDLSLL ASAW QP D
Sbjct: 1 MTTKR-IDRDLPSSDDPSSAKRRIEFPEETLENDGAA-----------AIKLLSLLLQCAEYVATDHLREASTLLSEISEICSPFGSSPERVVAYFAQALQTRVISSYLSGACSPLSEKPLTVVQSQKIFSALQTYNSVSPLIKFSHFTANQAIFQALDGEDSVHIIDLDVMQGLQWPALFHILASRPRKLRSIRITGFGSSSDLLASTGRRLADFASSLNLPFEFHPIEGIIGNLIDPSQLATRQGEAVVVHWMQHRLYDVTGNNLETLEILRRLKPNLITVVEQELSYDDGGSFLGRFVEALHYYSALFDALGDGLGEESGERFTVEQIVLGTEIRNIVAHGGGRR----KRMKWKEELSRVGFRPVSLRGNPATQAGLLLGMLPWNGYTLVEENGTLRLGWKDLSLLTASAWKSQPFD 405
BLAST of LR48_mrnaVigan08g193300 vs. DB:Swiss
Match: SCR_ARATH (Protein SCARECROW OS=Arabidopsis thaliana OX=3702 GN=SCR PE=1 SV=1) HSP 1 Score: 467.233 bits (1201), Expect = 4.245e-159 Identity = 223/357 (62.46%), Postives = 281/357 (78.71%), Query Frame = 1 Query: 217 QCAECVAMDKLDFANDLLPEIAELSSPFGTSPERVGAYFAQALQARVVSSCLGSYSPLTAKSVTLTQSQRIFNAFQSYNSVSPLVKFSHFTANQAIFQALEGEDRVHIIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGSSSELLDSTGRRLADFASSLGLPFEFHPVEGKIGSVTELSQLGVRANEAIVVHWMHHCLYDITGSDLGTLRLLTQLRPKLITTVEQDLSHAGSFLARFVEALHYYSALFDALGDGLGADSLERHTVEQQLLGCEIRNIVAVGGPKRTGEVKVERWADELKRAGFRPVSLRGNPAAQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLIASAWQP 1287
QCAE V+ D L+ AN LL EI++LS+P+GTS +RV AYF++A+ AR+++SCLG Y+ L ++ + T S ++ +AFQ +N +SPLVKFSHFTANQAI +A E ED VHIIDLDIMQGLQWPGLFHILASR +R+TG G+S E L +TG+RL+DFA LGLPFEF P+ K+G++ + +L VR EA+ VHW+ H LYD+TGSD TL LL +L PK++T VEQDLSHAGSFL RFVEA+HYYSALFD+LG G +S ERH VEQQLL EIRN++AVGGP R+GEVK E W +++++ GF+ +SL GN A QA+LLLGMFP GYTLV++NG+LKLGWKDLSLL ASAW P
Sbjct: 296 QCAEAVSADNLEEANKLLLEISQLSTPYGTSAQRVAAYFSEAMSARLLNSCLGIYAALPSRWMPQTHSLKMVSAFQVFNGISPLVKFSHFTANQAIQEAFEKEDSVHIIDLDIMQGLQWPGLFHILASRPGGPPHVRLTGLGTSMEALQATGKRLSDFADKLGLPFEFCPLAEKVGNL-DTERLNVRKREAVAVHWLQHSLYDVTGSDAHTLWLLQRLAPKVVTVVEQDLSHAGSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLSKEIRNVLAVGGPSRSGEVKFESWREKMQQCGFKGISLAGNAATQATLLLGMFPSDGYTLVDDNGTLKLGWKDLSLLTASAWTP 651
BLAST of LR48_mrnaVigan08g193300 vs. DB:Swiss
Match: SCR_PEA (Protein SCARECROW OS=Pisum sativum OX=3888 GN=SCR PE=2 SV=1) HSP 1 Score: 469.159 bits (1206), Expect = 9.485e-158 Identity = 225/357 (63.03%), Postives = 281/357 (78.71%), Query Frame = 1 Query: 217 QCAECVAMDKLDFANDLLPEIAELSSPFGTSPERVGAYFAQALQARVVSSCLGSYSPLTAKSVTLTQSQRIFNAFQSYNSVSPLVKFSHFTANQAIFQALEGEDRVHIIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGSSSELLDSTGRRLADFASSLGLPFEFHPVEGKIGSVTELSQLGVRANEAIVVHWMHHCLYDITGSDLGTLRLLTQLRPKLITTVEQDLSHAGSFLARFVEALHYYSALFDALGDGLGADSLERHTVEQQLLGCEIRNIVAVGGPKRTGEVKVERWADELKRAGFRPVSLRGNPAAQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLIASAWQP 1287
