LR48_mrnaVigan08g193300

Transcript Overview
NameLR48_mrnaVigan08g193300
Unique NameLR48_mrnaVigan08g193300_Va_Jingnong6_v1.1
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length1314
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_8-CM003378.1supercontigChr_8-CM003378.1:28918624..28919937 -Vigna angularis Jingnong 6 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna angularis Jingnong 6 genome v1.12020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.12020-05-21
BLAST: V. angularis Jingnong 6 genome v1.12020-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ascaR139Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anasL0301Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL1143Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL1201Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaiR187Cicer arietinum ICC 4958 genome v2Cicer arietinum
asccR0230Cajanus cajan Asha genome v1.0Cajanus cajan
ascrR164Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
aspsR139Pisum sativum Cameor genome v1aPisum sativum
aspsR145Pisum sativum Cameor genome v1aPisum sativum
aspvR130Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
asvuR093Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
astifR153Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR162Vicia faba cv. Tiffany genome v1.0Vicia faba
asvfhR158Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR163Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvrvR099Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvssR126Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvuaR086Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ascanR124Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Vfaba.Hedin2.R1.6g065160.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-KK1_021687Cajanus cajan Asha genome v1.0Cajanus cajan
Ca_17271.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
rna-XM_014639143.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vigun11g199500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Cr_15628.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
evm.model.Chr11.1816Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Psat7g179040.1Pisum sativum Cameor genome v1aPisum sativum
Ca_11130Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
jg8216.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Tiffany.R1.6g054000.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-XM_004505614.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Phvul.011G024600.2Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-TanjilR_17421Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LR48_Vigan08g193300gene-LR48_Vigan08g193300_Va_Jingnong6_v1.1Vigna angularisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan08g193300LR48_mrnaVigan08g193300_Va_Jingnong6_v1.1-proteinVigna angularispolypeptide
LR48_mrnaVigan08g193300_Va_Jingnong6_v1.1LR48_mrnaVigan08g193300_Va_Jingnong6_v1.1Vigna angularispolypeptide


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan08g193300_Va_Jingnong6_v1.1-start_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:28919935..28919937LR48_mrnaVigan08g193300_Va_Jingnong6_v1.1-start_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:28919935..28919937Vigna angularisstart_codon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan08g193300_Va_Jingnong6_v1.1-CDS-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:28918624..28919937LR48_mrnaVigan08g193300_Va_Jingnong6_v1.1-CDS-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:28918624..28919937Vigna angularisCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan08g193300_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:28918624..28919937LR48_mrnaVigan08g193300_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:28918624..28919937Vigna angularisexon


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan08g193300_Va_Jingnong6_v1.1-stop_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:28918624..28918626LR48_mrnaVigan08g193300_Va_Jingnong6_v1.1-stop_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:28918624..28918626Vigna angularisstop_codon


Homology
BLAST of LR48_mrnaVigan08g193300 vs. DB:Swiss
Match: SCL23_ARATH (Scarecrow-like protein 23 OS=Arabidopsis thaliana OX=3702 GN=SCL23 PE=1 SV=1)

HSP 1 Score: 522.702 bits (1345), Expect = 0.000e+0
Identity = 280/421 (66.51%), Postives = 324/421 (76.96%), Query Frame = 1
Query:   52 MKTKRPVDTADSPADQPSF--KRTNFSADTATEDDQAFDPQPHAGESTXXXXXXXXXQCAECVAMDKLDFANDLLPEIAELSSPFGTSPERVGAYFAQALQARVVSSCL-GSYSPLTAKSVTLTQSQRIFNAFQSYNSVSPLVKFSHFTANQAIFQALEGEDRVHIIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGSSSELLDSTGRRLADFASSLGLPFEFHPVEGKIGSVTELSQLGVRANEAIVVHWMHHCLYDITGSDLGTLRLLTQLRPKLITTVEQDLSH--AGSFLARFVEALHYYSALFDALGDGLGADSLERHTVEQQLLGCEIRNIVAVGGPKRTGEVKVERWADELKRAGFRPVSLRGNPAAQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLIASAW--QPSD 1293
            M TKR +D     +D PS   +R  F  +T   D  A            +KLL LLLQCAE VA D L  A+ LL EI+E+ SPFG+SPERV AYFAQALQ RV+SS L G+ SPL+ K +T+ QSQ+IF+A Q+YNSVSPL+KFSHFTANQAIFQAL+GED VHIIDLD+MQGLQWP LFHILASR +K+RS+RITGFGSSS+LL STGRRLADFASSL LPFEFHP+EG IG++ + SQL  R  EA+VVHWM H LYD+TG++L TL +L +L+P LIT VEQ+LS+   GSFL RFVEALHYYSALFDALGDGLG +S ER TVEQ +LG EIRNIVA GG +R    K  +W +EL R GFRPVSLRGNPA QA LLLGM PW GYTLVEENG+L+LGWKDLSLL ASAW  QP D
Sbjct:    1 MTTKR-IDRDLPSSDDPSSAKRRIEFPEETLENDGAA-----------AIKLLSLLLQCAEYVATDHLREASTLLSEISEICSPFGSSPERVVAYFAQALQTRVISSYLSGACSPLSEKPLTVVQSQKIFSALQTYNSVSPLIKFSHFTANQAIFQALDGEDSVHIIDLDVMQGLQWPALFHILASRPRKLRSIRITGFGSSSDLLASTGRRLADFASSLNLPFEFHPIEGIIGNLIDPSQLATRQGEAVVVHWMQHRLYDVTGNNLETLEILRRLKPNLITVVEQELSYDDGGSFLGRFVEALHYYSALFDALGDGLGEESGERFTVEQIVLGTEIRNIVAHGGGRR----KRMKWKEELSRVGFRPVSLRGNPATQAGLLLGMLPWNGYTLVEENGTLRLGWKDLSLLTASAWKSQPFD 405          
BLAST of LR48_mrnaVigan08g193300 vs. DB:Swiss
Match: SCR_ARATH (Protein SCARECROW OS=Arabidopsis thaliana OX=3702 GN=SCR PE=1 SV=1)

