LR48_mrnaVigan08g197000
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Homology
BLAST of LR48_mrnaVigan08g197000 vs. DB:Swiss
Match: TKPR1_ARATH (Tetraketide alpha-pyrone reductase 1 OS=Arabidopsis thaliana OX=3702 GN=TKPR1 PE=1 SV=1) HSP 1 Score: 277.715 bits (709), Expect = 5.119e-91 Identity = 149/327 (45.57%), Postives = 206/327 (63.00%), Query Frame = 1 Query: 1 MNETRGKVVCVTGASGFIASWIVKFLLQRGYTVRATVRDKGNPKKVSHLANLEGAKERLHLFKADLLEEGSFDSVVEGCHAVFHTASPVRFVVNNPQAELIDPAVKGTLNVLKSCAKSPSVKRVVLTSSISAVAFTGKPKSPEVVVDETWFSDPDFCRESEFWYTLSKTLAEEAAWKFVNENNIDMIVINPTMVAGPLLQAEINESVEPILNLING---KPFLNRSFGWVNVKDVANAHILAYEIASASGRYCLSERVIHYSELARTLRDLYPTFQIPDKCEVDEPYMPTYQISTDKAKKDFGIEFTPLEVSVRETVESFREKKIIN 972 M++ +GKV CVTGASGF+ASW+VK LL GY V TVRD GN KK++HL LEGAKERL L KADL+EEGSFD+ + GC VFHTASPV +NP+ E++ PA++GTLNVL+SC K+PS+KRVVLTSS S V P++ +DE+ ++ + C+ + WY LSKTLAE+AAWKF EN ID++ + P+ + GP L ++ + +L L+ G K + G+V++ DVA HI+ +E +A GRY S VI EL L YP+ IP + E + Y T K + G++F LE + + S E+ ++ Sbjct: 1 MDQAKGKV-CVTGASGFLASWLVKRLLLEGYEVIGTVRDPGNEKKLAHLWKLEGAKERLRLVKADLMEEGSFDNAIMGCQGVFHTASPVLKPTSNPEEEILRPAIEGTLNVLRSCRKNPSLKRVVLTSSSSTVRIRDD-FDPKIPLDESIWTSVELCKRFQVWYALSKTLAEQAAWKFSEENGIDLVTVLPSFLVGPSLPPDLCSTASDVLGLLKGETEKFQWHGQMGYVHIDDVARTHIVVFEHEAAQGRYICSSNVISLEELVSFLSARYPSLPIPKRFE--KLNRLHYDFDTSKI-QSLGLKFKSLEEMFDDCIASLVEQGYLS 322
BLAST of LR48_mrnaVigan08g197000 vs. DB:Swiss
Match: CCR1_ARATH (Cinnamoyl-CoA reductase 1 OS=Arabidopsis thaliana OX=3702 GN=CCR1 PE=1 SV=1) HSP 1 Score: 258.07 bits (658), Expect = 4.569e-83 Identity = 147/318 (46.23%), Postives = 210/318 (66.04%), Query Frame = 1 Query: 16 GKVVCVTGASGFIASWIVKFLLQRGYTVRATVRDKGNPKKVSHLANLEGAKERLHLFKADLLEEGSFDSVVEGCHAVFHTASPVRFVVNNPQAELIDPAVKGTLNVLKSCAKSPSVKRVVLTSSISAVAFTGKPKSPEVVVDETWFSDPDFCRESEFWYTLSKTLAEEAAWKFVNENNIDMIVINPTMVAGPLLQAEINESVEPILNLING--KPFLNRSFGWVNVKDVANAHILAYEIASASGRYCLSERVIHYSELARTLRDLYPTFQIPDKCEVDE-PYMPTYQISTDKAKKDFGIEFTPLEVSVRETVESFREK 960 GK VCVTGA G+IASWIVK LL+RGYTV+ TVR+ +PK +HL LEG KERL L KADL + + + ++GC VFHTASPV ++P+ ++++PAV G V+ + A++ VKRVV+TSSI AV + + PE VVDE+ +SD DFC+ ++ WY K +AE+AAW+ E +D++V+NP +V GP LQ IN S+ +L + G K + N + +V+V+DVA AH+L YE SASGRY L+E H E+ L L+P + +P KC+ ++ P Y+ + K KD G+EFT + S+ +TV+S +EK Sbjct: 10 GKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKN-THLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFHTASPV---TDDPE-QMVEPAVNGAKFVINAAAEA-KVKRVVITSSIGAV-YMDPNRDPEAVVDESCWSDLDFCKNTKNWYCYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPLQPTINASLYHVLKYLTGSAKTYANLTQAYVDVRDVALAHVLVYEAPSASGRYLLAESARHRGEVVEILAKLFPEYPLPTKCKDEKNPRAKPYKFTNQKI-KDLGLEFTSTKQSLYDTVKSLQEK 319