QCAE V+ + L+ AN +L EI++LS+PFGTS +RV AYF++A+ AR+VSSCLG Y+ L S T +Q++ +AFQ +N +SP VKFSHFTANQAI +A E E+RVHIIDLDIMQGLQWPGLFHILASR +R+TG G+S E L++TG+RL+DFA+ LGLPFEF PV K+G++ ++ +L V +EA+ VHW+ H LYD+TGSD TL LL +L PK++T VEQDLS+AGSFL RFVEA+HYYSALFD+LG G +S ERH VEQQLL EIRN++AVGGP R+GE+K W ++L++ GFR VSL GN A QASLLLGMFP GYTLVE+NG LKLGWKDL LL ASAW+P
Sbjct: 453 QCAEAVSAENLEQANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPVSSHT-PHNQKVASAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMETLEATGKRLSDFANKLGLPFEFFPVAEKVGNI-DVEKLNVSKSEAVAVHWLQHSLYDVTGSDTNTLWLLQRLAPKVVTVVEQDLSNAGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIRNVLAVGGPSRSGEIKFHNWREKLQQCGFRGVSLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWRP 807
BLAST of LR48_mrnaVigan08g193300 vs. DB:Swiss
Match: SCR_IPONI (Protein SCARECROW OS=Ipomoea nil OX=35883 GN=SCR PE=1 SV=1) HSP 1 Score: 464.537 bits (1194), Expect = 2.234e-156 Identity = 224/360 (62.22%), Postives = 280/360 (77.78%), Query Frame = 1 Query: 217 QCAECVAMDKLDFANDLLPEIAELSSPFGTSPERVGAYFAQALQARVVSSCLGSYSPLTAKSVTLTQSQRIFNAFQSYNSVSPLVKFSHFTANQAIFQALEGEDRVHIIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGSSSELLDSTGRRLADFASSLGLPFEFHPVEGKIGSVTELSQLGVRANEAIVVHWMHHCLYDITGSDLGTLRLLTQLRPKLITTVEQDLSHAGSFLARFVEALHYYSALFDALGDGLGADSLERHTVEQQLLGCEIRNIVAVGGPKRTGEVKVERWADELKRAGFRPVSLRGNPAAQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLIASAWQPSDL 1296
QCAE VA D LD AN +L +++ELS+P+GTS +RV AYF++A+ AR+V+SCLG Y+ ++ L+ +Q++ +AFQ +N +SP VKFSHFTANQAI +A E EDRVHIIDLDIMQGLQWPGLFHILASR +R+TG G+S E L++TG+RL+DFA LGLPFEF PV K+G++ + +L V EA+ VHW+ H LYD+TGSD TL LL +L PK++T VEQDLSHAGSFL RFVEA+HYYSALFD+LG G +S ERH VEQQLL EIRN++AVGGP R+GEVK W ++ +++GFR VSL GN AAQA+LLLGMF GYTL E+NG+LKLGWKDL LL ASAW+P L
Sbjct: 423 QCAEAVAADNLDEANRMLLQVSELSTPYGTSAQRVAAYFSEAMSARLVNSCLGIYASAPLNALPLSLNQKMASAFQVFNGISPFVKFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPLVRLTGLGTSMEALEATGKRLSDFAQKLGLPFEFFPVADKVGNL-DPQRLNVNKREAVAVHWLQHSLYDVTGSDTNTLWLLQRLAPKVVTVVEQDLSHAGSFLGRFVEAIHYYSALFDSLGACYGEESEERHAVEQQLLSREIRNVLAVGGPSRSGEVKFNNWREKFQQSGFRGVSLAGNAAAQATLLLGMFHSDGYTLAEDNGALKLGWKDLCLLTASAWRPPPL 781
BLAST of LR48_mrnaVigan08g193300 vs. DB:Swiss