HSP 1 Score: 467.233 bits (1201), Expect = 4.245e-159
Identity = 223/357 (62.46%), Postives = 281/357 (78.71%), Query Frame = 1
Query:  217 QCAECVAMDKLDFANDLLPEIAELSSPFGTSPERVGAYFAQALQARVVSSCLGSYSPLTAKSVTLTQSQRIFNAFQSYNSVSPLVKFSHFTANQAIFQALEGEDRVHIIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGSSSELLDSTGRRLADFASSLGLPFEFHPVEGKIGSVTELSQLGVRANEAIVVHWMHHCLYDITGSDLGTLRLLTQLRPKLITTVEQDLSHAGSFLARFVEALHYYSALFDALGDGLGADSLERHTVEQQLLGCEIRNIVAVGGPKRTGEVKVERWADELKRAGFRPVSLRGNPAAQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLIASAWQP 1287
            QCAE V+ D L+ AN LL EI++LS+P+GTS +RV AYF++A+ AR+++SCLG Y+ L ++ +  T S ++ +AFQ +N +SPLVKFSHFTANQAI +A E ED VHIIDLDIMQGLQWPGLFHILASR      +R+TG G+S E L +TG+RL+DFA  LGLPFEF P+  K+G++ +  +L VR  EA+ VHW+ H LYD+TGSD  TL LL +L PK++T VEQDLSHAGSFL RFVEA+HYYSALFD+LG   G +S ERH VEQQLL  EIRN++AVGGP R+GEVK E W +++++ GF+ +SL GN A QA+LLLGMFP  GYTLV++NG+LKLGWKDLSLL ASAW P
Sbjct:  296 QCAEAVSADNLEEANKLLLEISQLSTPYGTSAQRVAAYFSEAMSARLLNSCLGIYAALPSRWMPQTHSLKMVSAFQVFNGISPLVKFSHFTANQAIQEAFEKEDSVHIIDLDIMQGLQWPGLFHILASRPGGPPHVRLTGLGTSMEALQATGKRLSDFADKLGLPFEFCPLAEKVGNL-DTERLNVRKREAVAVHWLQHSLYDVTGSDAHTLWLLQRLAPKVVTVVEQDLSHAGSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLSKEIRNVLAVGGPSRSGEVKFESWREKMQQCGFKGISLAGNAATQATLLLGMFPSDGYTLVDDNGTLKLGWKDLSLLTASAWTP 651          
BLAST of LR48_mrnaVigan08g193300 vs. DB:Swiss
Match: SCR_PEA (Protein SCARECROW OS=Pisum sativum OX=3888 GN=SCR PE=2 SV=1)

HSP 1 Score: 469.159 bits (1206), Expect = 9.485e-158
Identity = 225/357 (63.03%), Postives = 281/357 (78.71%), Query Frame = 1
Query:  217 QCAECVAMDKLDFANDLLPEIAELSSPFGTSPERVGAYFAQALQARVVSSCLGSYSPLTAKSVTLTQSQRIFNAFQSYNSVSPLVKFSHFTANQAIFQALEGEDRVHIIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGSSSELLDSTGRRLADFASSLGLPFEFHPVEGKIGSVTELSQLGVRANEAIVVHWMHHCLYDITGSDLGTLRLLTQLRPKLITTVEQDLSHAGSFLARFVEALHYYSALFDALGDGLGADSLERHTVEQQLLGCEIRNIVAVGGPKRTGEVKVERWADELKRAGFRPVSLRGNPAAQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLIASAWQP 1287
            QCAE V+ + L+ AN +L EI++LS+PFGTS +RV AYF++A+ AR+VSSCLG Y+ L   S T   +Q++ +AFQ +N +SP VKFSHFTANQAI +A E E+RVHIIDLDIMQGLQWPGLFHILASR      +R+TG G+S E L++TG+RL+DFA+ LGLPFEF PV  K+G++ ++ +L V  +EA+ VHW+ H LYD+TGSD  TL LL +L PK++T VEQDLS+AGSFL RFVEA+HYYSALFD+LG   G +S ERH VEQQLL  EIRN++AVGGP R+GE+K   W ++L++ GFR VSL GN A QASLLLGMFP  GYTLVE+NG LKLGWKDL LL ASAW+P
Sbjct:  453 QCAEAVSAENLEQANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPVSSHT-PHNQKVASAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMETLEATGKRLSDFANKLGLPFEFFPVAEKVGNI-DVEKLNVSKSEAVAVHWLQHSLYDVTGSDTNTLWLLQRLAPKVVTVVEQDLSNAGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIRNVLAVGGPSRSGEIKFHNWREKLQQCGFRGVSLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWRP 807          
BLAST of LR48_mrnaVigan08g193300 vs. DB:Swiss
Match: SCR_IPONI (Protein SCARECROW OS=Ipomoea nil OX=35883 GN=SCR PE=1 SV=1)