BLAST of LR48_mrnaVigan08g197000 vs. DB:Swiss
Match: CCR2_ARATH (Cinnamoyl-CoA reductase 2 OS=Arabidopsis thaliana OX=3702 GN=CCR2 PE=1 SV=1) HSP 1 Score: 253.447 bits (646), Expect = 2.213e-81 Identity = 144/318 (45.28%), Postives = 208/318 (65.41%), Query Frame = 1 Query: 16 GKVVCVTGASGFIASWIVKFLLQRGYTVRATVRDKGNPKKVSHLANLEGAKERLHLFKADLLEEGSFDSVVEGCHAVFHTASPVRFVVNNPQAELIDPAVKGTLNVLKSCAKSPSVKRVVLTSSISAVAFTGKPKSPEVVVDETWFSDPDFCRESEFWYTLSKTLAEEAAWKFVNENNIDMIVINPTMVAGPLLQAEINESVEPILNLING--KPFLNRSFGWVNVKDVANAHILAYEIASASGRYCLSERVIHYSELARTLRDLYPTFQIPDKCEVDE-PYMPTYQISTDKAKKDFGIEFTPLEVSVRETVESFREK 960 GK+VCVTGA G+IASWIVK LL+RGYTVR TVR+ +PK +HL L+GAKERL L ADLL+ + + ++GC VFHTASP+ ++P+ +++PAV G V+ + AK+ VKRVV TSSI AV + + + +VDE +SD DFC+ ++ WY K LAE++AW+ +D++V+NP +V GP LQ+ IN S+ IL + G K + N + +V+V+DVA H+L YE SASGRY L+E +H E+ L +P + +P KC ++ P Y+ +T K KD G+EF P++ S+ E+V+S +EK Sbjct: 5 GKLVCVTGAGGYIASWIVKLLLERGYTVRGTVRNPTDPKN-NHLRELQGAKERLTLHSADLLDYEALCATIDGCDGVFHTASPM---TDDPET-MLEPAVNGAKFVIDAAAKA-KVKRVVFTSSIGAV-YMNPNRDTQAIVDENCWSDLDFCKNTKNWYCYGKMLAEQSAWETAKAKGVDLVVLNPVLVLGPPLQSAINASLVHILKYLTGSAKTYANLTQVYVDVRDVALGHVLVYEAPSASGRYILAETALHRGEVVEILAKFFPEYPLPTKCSDEKNPRAKPYKFTTQKI-KDLGLEFKPIKQSLYESVKSLQEK 314
BLAST of LR48_mrnaVigan08g197000 vs. DB:Swiss
Match: CCR1_ORYSJ (Cinnamoyl-CoA reductase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CCR1 PE=1 SV=1) HSP 1 Score: 241.506 bits (615), Expect = 1.022e-76 Identity = 136/317 (42.90%), Postives = 191/317 (60.25%), Query Frame = 1 Query: 19 KVVCVTGASGFIASWIVKFLLQRGYTVRATVRDKGNPKKVSHLANLEGAKERLHLFKADLLEEGSFDSVVEGCHAVFHTASPVRFVVNNPQAELIDPAVKGTLNVLKSCAKSPSVKRVVLTSSISAVAFTGKPKSPEVVVDETWFSDPDFCRESEFWYTLSKTLAEEAAWKFVNENNIDMIVINPTMVAGPLLQAEINESVEPILNLING--KPFLNRSFGWVNVKDVANAHILAYEIASASGRYCLSERVIHYSELARTLRDLYPTFQIPDKCEVD-EPYMPTYQISTDKAKKDFGIEFTPLEVSVRETVESFREK 960 ++VCVTGA GFI SW+VK LL RGY VR T RD + K +HL LEGA ERL L +AD+L+ S + GCH VFH ASPV N+P +L+ AV+GT NV+ + A V+RVV TSS AV +SP+ V+DET +SD +FC++++ Y +K +AE A + + +++ V+ P+M GP+LQ +N S + + G K + N +V+V+DVA