Match: SCR1_ORYSJ (Protein SCARECROW 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SCR1 PE=1 SV=1) HSP 1 Score: 452.981 bits (1164), Expect = 1.858e-153 Identity = 227/358 (63.41%), Postives = 274/358 (76.54%), Query Frame = 1 Query: 217 QCAECVAMDKLDFANDLLPEIAELSSPFGTSPERVGAYFAQALQARVVSSCLGSYSPLTAKSVTLTQSQ-RIFNAFQSYNSVSPLVKFSHFTANQAIFQALEGEDRVHIIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGSSSELLDSTGRRLADFASSLGLPFEFHPVEGKIGSVTELSQLGVRANEAIVVHWMHHCLYDITGSDLGTLRLLTQLRPKLITTVEQDLSHAGSFLARFVEALHYYSALFDALGDGLGADSLERHTVEQQLLGCEIRNIVAVGGPKRTGEVKVERWADELKRAGFRPVSLRGNPAAQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLIASAWQP 1287
QCAE V D LD A+ L EIAEL++PFGTS +RV AYFA+A+ AR+VSSCLG Y+PL S + R+ AFQ +N +SP VKFSHFTANQAI +A E E+RVHIIDLDIMQGLQWPGLFHILASR +R+TG G+S E L++TG+RL+DFA +LGLPFEF PV K G++ + +LGV EA+ VHW+ H LYD+TGSD TL L+ +L PK++T VEQDLSH+GSFLARFVEA+HYYSALFD+L DS ERH VEQQLL EIRN++AVGGP RTG+VK W ++L ++GFR SL G+ AAQA LLLGMFP GYTL+EENG+LKLGWKDL LL ASAW+P
Sbjct: 289 QCAESVNADNLDEAHRALLEIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLPNPSPAAARLHGRVAAAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGASMEALEATGKRLSDFADTLGLPFEFCPVADKAGNL-DPEKLGVTRREAVAVHWLRHSLYDVTGSDSNTLWLIQRLAPKVVTMVEQDLSHSGSFLARFVEAIHYYSALFDSLDASYSEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVKFGSWREKLAQSGFRVSSLAGSAAAQAVLLLGMFPSDGYTLIEENGALKLGWKDLCLLTASAWRP 645
BLAST of LR48_mrnaVigan08g193300 vs. DB:Swiss
Match: SCR_MAIZE (Protein SCARECROW OS=Zea mays OX=4577 GN=SCR PE=2 SV=1) HSP 1 Score: 443.351 bits (1139), Expect = 1.524e-149 Identity = 231/358 (64.53%), Postives = 276/358 (77.09%), Query Frame = 1 Query: 217 QCAECVAMDKLDFANDLLPEIAELSSPFGTSPERVGAYFAQALQARVVSSCLGSYSPLTAKSVTLTQSQ-RIFNAFQSYNSVSPLVKFSHFTANQAIFQALEGEDRVHIIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGSSSELLDSTGRRLADFASSLGLPFEFHPVEGKIGSVTELSQLGVRANEAIVVHWMHHCLYDITGSDLGTLRLLTQLRPKLITTVEQDLSHAGSFLARFVEALHYYSALFDALGDGLGADSLERHTVEQQLLGCEIRNIVAVGGPKRTGEVKVERWADELKRAGFRPVSLRGNPAAQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLIASAWQP 1287
QCAE V D LD A+ L EIAEL++PFGTS +RV AYFA+A+ AR+VSSCLG Y+PL S + R+ AFQ +N +SP VKFSHFTANQAI +A E E+RVHIIDLDIMQGLQWPGLFHILASR +R+TG G+S E L++TG+RL+DFA +LGLPFEF V K G+V + +LGV EA+ VHW+HH LYD+TGSD TL L+ +L PK++T VEQDLSH+GSFLARFVEA+HYYSALFD+L G DS ERH VEQQLL EIRN++AVGGP RTG+VK W ++L ++GFR SL G+ AAQASLLLGMFP GYTLVEENG+LKLGWKDL LL ASAW+P
Sbjct: 305 QCAEAVNADNLDDAHQTLLEIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLPPGSPAAARLHGRVAAAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGASMEALEATGKRLSDFADTLGLPFEFCAVAEKAGNV-DPEKLGVTRREAVAVHWLHHSLYDVTGSDSNTLWLIQRLAPKVVTMVEQDLSHSGSFLARFVEAIHYYSALFDSLDASYGEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVKFGSWREKLAQSGFRAASLAGSAAAQASLLLGMFPSDGYTLVEENGALKLGWKDLCLLTASAWRP 661