HSP 1 Score: 464.537 bits (1194), Expect = 2.234e-156
Identity = 224/360 (62.22%), Postives = 280/360 (77.78%), Query Frame = 1
Query:  217 QCAECVAMDKLDFANDLLPEIAELSSPFGTSPERVGAYFAQALQARVVSSCLGSYSPLTAKSVTLTQSQRIFNAFQSYNSVSPLVKFSHFTANQAIFQALEGEDRVHIIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGSSSELLDSTGRRLADFASSLGLPFEFHPVEGKIGSVTELSQLGVRANEAIVVHWMHHCLYDITGSDLGTLRLLTQLRPKLITTVEQDLSHAGSFLARFVEALHYYSALFDALGDGLGADSLERHTVEQQLLGCEIRNIVAVGGPKRTGEVKVERWADELKRAGFRPVSLRGNPAAQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLIASAWQPSDL 1296
            QCAE VA D LD AN +L +++ELS+P+GTS +RV AYF++A+ AR+V+SCLG Y+     ++ L+ +Q++ +AFQ +N +SP VKFSHFTANQAI +A E EDRVHIIDLDIMQGLQWPGLFHILASR      +R+TG G+S E L++TG+RL+DFA  LGLPFEF PV  K+G++ +  +L V   EA+ VHW+ H LYD+TGSD  TL LL +L PK++T VEQDLSHAGSFL RFVEA+HYYSALFD+LG   G +S ERH VEQQLL  EIRN++AVGGP R+GEVK   W ++ +++GFR VSL GN AAQA+LLLGMF   GYTL E+NG+LKLGWKDL LL ASAW+P  L
Sbjct:  423 QCAEAVAADNLDEANRMLLQVSELSTPYGTSAQRVAAYFSEAMSARLVNSCLGIYASAPLNALPLSLNQKMASAFQVFNGISPFVKFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPLVRLTGLGTSMEALEATGKRLSDFAQKLGLPFEFFPVADKVGNL-DPQRLNVNKREAVAVHWLQHSLYDVTGSDTNTLWLLQRLAPKVVTVVEQDLSHAGSFLGRFVEAIHYYSALFDSLGACYGEESEERHAVEQQLLSREIRNVLAVGGPSRSGEVKFNNWREKFQQSGFRGVSLAGNAAAQATLLLGMFHSDGYTLAEDNGALKLGWKDLCLLTASAWRPPPL 781          
BLAST of LR48_mrnaVigan08g193300 vs. DB:Swiss
Match: SCR1_ORYSJ (Protein SCARECROW 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SCR1 PE=1 SV=1)

HSP 1 Score: 452.981 bits (1164), Expect = 1.858e-153
Identity = 227/358 (63.41%), Postives = 274/358 (76.54%), Query Frame = 1
Query:  217 QCAECVAMDKLDFANDLLPEIAELSSPFGTSPERVGAYFAQALQARVVSSCLGSYSPLTAKSVTLTQSQ-RIFNAFQSYNSVSPLVKFSHFTANQAIFQALEGEDRVHIIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGSSSELLDSTGRRLADFASSLGLPFEFHPVEGKIGSVTELSQLGVRANEAIVVHWMHHCLYDITGSDLGTLRLLTQLRPKLITTVEQDLSHAGSFLARFVEALHYYSALFDALGDGLGADSLERHTVEQQLLGCEIRNIVAVGGPKRTGEVKVERWADELKRAGFRPVSLRGNPAAQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLIASAWQP 1287
            QCAE V  D LD A+  L EIAEL++PFGTS +RV AYFA+A+ AR+VSSCLG Y+PL   S    +   R+  AFQ +N +SP VKFSHFTANQAI +A E E+RVHIIDLDIMQGLQWPGLFHILASR      +R+TG G+S E L++TG+RL+DFA +LGLPFEF PV  K G++ +  +LGV   EA+ VHW+ H LYD+TGSD  TL L+ +L PK++T VEQDLSH+GSFLARFVEA+HYYSALFD+L      DS ERH VEQQLL  EIRN++AVGGP RTG+VK   W ++L ++GFR  SL G+ AAQA LLLGMFP  GYTL+EENG+LKLGWKDL LL ASAW+P
Sbjct:  289 QCAESVNADNLDEAHRALLEIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLPNPSPAAARLHGRVAAAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGASMEALEATGKRLSDFADTLGLPFEFCPVADKAGNL-DPEKLGVTRREAVAVHWLRHSLYDVTGSDSNTLWLIQRLAPKVVTMVEQDLSHSGSFLARFVEAIHYYSALFDSLDASYSEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVKFGSWREKLAQSGFRVSSLAGSAAAQAVLLLGMFPSDGYTLIEENGALKLGWKDLCLLTASAWRP 645          
BLAST of LR48_mrnaVigan08g193300 vs. DB:Swiss
Match: SCR_MAIZE (Protein SCARECROW OS=Zea mays OX=4577 GN=SCR PE=2 SV=1)