AH+L YE A GRY V+H +EL R LR+L+P + KCE D +P Y+ S + K D G+EFTPL S+ E V ++K Sbjct: 16 QLVCVTGAGGFIGSWVVKELLIRGYHVRGTARDPADSKN-AHLLELEGADERLSLCRADVLDAASLRAAFSGCHGVFHVASPVS---NDP--DLVPVAVEGTRNVINAAADM-GVRRVVFTSSYGAVHMNPN-RSPDAVLDETCWSDYEFCKQTDNLYCCAKMMAEMTATEEAAKRGLELAVVVPSMTMGPMLQQTLNFSTNHVARYLMGTKKSYPNAVAAYVDVRDVARAHVLVYERPEARGRYLCIGTVLHRAELLRMLRELFPRYPATAKCEDDGKPMAKPYKFSNQRLK-DLGLEFTPLRKSLNEAVLCMQQK 323
BLAST of LR48_mrnaVigan08g197000 vs. DB:Swiss
Match: DFRA_VITVI (Dihydroflavonol 4-reductase OS=Vitis vinifera OX=29760 GN=DFR PE=1 SV=1) HSP 1 Score: 235.343 bits (599), Expect = 3.093e-74 Identity = 137/327 (41.90%), Postives = 196/327 (59.94%), Query Frame = 1 Query: 10 TRGKVVCVTGASGFIASWIVKFLLQRGYTVRATVRDKGNPKKVSHLANLEGAKERLHLFKADLLEEGSFDSVVEGCHAVFHTASPVRFVVNNPQAELIDPAVKGTLNVLKSCAKSPSVKRVVLTSSISAVAFTGKPKSPEVVVDETWFSDPDFCRESEF--W-YTLSKTLAEEAAWKFVNENNIDMIVINPTMVAGPLLQAEINESVEPILNLINGKPF---LNRSFGWVNVKDVANAHILAYEIASASGRYCLSERVIHYSELARTLRDLYPTFQIPDKCEVDEPYMPTYQISTDKAKKDFGIEFT-PLEVSVRETVESFREKKII 969 ++ + VCVTGASGFI SW+V LL+R TVRATVRD N KKV HL +L A+ L L+KADL +EGSFD ++GC VFH A+P+ F +P+ E+I P ++G L ++KSCA + +V+R+V TSS V + + P V DE+ +SD +FCR + W Y +SKTLAE+AAWK+ ENNID I I PT+V GP + + + S+ L+ I G + R +V++ D+ NAHI +E A GRY S +LA+ LR+ YP + IP + + + + + S+ K D G EF LE V++ R K ++ Sbjct: 3 SQSETVCVTGASGFIGSWLVMRLLERRLTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQ-EHQLP--VYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIYLFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKGVDENLKSVCFSSKKL-TDLGFEFKYSLEDMFTGAVDTCRAKGLL 325
BLAST of LR48_mrnaVigan08g197000 vs. DB:Swiss
Match: DFRA_MALDO (Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Malus domestica OX=3750 GN=DFR PE=1 SV=1) HSP 1 Score: 234.572 bits (597), Expect = 6.961e-74 Identity = 137/324 (42.28%), Postives = 191/324 (58.95%), Query Frame = 1 Query: 25 VCVTGASGFIASWIVKFLLQRGYTVRATVRDKGNPKKVSHLANLEGAKERLHLFKADLLEEGSFDSVVEGCHAVFHTASPVRFVVNNPQAELIDPAVKGTLNVLKSCAKSPSVKRVVLTSSISAVAFTGKPKSPEVVVDETWFSDPDFCRE---SEFWYTLSKTLAEEAAWKFVNENNIDMIVINPTMVAGPLLQAEINES----VEPILNLINGKPFLNRSFGWVNVKDVANAHILAYEIASASGRYCLSERVIHYSELARTLRDLYPTFQIPDKCE-VDEPYMPTYQISTDKAKKDFGIEFT-PLEVSVRETVESFREKKII 969 VCVTGASGFI SW+V LL+ GYTVRATVRD N KKV HL +L A+ L L+KADL +EGSFD ++GC VFH A+P+ F +P+ E+I P + G L++LK+C K+ +V+++V TSS V K V DE+ +SD +FCR + + Y +SKTLAE+AAWK+ ENNID I I PT+V GP L + S + PIL + + + +V++ D+ +HI YE A GRY S EL + LR+ YP + IP K + +D+ P + + K ++ G EF LE V++ R K +I Sbjct: 8 VCVTGASGFIGSWLVMRLLEHGYTVRATVRDPTNQKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIQGCSGVFHVATPMDFESKDPENEVIKPTINGLLDILKACQKAKTVRKLVFTSSAGTVNVEEHQKP---VYDESNWSDVEFCRSVKMTGWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVIGPFLMPSMPPSLITGLSPILRNESHYGIIKQG-QYVHLDDLCLSHIYLYEHPKAEGRYICSSHDATIHELVKMLREKYPEYNIPTKFKGIDDNLEPVH--FSSKKLREIGFEFKYSLEDMFVGAVDACRAKGLI 325
BLAST of LR48_mrnaVigan08g197000 vs. DB:Swiss
Match: DFRA_PYRCO (Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Pyrus communis OX=23211 GN=DFR PE=1 SV=1) HSP 1 Score: 233.032 bits (593), Expect = 2.665e-73 Identity = 136/324 (41.98%), Postives = 191/324 (58.95%), Query Frame = 1 Query: 25 VCVTGASGFIASWIVKFLLQRGYTVRATVRDKGNPKKVSHLANLEGAKERLHLFKADLLEEGSFDSVVEGCHAVFHTASPVRFVVNNPQAELIDPAVKGTLNVLKSCAKSPSVKRVVLTSSISAVAFTGKPKSPEVVVDETWFSDPDFCRE---SEFWYTLSKTLAEEAAWKFVNENNIDMIVINPTMVAGPLLQAEINES----VEPILNLINGKPFLNRSFGWVNVKDVANAHILAYEIASASGRYCLSERVIHYSELARTLRDLYPTFQIPDKCE-VDEPYMPTYQISTDKAKKDFGIEFT-PLEVSVRETVESFREKKII 969 VCVTGASGFI SW+V LL+ GYTVRATVRD N KKV HL +L A+ L L+KADL +EGSFD ++GC VFH A+P+ F +P+ E+I P + G L++LK+C K+ +V+++V TSS V K V DE+ +SD +FCR + + Y +SKTLAE+AAWK+ ENNID I I PT+V GP L + S + PIL + + + +V++ D+ +HI Y+ A GRY S EL + LR+ YP + IP K + +D+ P + + K ++ G EF LE V++ R K +I Sbjct: 8 VCVTGASGFIGSWLVMRLLEHGYTVRATVRDPTNQKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIQGCSGVFHVATPMDFESRDPENEVIKPTINGLLDILKACQKAKTVRKLVFTSSAGTVNVEEHQKP---VYDESNWSDVEFCRSVKMTGWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVIGPFLMPSMPPSLITGLSPILRNESHYGIIKQG-QYVHLDDLCLSHIYLYKHPKAEGRYICSSHDATIHELVKMLREKYPEYNIPTKFKGIDDNLEPVH--FSSKKLREIGFEFKYSLEDMFVGAVDACRAKGLI 325
BLAST of LR48_mrnaVigan08g197000 vs. DB:Swiss
Match: TKPR2_ARATH (Tetraketide alpha-pyrone reductase 2 OS=Arabidopsis thaliana OX=3702 GN=TKPR2 PE=1 SV=1) HSP 1 Score: 230.335 bits (586), Expect = 1.529e-72 Identity = 131/320 (40.94%), Postives = 191/320 (59.69%), Query Frame = 1 Query: 31 VTGASGFIASWIVKFLLQRGYTVRATVRDKGNPKKVSHLANLEGAKERLHLFKADLLEEGSFDSVVEGCHAVFHTASPVRFVVN-NPQAELIDPAVKGTLNVLKSCAKS-PSVKRVVLTSSISAV--AFTGKPKSPEVVVDETWFSDPDFCRESEFWYTLSKTLAEEAAWKFVNENNIDMIVINPTMVAGPLLQAEINESVEPILNLING--KPFLNRSFGWVNVKDVANAHILAYEIASASGRYCLSERVIHYSELARTLRDLYPTFQIPDKCEVDEPYMPTYQISTDKAKK-DFGIEFTPLEVSVRETVESFREKKII 