BLAST of LR48_mrnaVigan08g193300 vs. DB:Swiss
Match: SCR2_ORYSJ (Protein SCARECROW 2 OS=Oryza sativa subsp. japonica OX=39947 GN=SCR2 PE=2 SV=1) HSP 1 Score: 431.795 bits (1109), Expect = 4.422e-145 Identity = 227/358 (63.41%), Postives = 276/358 (77.09%), Query Frame = 1 Query: 217 QCAECVAMDKLDFANDLLPEIAELSSPFGTSPERVGAYFAQALQARVVSSCLGSYSPLTAKSVTLTQSQ-RIFNAFQSYNSVSPLVKFSHFTANQAIFQALEGEDRVHIIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGSSSELLDSTGRRLADFASSLGLPFEFHPVEGKIGSVTELSQLGVRANEAIVVHWMHHCLYDITGSDLGTLRLLTQLRPKLITTVEQDLSHAGSFLARFVEALHYYSALFDALGDGLGADSLERHTVEQQLLGCEIRNIVAVGGPKRTGEVKVERWADELKRAGFRPVSLRGNPAAQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLIASAWQP 1287
QCAE V D LD A+ L EIAEL++PFGTS +RV AYFA+A+ AR+VSSCLG Y+PL + S + R+ AFQ +N +SP VKFSHFTANQAI +A E E+RVHIIDLDIMQGLQWPGLFHILASR +R+TG G+S E L++TG+RL+DFA +LGLPFEF PV K G++ + +LGV EA+ VHW+ H LYD+TGSD TL L+ +L PK++T VEQDLSH+GSFLARFVEA+HYYSALFD+L DS ERH VEQQLL EIRN++AVGGP RTG+VK W ++L ++GFR SL G+ AAQA+LLLGMFP GYTL+EENG+LKLGWKDL LL ASAW+P
Sbjct: 298 QCAESVNADNLDEAHRALLEIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLPSPSPAGARVHGRVAAAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGASMEALEATGKRLSDFADTLGLPFEFCPVADKAGNL-DPEKLGVTRREAVAVHWLRHSLYDVTGSDSNTLWLIQRLAPKVVTMVEQDLSHSGSFLARFVEAIHYYSALFDSLDASYSEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVKFGSWREKLAQSGFRVSSLAGSAAAQAALLLGMFPSDGYTLIEENGALKLGWKDLCLLTASAWRP 654
BLAST of LR48_mrnaVigan08g193300 vs. DB:Swiss
Match: SCR2_ORYSI (Protein SCARECROW 2 OS=Oryza sativa subsp. indica OX=39946 GN=SCR2 PE=3 SV=2) HSP 1 Score: 431.795 bits (1109), Expect = 4.422e-145 Identity = 227/358 (63.41%), Postives = 276/358 (77.09%), Query Frame = 1 Query: 217 QCAECVAMDKLDFANDLLPEIAELSSPFGTSPERVGAYFAQALQARVVSSCLGSYSPLTAKSVTLTQSQ-RIFNAFQSYNSVSPLVKFSHFTANQAIFQALEGEDRVHIIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGSSSELLDSTGRRLADFASSLGLPFEFHPVEGKIGSVTELSQLGVRANEAIVVHWMHHCLYDITGSDLGTLRLLTQLRPKLITTVEQDLSHAGSFLARFVEALHYYSALFDALGDGLGADSLERHTVEQQLLGCEIRNIVAVGGPKRTGEVKVERWADELKRAGFRPVSLRGNPAAQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLIASAWQP 1287