HSP 1 Score: 443.351 bits (1139), Expect = 1.524e-149
Identity = 231/358 (64.53%), Postives = 276/358 (77.09%), Query Frame = 1
Query:  217 QCAECVAMDKLDFANDLLPEIAELSSPFGTSPERVGAYFAQALQARVVSSCLGSYSPLTAKSVTLTQSQ-RIFNAFQSYNSVSPLVKFSHFTANQAIFQALEGEDRVHIIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGSSSELLDSTGRRLADFASSLGLPFEFHPVEGKIGSVTELSQLGVRANEAIVVHWMHHCLYDITGSDLGTLRLLTQLRPKLITTVEQDLSHAGSFLARFVEALHYYSALFDALGDGLGADSLERHTVEQQLLGCEIRNIVAVGGPKRTGEVKVERWADELKRAGFRPVSLRGNPAAQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLIASAWQP 1287
            QCAE V  D LD A+  L EIAEL++PFGTS +RV AYFA+A+ AR+VSSCLG Y+PL   S    +   R+  AFQ +N +SP VKFSHFTANQAI +A E E+RVHIIDLDIMQGLQWPGLFHILASR      +R+TG G+S E L++TG+RL+DFA +LGLPFEF  V  K G+V +  +LGV   EA+ VHW+HH LYD+TGSD  TL L+ +L PK++T VEQDLSH+GSFLARFVEA+HYYSALFD+L    G DS ERH VEQQLL  EIRN++AVGGP RTG+VK   W ++L ++GFR  SL G+ AAQASLLLGMFP  GYTLVEENG+LKLGWKDL LL ASAW+P
Sbjct:  305 QCAEAVNADNLDDAHQTLLEIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLPPGSPAAARLHGRVAAAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGASMEALEATGKRLSDFADTLGLPFEFCAVAEKAGNV-DPEKLGVTRREAVAVHWLHHSLYDVTGSDSNTLWLIQRLAPKVVTMVEQDLSHSGSFLARFVEAIHYYSALFDSLDASYGEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVKFGSWREKLAQSGFRAASLAGSAAAQASLLLGMFPSDGYTLVEENGALKLGWKDLCLLTASAWRP 661          
BLAST of LR48_mrnaVigan08g193300 vs. DB:Swiss
Match: SCR2_ORYSJ (Protein SCARECROW 2 OS=Oryza sativa subsp. japonica OX=39947 GN=SCR2 PE=2 SV=1)

HSP 1 Score: 431.795 bits (1109), Expect = 4.422e-145
Identity = 227/358 (63.41%), Postives = 276/358 (77.09%), Query Frame = 1
Query:  217 QCAECVAMDKLDFANDLLPEIAELSSPFGTSPERVGAYFAQALQARVVSSCLGSYSPLTAKSVTLTQSQ-RIFNAFQSYNSVSPLVKFSHFTANQAIFQALEGEDRVHIIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGSSSELLDSTGRRLADFASSLGLPFEFHPVEGKIGSVTELSQLGVRANEAIVVHWMHHCLYDITGSDLGTLRLLTQLRPKLITTVEQDLSHAGSFLARFVEALHYYSALFDALGDGLGADSLERHTVEQQLLGCEIRNIVAVGGPKRTGEVKVERWADELKRAGFRPVSLRGNPAAQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLIASAWQP 1287
            QCAE V  D LD A+  L EIAEL++PFGTS +RV AYFA+A+ AR+VSSCLG Y+PL + S    +   R+  AFQ +N +SP VKFSHFTANQAI +A E E+RVHIIDLDIMQGLQWPGLFHILASR      +R+TG G+S E L++TG+RL+DFA +LGLPFEF PV  K G++ +  +LGV   EA+ VHW+ H LYD+TGSD  TL L+ +L PK++T VEQDLSH+GSFLARFVEA+HYYSALFD+L      DS ERH VEQQLL  EIRN++AVGGP RTG+VK   W ++L ++GFR  SL G+ AAQA+LLLGMFP  GYTL+EENG+LKLGWKDL LL ASAW+P
Sbjct:  298 QCAESVNADNLDEAHRALLEIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLPSPSPAGARVHGRVAAAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGASMEALEATGKRLSDFADTLGLPFEFCPVADKAGNL-DPEKLGVTRREAVAVHWLRHSLYDVTGSDSNTLWLIQRLAPKVVTMVEQDLSHSGSFLARFVEAIHYYSALFDSLDASYSEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVKFGSWREKLAQSGFRVSSLAGSAAAQAALLLGMFPSDGYTLIEENGALKLGWKDLCLLTASAWRP 654          
BLAST of LR48_mrnaVigan08g193300 vs. DB:Swiss
Match: SCR2_ORYSI (Protein SCARECROW 2 OS=Oryza sativa subsp. indica OX=39946 GN=SCR2 PE=3 SV=2)