969 VTG +GFIAS+I+K LL+ G+TVR TVR+ + +KV L +GAK+RL + +ADL EGSFD V G VFHTASPV + N Q L+DP +KGT NV+ SCAKS ++KR+VLTSS S++ F SP ++E+ +SDP++C+ WY +KTL E AW+ E +D++V+NP+ V GPLL + ++ IL + G + N + G+V++ DV AH+LA E ASGR S V H+SE+ +R+ YP + +KC E + + T K + FG F L + + SF++K ++ Sbjct: 6 VTGGTGFIASYIIKSLLELGHTVRTTVRNPRDEEKVGFLWEFQGAKQRLKILQADLTVEGSFDEAVNGVDGVFHTASPVLVPQDHNIQETLVDPIIKGTTNVMSSCAKSKATLKRIVLTSSCSSIRYRFDATEASP---LNESHWSDPEYCKRFNLWYGYAKTLGEREAWRIAEEKGLDLVVVNPSFVVGPLLGPKPTSTLLMILAIAKGLAGEYPNFTVGFVHIDDVVAAHVLAMEEPKASGRIICSSSVAHWSEIIELMRNKYPNYPFENKCSNKEGDNSPHSMDTRKIHELGFG-SFKSLPEMFDDCIISFQKKGLL 321
BLAST of LR48_mrnaVigan08g197000 vs. DB:Swiss
Match: DFRA_GERHY (Dihydroflavonol 4-reductase OS=Gerbera hybrida OX=18101 GN=DFR PE=2 SV=1) HSP 1 Score: 231.491 bits (589), Expect = 1.743e-72 Identity = 133/332 (40.06%), Postives = 192/332 (57.83%), Query Frame = 1 Query: 1 MNETRGKVVCVTGASGFIASWIVKFLLQRGYTVRATVRDKGNPKKVSHLANLEGAKERLHLFKADLLEEGSFDSVVEGCHAVFHTASPVRFVVNNPQAELIDPAVKGTLNVLKSCAKSPSVKRVVLTSSISAVAFTGKPKSPEVVVDETWFSDPDFC---RESEFWYTLSKTLAEEAAWKFVNENNIDMIVINPTMVAGPLLQAEINESVEPILNLINGKPF---LNRSFGWVNVKDVANAHILAYEIASASGRYCLSERVIHYSELARTLRDLYPTFQIPDKCEVDEPYMPTYQISTDKAKKDFGIEFT-PLEVSVRETVESFREKKIINF 975 M E VCVTGA+GFI SW+V LL+RGY V ATVRD G+ KKV HL L A+ L L+KADL +EGSFD ++GCH VFH A+P+ F +P+ E+I P ++G L++++SC K+ +VK++V TSS V G+ K V DE+ +SD DF + + + Y +SKTLAE+AAW NNI I I PT+V GP + + S+ L+LI G + + +V++ D+ HI YE A GRY S +LA+ ++D +P + IP K + +P S+ K D G EF LE + +++ REK ++ + Sbjct: 1 MEEDSPATVCVTGAAGFIGSWLVMRLLERGYVVHATVRDPGDLKKVKHLLELPKAQTNLKLWKADLTQEGSFDEAIQGCHGVFHLATPMDFESKDPENEIIKPTIEGVLSIIRSCVKAKTVKKLVFTSSAGTV--NGQEKQLH-VYDESHWSDLDFIYSKKMTAWMYFVSKTLAEKAAWDATKGNNISFISIIPTLVVGPFITSTFPPSLVTALSLITGNEAHYSIIKQGQYVHLDDLCECHIYLYENPKAKGRYICSSHDATIHQLAKIIKDKWPEYYIPTKFPGIDEELPIVSFSSKKL-IDTGFEFKYNLEDMFKGAIDTCREKGLLPY 328
BLAST of LR48_mrnaVigan08g197000 vs. DB:Swiss