QCAE V D LD A+ L EIAEL++PFGTS +RV AYFA+A+ AR+VSSCLG Y+PL + S + R+ AFQ +N +SP VKFSHFTANQAI +A E E+RVHIIDLDIMQGLQWPGLFHILASR +R+TG G+S E L++TG+RL+DFA +LGLPFEF PV K G++ + +LGV EA+ VHW+ H LYD+TGSD TL L+ +L PK++T VEQDLSH+GSFLARFVEA+HYYSALFD+L DS ERH VEQQLL EIRN++AVGGP RTG+VK W ++L ++GFR SL G+ AAQA+LLLGMFP GYTL+EENG+LKLGWKDL LL ASAW+P
Sbjct: 298 QCAESVNADNLDEAHRALLEIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLPSPSPAGARVHGRVAAAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGASMEALEATGKRLSDFADTLGLPFEFCPVADKAGNL-DPEKLGVTRREAVAVHWLRHSLYDVTGSDSNTLWLIQRLAPKVVTMVEQDLSHSGSFLARFVEAIHYYSALFDSLDASYSEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVKFGSWREKLAQSGFRVSSLAGSAAAQAALLLGMFPSDGYTLIEENGALKLGWKDLCLLTASAWRP 654
BLAST of LR48_mrnaVigan08g193300 vs. DB:Swiss
Match: SCR1_ORYSI (Protein SCARECROW 1 OS=Oryza sativa subsp. indica OX=39946 GN=SCR1 PE=3 SV=2) HSP 1 Score: 430.639 bits (1106), Expect = 1.066e-144 Identity = 227/358 (63.41%), Postives = 275/358 (76.82%), Query Frame = 1 Query: 217 QCAECVAMDKLDFANDLLPEIAELSSPFGTSPERVGAYFAQALQARVVSSCLGSYSPLTAKSVTLTQSQ-RIFNAFQSYNSVSPLVKFSHFTANQAIFQALEGEDRVHIIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGSSSELLDSTGRRLADFASSLGLPFEFHPVEGKIGSVTELSQLGVRANEAIVVHWMHHCLYDITGSDLGTLRLLTQLRPKLITTVEQDLSHAGSFLARFVEALHYYSALFDALGDGLGADSLERHTVEQQLLGCEIRNIVAVGGPKRTGEVKVERWADELKRAGFRPVSLRGNPAAQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLIASAWQP 1287
QCAE V D LD A+ L EIAEL++PFGTS +RV AYFA+A+ AR+VSSCLG Y+PL S + R+ AFQ +N +SP VKFSHFTANQAI +A E E+RVHIIDLDIMQGLQWPGLFHILASR +R+TG G+S E L++TG+RL+DFA +LGLPFEF PV K G++ + +LGV EA+ VHW+ H LYD+TGSD TL L+ +L PK++T VEQDLSH+GSFLARFVEA+HYYSALFD+L DS ERH VEQQLL EIRN++AVGGP RTG+VK W ++L ++GFR SL G+ AAQA+LLLGMFP GYTL+EENG+LKLGWKDL LL ASAW+P
Sbjct: 297 QCAESVNADNLDEAHRALLEIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLPNPSPAAARLHGRVAAAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGASMEALEATGKRLSDFADTLGLPFEFCPVADKAGNL-DPEKLGVTRREAVAVHWLRHSLYDVTGSDSNTLWLIQRLAPKVVTMVEQDLSHSGSFLARFVEAIHYYSALFDSLDASYSEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVKFGSWREKLAQSGFRVSSLAGSAAAQAALLLGMFPSDGYTLIEENGALKLGWKDLCLLTASAWRP 653
BLAST of LR48_mrnaVigan08g193300 vs. DB:Swiss
Match: SCL28_ARATH (Scarecrow-like protein 28 OS=Arabidopsis thaliana OX=3702 GN=SCL28 PE=1 SV=1) HSP 1 Score: 204.142 bits (518), Expect = 1.105e-57 Identity = 135/374 (36.10%), Postives = 185/374 (49.47%), Query Frame = 1 Query: 220 CAECVAMDKLDFANDLLPEIAELSSPFGTSP-ERVGAYFAQALQARVVSSCLGSYSPLTAKSVTLTQSQRIFNAFQSYNSVSPLVKFSHFTANQAIFQALEGEDRVHIIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGSSSELLDSTGRRLADFASSLGLPFEFHPVEGKIGSVTELSQLGVRANEAIVVHW---MHHCLYDITGSDLGT-LRLLTQLRPKLITTVEQDLSHAGSFL-ARFVEALHYYSALFDALGDGLGADSLERHTVEQQLLGCEIRNIVAVGGPKRTG-EVKVERWADELKRAGFRPVSLRGNPAAQASLLLGMF--PWRGYTLVEENGS-----------LKLGWKDLSLLIASAW 1281