HSP 1 Score: 431.795 bits (1109), Expect = 4.422e-145
Identity = 227/358 (63.41%), Postives = 276/358 (77.09%), Query Frame = 1
Query:  217 QCAECVAMDKLDFANDLLPEIAELSSPFGTSPERVGAYFAQALQARVVSSCLGSYSPLTAKSVTLTQSQ-RIFNAFQSYNSVSPLVKFSHFTANQAIFQALEGEDRVHIIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGSSSELLDSTGRRLADFASSLGLPFEFHPVEGKIGSVTELSQLGVRANEAIVVHWMHHCLYDITGSDLGTLRLLTQLRPKLITTVEQDLSHAGSFLARFVEALHYYSALFDALGDGLGADSLERHTVEQQLLGCEIRNIVAVGGPKRTGEVKVERWADELKRAGFRPVSLRGNPAAQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLIASAWQP 1287
            QCAE V  D LD A+  L EIAEL++PFGTS +RV AYFA+A+ AR+VSSCLG Y+PL + S    +   R+  AFQ +N +SP VKFSHFTANQAI +A E E+RVHIIDLDIMQGLQWPGLFHILASR      +R+TG G+S E L++TG+RL+DFA +LGLPFEF PV  K G++ +  +LGV   EA+ VHW+ H LYD+TGSD  TL L+ +L PK++T VEQDLSH+GSFLARFVEA+HYYSALFD+L      DS ERH VEQQLL  EIRN++AVGGP RTG+VK   W ++L ++GFR  SL G+ AAQA+LLLGMFP  GYTL+EENG+LKLGWKDL LL ASAW+P
Sbjct:  298 QCAESVNADNLDEAHRALLEIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLPSPSPAGARVHGRVAAAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGASMEALEATGKRLSDFADTLGLPFEFCPVADKAGNL-DPEKLGVTRREAVAVHWLRHSLYDVTGSDSNTLWLIQRLAPKVVTMVEQDLSHSGSFLARFVEAIHYYSALFDSLDASYSEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVKFGSWREKLAQSGFRVSSLAGSAAAQAALLLGMFPSDGYTLIEENGALKLGWKDLCLLTASAWRP 654          
BLAST of LR48_mrnaVigan08g193300 vs. DB:Swiss
Match: SCR1_ORYSI (Protein SCARECROW 1 OS=Oryza sativa subsp. indica OX=39946 GN=SCR1 PE=3 SV=2)