Match: ANRPN_VITVI (Anthocyanidin reductase ((2S)-flavan-3-ol-forming) OS=Vitis vinifera OX=29760 GN=ANR PE=3 SV=1) HSP 1 Score: 230.72 bits (587), Expect = 2.020e-72 Identity = 136/332 (40.96%), Postives = 196/332 (59.04%), Query Frame = 1 Query: 19 KVVCVTGASGFIASWIVKFLLQRGYTVRATVRDKGNPKKVSHLANLEGAKERLHLFKADLLEEGSFDSVVEGCHAVFHTASPVRFVVNNPQAELIDPAVKGTLNVLKSCAKSPSVKRVVLTSSISAVAFTGKPKSPEVVVDETWFSDPDFCRESE---FWYTLSKTLAEEAAWKFVNENNIDMIVINPTMVAGPLLQAEINESVEPILNLINGKPF----------LNRSFGWVNVKDVANAHILAYEIASASGRYCLSERVIHYSELARTLRDLYPTFQIPDKCEVDEPYMPTYQISTDK-AKKDFGIEFTPLEVSVRETVESFREKKIIN 972 K CV G +GF+AS +VK LLQ+GY V TVRD N KKVSHL L+ + L +F+ADL +E SF++ + GC VFH A+PV F +P+ ++I PAV+G +NV+K+C ++ SVKRV+LTSS +AV + +VVDE ++D +F ++ + Y SKTLAE+AAWKF ENNID+I + PT++AG L +++ S+ ++LI G F L+ S +V+DV AHI E SASGRY ELA+ L YP +++P D P IS+DK K+ F ++ E+ E+VE F+ K ++ Sbjct: 10 KTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGD-LKIFRADLTDELSFEAPIAGCDFVFHVATPVHFASEDPENDMIKPAVQGVVNVMKACTRAKSVKRVILTSSAAAVTIN-QLDGTGLVVDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSVSIAHVEDVCRAHIFVAEKESASGRYICCAANTSVPELAKFLSKRYPQYKVPTDFG-DFPSKSKLIISSDKLVKEGFSFKYGIEEI-YDESVEYFKAKGLLQ 337 The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan08g197000 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1) Total hits: 10
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan08g197000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g197000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g197000; organism=Vigna angularis; type=mRNA; length=5387bpback to top protein sequence of LR48_mrnaVigan08g197000_Va_Jingnong6_v1.1 >LR48_mrnaVigan08g197000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g197000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g197000_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=325bpback to top mRNA from alignment at Chr_8-CM003378.1:29262523..29267909+ Legend: polypeptidestart_codonexonCDSintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>LR48_mrnaVigan08g197000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g197000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g197000; organism=Vigna angularis; type=mRNA; length=5387bp; location=Sequence derived from: Chr_8-CM003378.1:29262523..29267909+ (Vigna angularisback to top Coding sequence (CDS) from alignment at Chr_8-CM003378.1:29262523..29267909+ >LR48_mrnaVigan08g197000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g197000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g197000; organism=Vigna angularis; type=CDS; length=978bp; location=Sequence derived from: Chr_8-CM003378.1:29262523..29267909+ (Vigna angularisback to top |