C + + + N + +L+SP G +P R+ AY+ +AL RV + + T NA + N V+P+ KF HFTAN+ + +A EG++RVHIID DI QGLQWP F LASR +RITG G S L+ TG RL FA ++ L FEFHPV ++ V L L V+ E++ V+ MH LYD TG+ + L L+ P + EQ+ H L R +L YYSA+FDA+ L DSL R VE+ L G EIRNIVA G R V W L++ GFR + + Q+ +LL M+ G+ VE + + L W + L SAW
Sbjct: 281 CLDAIRSRNIAAINHFIARTGDLASPRGRTPMTRLIAYYIEALALRVARMWPHIFHIAPPREFDRTVEDESGNALRFLNQVTPIPKFIHFTANEMLLRAFEGKERVHIIDFDIKQGLQWPSFFQSLASRINPPHHVRITGIGESKLELNETGDRLHGFAEAMNLQFEFHPVVDRLEDV-RLWMLHVKEGESVAVNCVMQMHKTLYDGTGAAIRDFLGLIRSTNPIALVLAEQEAEHNSEQLETRVCNSLKYYSAMFDAIHTNLATDSLMRVKVEEMLFGREIRNIVACEGSHRQERHVGFRHWRRMLEQLGFRSLGVSEREVLQSKMLLRMYGSDNEGFFNVERSDEDNGGEGGRGGGVTLRWSEQPLYTISAW 653 The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan08g193300 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan08g193300_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g193300_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g193300; organism=Vigna angularis; type=mRNA; length=1314bpback to top protein sequence of LR48_mrnaVigan08g193300_Va_Jingnong6_v1.1 >LR48_mrnaVigan08g193300_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g193300_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g193300_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=437bpback to top mRNA from alignment at Chr_8-CM003378.1:28918624..28919937- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>LR48_mrnaVigan08g193300_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g193300_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g193300; organism=Vigna angularis; type=mRNA; length=1314bp; location=Sequence derived from: Chr_8-CM003378.1:28918624..28919937- (Vigna angularisback to top Coding sequence (CDS) from alignment at Chr_8-CM003378.1:28918624..28919937- >LR48_mrnaVigan08g193300_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g193300_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g193300; organism=Vigna angularis; type=CDS; length=1314bp; location=Sequence derived from: Chr_8-CM003378.1:28918624..28919937- (Vigna angularisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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