HSP 1 Score: 430.639 bits (1106), Expect = 1.066e-144
Identity = 227/358 (63.41%), Postives = 275/358 (76.82%), Query Frame = 1
Query:  217 QCAECVAMDKLDFANDLLPEIAELSSPFGTSPERVGAYFAQALQARVVSSCLGSYSPLTAKSVTLTQSQ-RIFNAFQSYNSVSPLVKFSHFTANQAIFQALEGEDRVHIIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGSSSELLDSTGRRLADFASSLGLPFEFHPVEGKIGSVTELSQLGVRANEAIVVHWMHHCLYDITGSDLGTLRLLTQLRPKLITTVEQDLSHAGSFLARFVEALHYYSALFDALGDGLGADSLERHTVEQQLLGCEIRNIVAVGGPKRTGEVKVERWADELKRAGFRPVSLRGNPAAQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLIASAWQP 1287
            QCAE V  D LD A+  L EIAEL++PFGTS +RV AYFA+A+ AR+VSSCLG Y+PL   S    +   R+  AFQ +N +SP VKFSHFTANQAI +A E E+RVHIIDLDIMQGLQWPGLFHILASR      +R+TG G+S E L++TG+RL+DFA +LGLPFEF PV  K G++ +  +LGV   EA+ VHW+ H LYD+TGSD  TL L+ +L PK++T VEQDLSH+GSFLARFVEA+HYYSALFD+L      DS ERH VEQQLL  EIRN++AVGGP RTG+VK   W ++L ++GFR  SL G+ AAQA+LLLGMFP  GYTL+EENG+LKLGWKDL LL ASAW+P
Sbjct:  297 QCAESVNADNLDEAHRALLEIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLPNPSPAAARLHGRVAAAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGASMEALEATGKRLSDFADTLGLPFEFCPVADKAGNL-DPEKLGVTRREAVAVHWLRHSLYDVTGSDSNTLWLIQRLAPKVVTMVEQDLSHSGSFLARFVEAIHYYSALFDSLDASYSEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVKFGSWREKLAQSGFRVSSLAGSAAAQAALLLGMFPSDGYTLIEENGALKLGWKDLCLLTASAWRP 653          
BLAST of LR48_mrnaVigan08g193300 vs. DB:Swiss
Match: SCL28_ARATH (Scarecrow-like protein 28 OS=Arabidopsis thaliana OX=3702 GN=SCL28 PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 1.105e-57
Identity = 135/374 (36.10%), Postives = 185/374 (49.47%), Query Frame = 1
Query:  220 CAECVAMDKLDFANDLLPEIAELSSPFGTSP-ERVGAYFAQALQARVVSSCLGSYSPLTAKSVTLTQSQRIFNAFQSYNSVSPLVKFSHFTANQAIFQALEGEDRVHIIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGSSSELLDSTGRRLADFASSLGLPFEFHPVEGKIGSVTELSQLGVRANEAIVVHW---MHHCLYDITGSDLGT-LRLLTQLRPKLITTVEQDLSHAGSFL-ARFVEALHYYSALFDALGDGLGADSLERHTVEQQLLGCEIRNIVAVGGPKRTG-EVKVERWADELKRAGFRPVSLRGNPAAQASLLLGMF--PWRGYTLVEENGS-----------LKLGWKDLSLLIASAW 1281
            C + +    +   N  +    +L+SP G +P  R+ AY+ +AL  RV       +     +    T      NA +  N V+P+ KF HFTAN+ + +A EG++RVHIID DI QGLQWP  F  LASR      +RITG G S   L+ TG RL  FA ++ L FEFHPV  ++  V  L  L V+  E++ V+    MH  LYD TG+ +   L L+    P  +   EQ+  H    L  R   +L YYSA+FDA+   L  DSL R  VE+ L G EIRNIVA  G  R    V    W   L++ GFR + +      Q+ +LL M+     G+  VE +             + L W +  L   SAW
Sbjct:  281 CLDAIRSRNIAAINHFIARTGDLASPRGRTPMTRLIAYYIEALALRVARMWPHIFHIAPPREFDRTVEDESGNALRFLNQVTPIPKFIHFTANEMLLRAFEGKERVHIIDFDIKQGLQWPSFFQSLASRINPPHHVRITGIGESKLELNETGDRLHGFAEAMNLQFEFHPVVDRLEDV-RLWMLHVKEGESVAVNCVMQMHKTLYDGTGAAIRDFLGLIRSTNPIALVLAEQEAEHNSEQLETRVCNSLKYYSAMFDAIHTNLATDSLMRVKVEEMLFGREIRNIVACEGSHRQERHVGFRHWRRMLEQLGFRSLGVSEREVLQSKMLLRMYGSDNEGFFNVERSDEDNGGEGGRGGGVTLRWSEQPLYTISAW 653          
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan08g193300 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 10
Match NameE-valueIdentityDescription
SCL23_ARATH0.000e+066.51Scarecrow-like protein 23 OS=Arabidopsis thaliana ... [more]
SCR_ARATH4.245e-15962.46Protein SCARECROW OS=Arabidopsis thaliana OX=3702 ... [more]
SCR_PEA9.485e-15863.03Protein SCARECROW OS=Pisum sativum OX=3888 GN=SCR ... [more]
SCR_IPONI2.234e-15662.22Protein SCARECROW OS=Ipomoea nil OX=35883 GN=SCR P... [more]
SCR1_ORYSJ1.858e-15363.41Protein SCARECROW 1 OS=Oryza sativa subsp. japonic... [more]
SCR_MAIZE1.524e-14964.53Protein SCARECROW OS=Zea mays OX=4577 GN=SCR PE=2 ... [more]
SCR2_ORYSJ4.422e-14563.41Protein SCARECROW 2 OS=Oryza sativa subsp. japonic... [more]
SCR2_ORYSI4.422e-14563.41Protein SCARECROW 2 OS=Oryza sativa subsp. indica ... [more]
SCR1_ORYSI1.066e-14463.41Protein SCARECROW 1 OS=Oryza sativa subsp. indica ... [more]
SCL28_ARATH1.105e-5736.10Scarecrow-like protein 28 OS=Arabidopsis thaliana ... [more]
back to top
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005202Transcription factor GRASPFAMPF03514GRAScoord: 69..428
e-value: 4.9E-114
score: 381.1
IPR005202Transcription factor GRASPROSITEPS50985GRAScoord: 58..428
score: 84.814
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

Sequences
The following sequences are available for this feature:

mRNA sequence

>LR48_mrnaVigan08g193300_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g193300_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g193300; organism=Vigna angularis; type=mRNA; length=1314bp
ATGCTTCAAAGCTTGGTCCCGCGATCCCCCCGCACTTCCAACCCTAACGA
CATGAAAACTAAGCGACCCGTTGACACCGCTGATTCTCCCGCCGATCAAC
CTTCTTTCAAGCGGACCAACTTCTCCGCCGATACTGCCACCGAGGACGAC
CAGGCCTTCGATCCCCAGCCTCACGCCGGCGAGTCCACCGGCCTCAAACT
TCTAGGCCTCCTCCTCCAATGCGCCGAGTGCGTCGCCATGGATAAACTCG
ACTTCGCCAACGACCTCCTCCCGGAGATCGCCGAACTGTCTTCTCCGTTC
GGTACCTCGCCGGAGCGCGTCGGGGCTTACTTCGCGCAGGCGCTGCAGGC
GCGTGTGGTGAGCTCATGCCTCGGCTCGTACTCTCCGCTGACCGCGAAAT
CTGTAACCCTAACTCAGTCGCAGCGAATCTTCAACGCCTTCCAATCCTAC
AACTCGGTCTCGCCGCTGGTGAAGTTCTCTCACTTCACCGCGAACCAGGC
TATCTTCCAGGCCCTGGAAGGGGAGGATCGCGTCCATATCATCGACCTCG
ATATCATGCAAGGTCTCCAATGGCCGGGATTGTTCCACATCCTTGCCTCT
CGCTCGAAGAAGATCCGCTCCATGAGAATCACCGGATTCGGATCCTCCTC
GGAGCTCCTCGACTCTACCGGGCGGAGACTCGCGGATTTCGCGAGCTCGC
TTGGGCTACCGTTTGAGTTTCACCCGGTGGAGGGGAAAATCGGAAGCGTG
ACCGAACTGAGTCAACTCGGCGTTCGAGCCAACGAGGCGATCGTGGTGCA
CTGGATGCATCATTGCTTGTATGACATAACCGGGAGCGATTTAGGGACGT
TGAGATTGCTGACTCAGCTTAGACCTAAACTGATCACGACCGTCGAGCAG
GACCTGAGCCACGCCGGGAGCTTCCTGGCGCGGTTCGTGGAGGCCTTGCA
TTATTACAGCGCGTTGTTCGACGCGCTCGGGGATGGTTTGGGTGCGGACA
GCCTTGAGAGGCACACGGTGGAGCAGCAGCTTTTGGGCTGCGAGATCAGG
AACATCGTGGCCGTGGGCGGGCCCAAGAGAACCGGTGAGGTTAAGGTGGA
GCGGTGGGCGGATGAGCTGAAACGGGCCGGGTTTCGGCCCGTTTCACTCC
GGGGCAACCCTGCTGCACAAGCCAGTTTGTTGCTGGGAATGTTCCCTTGG
AGAGGTTATACGCTGGTCGAAGAGAATGGTTCCTTGAAGCTTGGTTGGAA
GGACCTTTCTCTGTTGATTGCCTCTGCTTGGCAGCCCTCTGATTTGATTA
CTTACCCCGATTGA
back to top

protein sequence of LR48_mrnaVigan08g193300_Va_Jingnong6_v1.1

>LR48_mrnaVigan08g193300_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g193300_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g193300_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=437bp
MLQSLVPRSPRTSNPNDMKTKRPVDTADSPADQPSFKRTNFSADTATEDD
QAFDPQPHAGESTGLKLLGLLLQCAECVAMDKLDFANDLLPEIAELSSPF
GTSPERVGAYFAQALQARVVSSCLGSYSPLTAKSVTLTQSQRIFNAFQSY
NSVSPLVKFSHFTANQAIFQALEGEDRVHIIDLDIMQGLQWPGLFHILAS
RSKKIRSMRITGFGSSSELLDSTGRRLADFASSLGLPFEFHPVEGKIGSV
TELSQLGVRANEAIVVHWMHHCLYDITGSDLGTLRLLTQLRPKLITTVEQ
DLSHAGSFLARFVEALHYYSALFDALGDGLGADSLERHTVEQQLLGCEIR
NIVAVGGPKRTGEVKVERWADELKRAGFRPVSLRGNPAAQASLLLGMFPW
RGYTLVEENGSLKLGWKDLSLLIASAWQPSDLITYPD
back to top

mRNA from alignment at Chr_8-CM003378.1:28918624..28919937-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan08g193300_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g193300_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g193300; organism=Vigna angularis; type=mRNA; length=1314bp; location=Sequence derived from: Chr_8-CM003378.1:28918624..28919937- (Vigna angularis
ATGCTTCAAAGCTTGGTCCCGCGATCCCCCCGCACTTCCAACCCTAACGA CATGAAAACTAAGCGACCCGTTGACACCGCTGATTCTCCCGCCGATCAAC CTTCTTTCAAGCGGACCAACTTCTCCGCCGATACTGCCACCGAGGACGAC CAGGCCTTCGATCCCCAGCCTCACGCCGGCGAGTCCACCGGCCTCAAACT TCTAGGCCTCCTCCTCCAATGCGCCGAGTGCGTCGCCATGGATAAACTCG ACTTCGCCAACGACCTCCTCCCGGAGATCGCCGAACTGTCTTCTCCGTTC GGTACCTCGCCGGAGCGCGTCGGGGCTTACTTCGCGCAGGCGCTGCAGGC GCGTGTGGTGAGCTCATGCCTCGGCTCGTACTCTCCGCTGACCGCGAAAT CTGTAACCCTAACTCAGTCGCAGCGAATCTTCAACGCCTTCCAATCCTAC AACTCGGTCTCGCCGCTGGTGAAGTTCTCTCACTTCACCGCGAACCAGGC TATCTTCCAGGCCCTGGAAGGGGAGGATCGCGTCCATATCATCGACCTCG ATATCATGCAAGGTCTCCAATGGCCGGGATTGTTCCACATCCTTGCCTCT CGCTCGAAGAAGATCCGCTCCATGAGAATCACCGGATTCGGATCCTCCTC GGAGCTCCTCGACTCTACCGGGCGGAGACTCGCGGATTTCGCGAGCTCGC TTGGGCTACCGTTTGAGTTTCACCCGGTGGAGGGGAAAATCGGAAGCGTG ACCGAACTGAGTCAACTCGGCGTTCGAGCCAACGAGGCGATCGTGGTGCA CTGGATGCATCATTGCTTGTATGACATAACCGGGAGCGATTTAGGGACGT TGAGATTGCTGACTCAGCTTAGACCTAAACTGATCACGACCGTCGAGCAG GACCTGAGCCACGCCGGGAGCTTCCTGGCGCGGTTCGTGGAGGCCTTGCA TTATTACAGCGCGTTGTTCGACGCGCTCGGGGATGGTTTGGGTGCGGACA GCCTTGAGAGGCACACGGTGGAGCAGCAGCTTTTGGGCTGCGAGATCAGG AACATCGTGGCCGTGGGCGGGCCCAAGAGAACCGGTGAGGTTAAGGTGGA GCGGTGGGCGGATGAGCTGAAACGGGCCGGGTTTCGGCCCGTTTCACTCC GGGGCAACCCTGCTGCACAAGCCAGTTTGTTGCTGGGAATGTTCCCTTGG AGAGGTTATACGCTGGTCGAAGAGAATGGTTCCTTGAAGCTTGGTTGGAA GGACCTTTCTCTGTTGATTGCCTCTGCTTGGCAGCCCTCTGATTTGATTA CTTACCCCGATTGA
back to top

Coding sequence (CDS) from alignment at Chr_8-CM003378.1:28918624..28919937-

>LR48_mrnaVigan08g193300_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g193300_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g193300; organism=Vigna angularis; type=CDS; length=1314bp; location=Sequence derived from: Chr_8-CM003378.1:28918624..28919937- (Vigna angularis
ATGCTTCAAAGCTTGGTCCCGCGATCCCCCCGCACTTCCAACCCTAACGA
CATGAAAACTAAGCGACCCGTTGACACCGCTGATTCTCCCGCCGATCAAC
CTTCTTTCAAGCGGACCAACTTCTCCGCCGATACTGCCACCGAGGACGAC
CAGGCCTTCGATCCCCAGCCTCACGCCGGCGAGTCCACCGGCCTCAAACT
TCTAGGCCTCCTCCTCCAATGCGCCGAGTGCGTCGCCATGGATAAACTCG
ACTTCGCCAACGACCTCCTCCCGGAGATCGCCGAACTGTCTTCTCCGTTC
GGTACCTCGCCGGAGCGCGTCGGGGCTTACTTCGCGCAGGCGCTGCAGGC
GCGTGTGGTGAGCTCATGCCTCGGCTCGTACTCTCCGCTGACCGCGAAAT
CTGTAACCCTAACTCAGTCGCAGCGAATCTTCAACGCCTTCCAATCCTAC
AACTCGGTCTCGCCGCTGGTGAAGTTCTCTCACTTCACCGCGAACCAGGC
TATCTTCCAGGCCCTGGAAGGGGAGGATCGCGTCCATATCATCGACCTCG
ATATCATGCAAGGTCTCCAATGGCCGGGATTGTTCCACATCCTTGCCTCT
CGCTCGAAGAAGATCCGCTCCATGAGAATCACCGGATTCGGATCCTCCTC
GGAGCTCCTCGACTCTACCGGGCGGAGACTCGCGGATTTCGCGAGCTCGC
TTGGGCTACCGTTTGAGTTTCACCCGGTGGAGGGGAAAATCGGAAGCGTG
ACCGAACTGAGTCAACTCGGCGTTCGAGCCAACGAGGCGATCGTGGTGCA
CTGGATGCATCATTGCTTGTATGACATAACCGGGAGCGATTTAGGGACGT
TGAGATTGCTGACTCAGCTTAGACCTAAACTGATCACGACCGTCGAGCAG
GACCTGAGCCACGCCGGGAGCTTCCTGGCGCGGTTCGTGGAGGCCTTGCA
TTATTACAGCGCGTTGTTCGACGCGCTCGGGGATGGTTTGGGTGCGGACA
GCCTTGAGAGGCACACGGTGGAGCAGCAGCTTTTGGGCTGCGAGATCAGG
AACATCGTGGCCGTGGGCGGGCCCAAGAGAACCGGTGAGGTTAAGGTGGA
GCGGTGGGCGGATGAGCTGAAACGGGCCGGGTTTCGGCCCGTTTCACTCC
GGGGCAACCCTGCTGCACAAGCCAGTTTGTTGCTGGGAATGTTCCCTTGG
AGAGGTTATACGCTGGTCGAAGAGAATGGTTCCTTGAAGCTTGGTTGGAA
GGACCTTTCTCTGTTGATTGCCTCTGCTTGGCAGCCCTCTGATTTGATTA
CTTACCCCGATTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR005202TF_GRAS